SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7902

Length: 1076 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7902 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide repeat domain protein n=2 Tax=Arabidopsis RepID=F4JKH6_ARATH	-	-	0.0	83%
FL-Next	tr=Eukaryotic translation initiation factor 3 subunit, putative; Ricinus communis (Castor bean).	-	-	0.0	85%
Sma3	Eukaryotic translation initiation factor 3 subunit, putative	-	-	4.512e-10	-

Source	Gene names
Sma3	AT4g28080; B1123E10.126; F4F15.250; F6F3.12; F9L1.23; GSVIVT00000279001; GSVIVT00004706001; GSVIVT00008853001; GSVIVT00017134001; GSVIVT00020909001; GSVIVT00022312001; GSVIVT00027051001; GSVIVT00034075001; GSVIVT00037321001; H0811D08.1; OJ1191_G08.42; OJ2

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	GO:0046912	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	cellular carbohydrate metabolic process	GO:0044262	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Citrate synthase-like	IPR002020	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Nitrogen regulatory protein PII	IPR002187	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:13948993-13957840 REVERSE LENGTH=1819	83%
RefSeq	Arabidopsis thaliana	NP_194537.7	tetratricopeptide repeat domain protein [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002320199.1	predicted protein, partial [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SQW7

Fln msg: Distance to subject end: 667 aas, your sequence is shorter than subject: 358 - 1888

Fln protein: GLCHKVGLELAPRDYDMDSANPFKKVDIISMVPVYKQVACSSADGRTLLESSKTALDKGKLDDAVNYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNIHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGPEDLRTQDAAAWLEYFDSKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYIIPSAEVKDKKKQNRTKLRGKLVQSEWDAPMDELTIDINLSPTNNDGKQSPEPEEKGE

Protein Length: 359

Fln nts: GGGGCTTTGCCATAAGGTGGGACTCGAGTTGGCTCCTAGAGATTATGACATGGACAGCGCAAACCCATTCAAGAAAGTAGACATTATCAGCATGGTTCCAGTGTACAAGCAAGTTGCATGCTCATCTGCAGATGGCCGAACCTTGTTAGAATCATCAAAAACTGCTCTGGACAAGGGGAAACTTGATGACGCTGTTAACTATGGGACCAAGGCTCTAGCAAAGCTGGTGGCAGTGTGTGGTCCTTACCATCGAATGACAGCTGGAGCATATAGCTTGTTAGCTGTTGTATTGTATCATACAGGAGATTTCAATCAGGCAACAATTTATCAACAAAAGGCTTTGGATATCAACGAGAGAGAACTAGGTCTCGACCACCCCGATACCATGAAAAGTTATGGCGACCTTGCTGTATTCTATTATCGGCTTCAGCACACCGAATTGGCTCTAAAATATGTCAACCGTGCATTGTATCTTTTGCACCTGACTTGCGGACCATCACACCCAAACACTGCTGCAACATACATTAATGTCGCTATGATGGAAGAAGGCCTGGGAAATATACATGTAGCTCTCAGGTATCTGCATGAGGCCCTAAAATGCAATCAAAGGCTACTTGGAGCAGATCATATACAGACTGCTGCTAGCTATCATGCAATAGCTATTGCTCTTTCATTGATGGAAGCATACTCTTTAAGTGTTCAACATGAGCAGACGACTTTACAAATTTTACAGGCCAAACTTGGTCCAGAGGATCTACGTACACAGGATGCTGCTGCCTGGCTCGAGTATTTTGACTCAAAGGCCTTGGAGCAACAGGAGGCTGCACGTAATGGTACCCCAAAGCCAGATGCATCCATAGCAAGCAAAGGTCATCTCAGTGTATCAGATCTATTAGACTACATAATCCCAAGTGCAGAGGTCAAAGACAAAAAGAAACAAAATCGTACCAAGTTAAGAGGTAAACTTGTCCAAAGTGAATGGGATGCACCTATGGATGAGTTAACAATAGATATCAACTTGTCCCCAACTAACAATGATGGAAAACAGTCTCCAGAACCAGAAGAGAAAGGGGAAT

Fln Alignment:

Contig7902___GLCHKVGLELAPRDYDMDSANPFKKVDIISMVPVYKQVACSSADGRTLLESSKTALDKGKLDDAVNYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNIHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGPEDLRTQDAAAWLEYFDSKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYIIPSAEVK--DKKKQNRTKLRGKLVQSEWDAPMDELTIDINLSPTNNDGKQSPEPEEKGE
B9SQW7______________GLSHKVGLELLPRDYDMDTAYPFRKSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGTKALSKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADMKAREAQKKARAKVKGKPGQN-WETVSDEAQKDETLSPTLTVAENSSDKENKSE

SNPs (tot: 4)

Position	C %	G %	T %	Probability
653		80	20	0.995493
654	80	20		0.995493
655	80		20	0.995493
722	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain