SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7886

Length: 2143 nt

UniGene Fasta

>sp_v3.0_unigene7886
TATGGGGAATGGTAGGTTGTTGTTGATGGTGGTGGTGGAAGAGGAGGAGGAAAAAGAATGGAAGGGCTTCTGGAACTCTCCGCCTCCGATTTCTTCTGCTCCGCTCCCGCTTCCACCTCGCCGAAGGGATCCAGGGTAGTAATCAGCCTTGAACGCCTGTCTCTGGACGAGAAAAGTCTCTCCGGCGACCGCCCACCGCCGATCAGGACCCTGGAGAGCACAAAGAGCACAGACTGCAGTGAATTAATGTCGAAGAATCAGGCTTCAGTGAAGGGTGTCCAGACGCCGGTTTCCGATTCGAATCCCATGATGACTGATGCCTGGGAAAATCTCCGGCGGTCGCTAGTGTATTTTCGCGGCAAGGCCGTGGGCACCATTGCCGCGTCGGATTCCAACGAGGAAGCGCTGAATTATAACCAGGTTTTCGTGAGGGATTTTGTGCCGAGCGCCCTGGCGTTTCTGATGAACGAGGAACCTGAGATTGTGAAGAATTTTCTGCTCAAGACGCTGTATCTTCAAGGGTGGGAGAAGCGGATTGACTGTTTTACACTCGGGGAAGGAGTCATGCCGGCTTCTTTCAAGGTCCTTCACGATCCCGTCAGGAATGCGGAGATCCTCATTGCGGATTTTGGAGAGAGCGCGATTGGGAGAGTGGCGCCTGTGGATTCTGGGTTTTGGTGGATAATTCTTCTCAGAGCGTATACGAAGTCTACCGGAGATCATGCGTTGGCTGAGATGCCTGAGATTCAGCGTGGGATACGGTTGATTCTGAGTCTCTGCCTCTCCGAGGGATTCGATACGTTCCCCACCTTGCTGTGCGCTGACGGGTGCAGCATGATTGACAGACGAATGGCAATATACGGTTACCCCATCGAGATTCAGGCCCTTTTCTTCTTCGCCCTCAGCTGTGCACGAAAGCTGCTGAAGCCCGAGGGCGCCGGGAAAGAATTTATCGAGCGAATCGACAAGAGGATGCACGCCCTGAGCTACCACATGCGTTCTTATTTCTGGCTCGACTTCCAGCAGCTCAACAATATTTACCGTTACAAGACGGAAGAATACTCTCACACTGCTGTCAACAAATTCAATGTCATCCCGGACTCCATTCCCGATTGGGTTTTCGATTTCATGCCCATGCGGGGCGGTTACTTCATCGGGAACGTGAGCCCTGCGCGCATGGATTTCAGATGGTTTTGCCTCGGGAACTGTGTAGCAATACTCAGTTCGCTGGCGACGCCCGAGCAAGCATCTGCAATAATGGACCTGCTGGAGGAGAGGTGGCAAGATTTAATTGGCGAGATGCCTCTCAAAATTTCGTACCCAGCTCTTGAAGGTCATGACTGGCGAATCGTTACAGGATGCGATCCTAAAAATACAAGATGGAGTTATCACAACGGCGGTTCCTGGCCAGTTCTCCTGTGGCTGTTGACAGGGGCCTGCATAAAGTCGGGGAGGCCGCAGATAGCGAGAAGAGCAATCGAGCTGGTGGAGCAGAGGCTCTCAAAGGACGGATGGCCTGAATACTATGACGGGAAGATGGGTCGATACGTGGGGAAGCAGGCAAGAAAGCTTCAGACATGGTCCATTTCCGGCTATCTCGTTGCCAAAATGATGCTGGAAGACCCTTCTCATCTGGGCATGATTTCGTTAGAGGAGGACCGCAAAATCATGAAGCCCCGTCTTACCAGATCCGTTTCCTGGACTTGTTAGTCCTTTCTAAATATATACGATATCATGATATCATATTCTGCTTACACAGAATGAGGAGCGCCCTCTATTCCCTCTACCCACCCACGCACCTTATTTTGCCTGAATTTTCTTAGCATCAGAATGCAAAACAGAATGTAACCGCTGCAGCCATGGCATTGAACAGTACAACACAACACGAAACACTTGCAAATTGTTGGGGAAGGTAAAAAAAATCGTTATGGCATTCCATTCTAATGTGGTTTTGTAGTTTTCAACGATGGTGACTCTGGTTTGTTACCCAACAATATACACCATAAACCTAAGAGCCGCCTGGTGGTCACGTTCATATGTTCATGTTTACGTCCTTGTCAAATAATAACGACTTTCTATAAAGAACCAGACTGAAATAATGAAGAAAACAGGTTCAGAAAGAACATACAATTTTTAAATGTGG

Ace file of the UniGene sp_v3.0_unigene7886

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	neutral/alkaline invertase [Manihot esculenta]	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	80%
Sma3	Beta-fructofuranosidase, putative	-	-	6.106e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-fructofuranosidase.	EC:3.2.1.26	-	7.51e-25	-

Source	KEGGs	Term	e value	Identity
Sma3	Galactose metabolism	00052	7.51e-25	%
Sma3	Starch and sucrose metabolism	00500	7.51e-25	%
Sma3	Metabolic pathways	01100	7.51e-25	%

Source	Gene names
Sma3	AInv; AT3G06500; AT4G34860; AT4g09510; AT4g34860; AlkIN1; At1g35580; At1g56560; At1g72000; At3g05820; At3g06500; At4g09510; At4g34860; At5g22510; B1140D12.1-1; B1140D12.1-2; F10A16.11; F17M19.15; F25P12.99; F28P5.11; F5E6.17; GSVIVT00008639001; GSVIVT0001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	beta-fructofuranosidase activity	GO:0004564	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR006937	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G09510.1	CINV2 cytosolic invertase 2 chr4:6021312-6023310 REVERSE LENGTH=558	72%
RefSeq	Arabidopsis thaliana	NP_567347.1	cytosolic invertase 2 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002327253.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8RBK2

Fln msg:

Fln protein: MEGLLELSASDFFCSAPASTSPKGSRVVISLERLSLDEKSLSGDRPPPIRTLESTKSTDCSELMSKNQASVKGVQTPVSDSNPMMTDAWENLRRSLVYFRGKAVGTIAASDSNEEALNYNQVFVRDFVPSALAFLMNEEPEIVKNFLLKTLYLQGWEKRIDCFTLGEGVMPASFKVLHDPVRNAEILIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDHALAEMPEIQRGIRLILSLCLSEGFDTFPTLLCADGCSMIDRRMAIYGYPIEIQALFFFALSCARKLLKPEGAGKEFIERIDKRMHALSYHMRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMRGGYFIGNVSPARMDFRWFCLGNCVAILSSLATPEQASAIMDLLEERWQDLIGEMPLKISYPALEGHDWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTGACIKSGRPQIARRAIELVEQRLSKDGWPEYYDGKMGRYVGKQARKLQTWSISGYLVAKMMLEDPSHLGMISLEEDRKIMKPRLTRSVSWTC*

Protein Length: 552

Fln nts: TATGGGGAATGGTAGGTTGTTGTTGATGGTGGTGGTGGAAGAGGAGGAGGAAAAAGA_-_ATGGAAGGGCTTCTGGAACTCTCCGCCTCCGATTTCTTCTGCTCCGCTCCCGCTTCCACCTCGCCGAAGGGATCCAGGGTAGTAATCAGCCTTGAACGCCTGTCTCTGGACGAGAAAAGTCTCTCCGGCGACCGCCCACCGCCGATCAGGACCCTGGAGAGCACAAAGAGCACAGACTGCAGTGAATTAATGTCGAAGAATCAGGCTTCAGTGAAGGGTGTCCAGACGCCGGTTTCCGATTCGAATCCCATGATGACTGATGCCTGGGAAAATCTCCGGCGGTCGCTAGTGTATTTTCGCGGCAAGGCCGTGGGCACCATTGCCGCGTCGGATTCCAACGAGGAAGCGCTGAATTATAACCAGGTTTTCGTGAGGGATTTTGTGCCGAGCGCCCTGGCGTTTCTGATGAACGAGGAACCTGAGATTGTGAAGAATTTTCTGCTCAAGACGCTGTATCTTCAAGGGTGGGAGAAGCGGATTGACTGTTTTACACTCGGGGAAGGAGTCATGCCGGCTTCTTTCAAGGTCCTTCACGATCCCGTCAGGAATGCGGAGATCCTCATTGCGGATTTTGGAGAGAGCGCGATTGGGAGAGTGGCGCCTGTGGATTCTGGGTTTTGGTGGATAATTCTTCTCAGAGCGTATACGAAGTCTACCGGAGATCATGCGTTGGCTGAGATGCCTGAGATTCAGCGTGGGATACGGTTGATTCTGAGTCTCTGCCTCTCCGAGGGATTCGATACGTTCCCCACCTTGCTGTGCGCTGACGGGTGCAGCATGATTGACAGACGAATGGCAATATACGGTTACCCCATCGAGATTCAGGCCCTTTTCTTCTTCGCCCTCAGCTGTGCACGAAAGCTGCTGAAGCCCGAGGGCGCCGGGAAAGAATTTATCGAGCGAATCGACAAGAGGATGCACGCCCTGAGCTACCACATGCGTTCTTATTTCTGGCTCGACTTCCAGCAGCTCAACAATATTTACCGTTACAAGACGGAAGAATACTCTCACACTGCTGTCAACAAATTCAATGTCATCCCGGACTCCATTCCCGATTGGGTTTTCGATTTCATGCCCATGCGGGGCGGTTACTTCATCGGGAACGTGAGCCCTGCGCGCATGGATTTCAGATGGTTTTGCCTCGGGAACTGTGTAGCAATACTCAGTTCGCTGGCGACGCCCGAGCAAGCATCTGCAATAATGGACCTGCTGGAGGAGAGGTGGCAAGATTTAATTGGCGAGATGCCTCTCAAAATTTCGTACCCAGCTCTTGAAGGTCATGACTGGCGAATCGTTACAGGATGCGATCCTAAAAATACAAGATGGAGTTATCACAACGGCGGTTCCTGGCCAGTTCTCCTGTGGCTGTTGACAGGGGCCTGCATAAAGTCGGGGAGGCCGCAGATAGCGAGAAGAGCAATCGAGCTGGTGGAGCAGAGGCTCTCAAAGGACGGATGGCCTGAATACTATGACGGGAAGATGGGTCGATACGTGGGGAAGCAGGCAAGAAAGCTTCAGACATGGTCCATTTCCGGCTATCTCGTTGCCAAAATGATGCTGGAAGACCCTTCTCATCTGGGCATGATTTCGTTAGAGGAGGACCGCAAAATCATGAAGCCCCGTCTTACCAGATCCGTTTCCTGGACTTGTTAG___TCCTTTCTAAATATATACGATATCATGATATCATATTCTGCTTACACAGAATGAGGAGCGCCCTCTATTCCCTCTACCCACCCACGCACCTTATTTTGCCTGAATTTTCTTAGCATCAGAATGCAAAACAGAATGTAACCGCTGCAGCCATGGCATTGAACAGTACAACACAACACGAAACACTTGCAAATTGTTGGGGAAGGTAAAAAAAATCGTTATGGCATTCCATTCTAATGTGGTTTTGTAGTTTTCAACGATGGTGACTCTGGTTTGTTACCCAACAATATACACCATAAACCTAAGAGCCGCCTGGTGGTCACGTTCATATGTTCATGTTTACGTCCTTGTCAAATAATAACGACTTTCTATAAAGAACCAGACTGAAATAATGAAGAAAACAGGTTCAGAAAGAACATACAATTTTTAAATGTGG

Fln Alignment:

Contig7886___SLDEKSLSGDRPPPIRTLESTKSTDCSELMSKNQ-ASVKGVQTPVSDSNPMMTDAWENLRRSLVYFRGKAVGTIAASDSNEEALNYNQVFVRDFVPSALAFLMNEEPEIVKNFLLKTLYLQGWEKRIDCFTLGEGVMPASFKVLHDPVRNAEILIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDHALAEMPEIQRGIRLILSLCLSEGFDTFPTLLCADGCSMIDRRMAIYGYPIEIQALFFFALSCARKLLKPEGAGKEFIERIDKRMHALSYHMRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMRGGYFIGNVSPARMDFRWFCLGNCVAILSSLATPEQASAIMDLLEERWQDLIGEMPLKISYPALEGHDWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTGACIKSGRPQIARRAIELVEQRLSKDGWPEYYDGKMGRYVGKQARKLQTWSISGYLVAKMMLEDPSHLGMISLEEDRKIMKPRLTRSVSWTC
D8RBK2______________SLDERTLSDLVSPGISPLPPSRH-EIGENFSMNWFRSASNTPRSLLDPNPAMIDAWEQLRRSLVYFRDKPIGTIAANDPVEESLNYNQVFVRDFVPSALAFIMNGEPEIAKNFLMKTLRLQAWEKRIDCFTLGEGVMPASFKVLHDPSRT-DTMIADFGESAIGRVAPVDSGFWWIILLRAYVKATGDHNLSDDPDCQRGIRLILTLCLSEGFDTFPTLLCADGCCMIDRRMGIYGYPIEIQALFFMALRCAKFLLKPEAGGKEFIERIDKRLHALRYHLRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMKGGYFIGNVSPARMDFRWFTIGNCVAILSSLTTPEQATAIMDLIEERWDDLIGEMPLKVTYPALEGHEWKIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIEIAEARLSKDGWPEYYDGKTGRYIGKQARKLQTWSIAGYLVAKMMLEDPSHLGMVSLEEDKK-TKPYLTRSNSWTC

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
507			84	15	0.999986
1254	85			14	0.993533
1323	88		11		0.923564
1489	11		88		0.923564
1790	82		17		1.0
1792	17	82			1.0
1823	27		72		1.0
1858		81		18	0.999994
1918	80	20			0.995493
1938	87	12			0.992554
2010		12		87	0.992554
2013		14	85		0.993533
2024		16		83	0.994512
2038			16	83	0.994512
2040	16			83	0.994512
2045	16		83		0.994512
2067	85		14		0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
27	38	TGG TGG TGG TGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain