SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7830

Length: 1400 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7830

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	small GTP-binding protein [Mesembryanthemum crystallinum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015599	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54840.1	ARA6, ATRABF1, ARA-6, ATRAB5C Ras-related small GTP-binding family protein chr3:20318597-20320782 FORWARD LENGTH=202	75%
RefSeq	Arabidopsis thaliana	NP_567008.1	Ras-related small GTP-binding family protein [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002316386.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMT0

Fln msg:

Fln protein: MGCSASTPGKSSGLVRGSSLESSGVSDSKNLRIKLVLLGDSGVGKSCIVLRFVRGQFDPSSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYASLAPLYYRGASAAVIVYDITCMETFHKAQFWVKELQKHGNPNIVMALVGNKADLEESRSVGHDVAQAYADANGMFLIETSAKTADNINQLFEEIAKRLPRTTPLQT*

Protein Length: 204

Fln nts: AATGTTGTTGGATTAAATCTCAATAGCCCTCTAGCTATGCCGTATTGTCAATGGATTTGTTGGCCATCGAGTCAACCATCTTAATCGCTGCTCTTTTAGTGTCGTTGTAAGTTCCATCCACTGCGGAAGATTGGCACATTGGGTTACGCACACGATTAAAAATAATGGGCTGCCTGCCTGTTTCACGGCGCTCATGTTACGAAATGTAGATATTGGTCTGATTAGTGTCCGCGAAGCTACCCACAGAGCTTTAAATCTTCCATCTTTTGGTATCCGCTTCAATTTATTGGCCATCTGAAATTGCAGGTAACGGAACTTCGCGGCCGTTGTAGGATAAATCTTCATCATACATAATAAATTCTCCATCAGACTCTCTATCCTTCTCGTTTAGCTGCATCGGTTGCAAAATCATTTTCAGCC_-_ATGGGATGCTCTGCTTCCACTCCAGGGAAATCATCAGGGCTTGTTCGTGGTTCAAGTCTTGAGAGCTCTGGCGTGTCAGACTCCAAAAACTTGCGGATAAAGTTGGTTCTTTTGGGTGACTCAGGTGTCGGTAAAAGTTGCATAGTTTTACGTTTTGTACGTGGCCAGTTTGACCCTTCATCAAAGGTGACAGTAGGAGCATCATTTTTATCGCAAACAATTGCATTGCAGGATTCTACTACTGTCAAGTTTGAGATATGGGATACTGCTGGTCAGGAAAGGTATGCTTCTTTAGCACCTCTTTATTACCGGGGTGCATCGGCTGCAGTGATTGTGTATGACATAACCTGTATGGAAACTTTTCATAAAGCCCAATTCTGGGTAAAGGAGCTTCAGAAACATGGGAATCCAAATATAGTAATGGCTCTAGTGGGAAACAAGGCCGATCTTGAAGAGAGCCGTTCTGTTGGACATGATGTTGCACAAGCTTATGCAGATGCCAATGGTATGTTCTTGATTGAGACTTCTGCAAAAACAGCAGACAACATAAACCAGCTATTTGAGGAAATTGCAAAGCGCTTACCCCGGACAACTCCATTGCAGACCTAG___GACCTTGCAGACCTAGGAGATTTATAGATGGTTGTGTTATTATATGCTAATCAATTCATGAGTTTATTACTTTATTTGTACAAATTAATCAAATGTACAATATGTGCTTTCAAAATTTTCTCTGAACATTCTATGCTAGAGAATCAGTGATGTATTTGGGTTGGTTTTGAAGAGCCTACCTCAATAAACTCTCATGTGAGATATTTACGATGGTCATGATATTTACGATGATTATTAGTTTTATATTTGCCAGCTTGTTTGGTTGACTGGTTGACTTTGGAAGGGGCAAGACACACAGTGATATGGAGATTATGTTTTTAATTTTGATTTTAGTGAAATATCTAATATTAGTGATGCGAGATGCCATGTTT

Fln Alignment:

Contig7830___MGCSASTPGKXXXXXXXXXXXXXXXXXXKNLRIKLVLLGDSGVGKSCIVLRFVRGQFDPSSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYASLAPLYYRGASAAVIVYDITCMETFHKAQFWVKELQKHGNPNIVMALVGNKADLEESRSVGHDVAQAYADANGMFLIETSAKTADNINQLFEEIAKRLPRTTPLQT
A9NMT0______________MGCSASSAGKSSGLVRGSTLENSGMSDSKNLRIKLVLLGDSGVGKSCIVLRFVRGQFDPSSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYASLAPLYYRGASAAVIVYDITCMETFHKAQFWVKELQKHGNPNIVMALVGNKADLEESRSVGHDVAQAYADANGMFLIETSAKTADNINQLFEEIAKRLPRTTPLQT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
120		66	33		0.997452
121	66		33		0.997452
122		66	33		0.997452
123			33	66	0.997452
200	83		16		0.999991
1341		4		95	0.994598
1355		9		90	1.0
1365		85	14		1.0
1373			64	35	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain