SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7806

Length: 1022 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7806

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	monodehydroascorbate reductase [Spinacia oleracea]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Sma3	Monodehydroascorbate reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Monodehydroascorbate reductase (NADH).	EC:1.6.5.4	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	49D11.20a; 49D11.20b; AFRR; AT3G52880; At1g63940; At3g09940; At3g27820; At3g52880; At5g03630; BO-MDAR 1; BO-MDAR 2; CHLREDRAFT_139735; F17C15_50; F8J2_50; GSVIVT00002544001; GSVIVT00020720001; GSVIVT00021644001; K16N12.2; MDAR; MDAR1; MDHAR; MDHAR1; MICPU

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisomal membrane	GO:0005778	Cellular Component	-
Sma3	peroxisomal matrix	GO:0005782	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	monodehydroascorbate reductase (NADH) activity	GO:0016656	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Protein BYPASS-related	IPR008511	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G63940.2	MDAR6 monodehydroascorbate reductase 6 chr1:23730095-23733534 FORWARD LENGTH=493	67%
RefSeq	Arabidopsis thaliana	NP_564818.1	Monodehydroascorbate reductase [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002299509.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUH7

Fln msg: your sequence is shorter than subject: 280 - 434

Fln protein: LVIIGGGYIGMEVAAAAAGWKIDTTVVFPEENVMARLFPATLGRKYEELYEENGVKFFKNAFIKRLVAGTDGRVTAVQLENGSTLDTDMVVIGVGAKPVSTPFAEAGLKTHAGGIQVDGQFRTSSPGIFAIGDVAAFPLKMYGRTARVEHVDHARKSAQHCVNALLNIRTDPYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETIEVGDFGPKYATFWLESGKLKGVFLESGSSEEFEILPKLARIQPFVEKSKLQNVKSVEDALNLVTKLLEVQTIS*

Protein Length: 281

Fln nts: CTTGTTATAATTGGAGGTGGTTACATTGGCATGGAGGTAGCGGCTGCTGCTGCTGGTTGGAAGATTGACACTACGGTAGTATTTCCTGAAGAGAATGTCATGGCTAGACTGTTTCCTGCTACACTTGGAAGAAAGTATGAAGAACTGTATGAGGAAAATGGTGTCAAGTTTTTCAAGAATGCATTCATAAAAAGGTTGGTGGCTGGAACTGATGGGCGAGTAACTGCAGTCCAGCTGGAAAATGGAAGCACTCTTGACACAGATATGGTTGTTATCGGGGTTGGTGCGAAACCAGTAAGCACTCCTTTTGCAGAAGCAGGTTTGAAAACTCATGCAGGGGGCATACAGGTTGACGGTCAATTCAGAACAAGTAGTCCAGGAATATTTGCTATTGGAGATGTAGCAGCATTCCCCCTTAAGATGTATGGTAGGACAGCACGCGTTGAGCATGTTGATCACGCTCGCAAATCAGCACAGCACTGTGTGAATGCACTTTTAAATATTCGAACTGATCCATACGACTACTTGCCTTACTTTTATTCGAGGGTATTCGAATATGAAGGCAGTTCAAGGAAAGTCTGGTGGCAGTTTTATGGTGACAATGTTGGGGAAACCATTGAAGTTGGTGACTTCGGCCCTAAGTATGCCACATTTTGGCTTGAATCTGGAAAACTGAAAGGCGTCTTTCTTGAAAGTGGAAGTTCGGAGGAATTTGAAATTCTTCCAAAGTTGGCAAGGATTCAACCCTTTGTCGAAAAGTCAAAGCTACAAAATGTGAAATCTGTTGAGGATGCACTAAATCTTGTTACAAAGTTGCTCGAGGTCCAAACTATAAGTTAG___ATCATATTTGGATGAATAACGGCCATAACTTAATTCATAGTGTGAATAATTAATCCTAGCTCCTTTATTGTGGTTGAGATTCATATGAAGACTTTAGATACTTCATCGAGGGTAAATAAATTCAATACCACACCCTGCAGTTCTTAGTTATTTAAGATGTTGAATATTATGGATTTGAGTAG

Fln Alignment:

Contig7806___VIIGGGYIGMEVAAAAAGWKIDTTVVFPEENVMARLFPATLGRKYEELYEENGVKFFKNAFIKRLVAGTDGRVTAVQLENGSTLDTDMVVIGVGAKPVSTPFAEAGLKTHAGGIQVDGQFRTSSPGIFAIGDVAAFPLKMYGRTARVEHVDHARKSAQHCVNALL----NIRTDPYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETIEVGDFGP-----KYATFWLESGKLKGVFLESGSSEEFEILPKLARIQPFVEKSKLQNVKSVEDALNLVTKL
A9NUH7______________VIVGGGYIGLELAAVLRINKYKVKMVYPEPWCMPRLFTADIAAFYEGYYRGKGVEIIKGTVATGFVTDEHENVKIVKLKDGRELEADIVVVGVGGRPLTGLF-KGQLEEEKGGIKTDGFFKTSVPDVYAVGDVATFPMKIYGDIRRVEHVDHARKSAAQAVQAIKAKEEGKSFEEYDYLPYFYSRSFDLS-------WQFYGDNVGEAIIFGDNNPATPKAKFGSYWIKDGRVVGVFLENGTPEENKAIAKVARLKPLVESKE----ELIKDGLAFASKI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
645		10		90	0.90298
730		16		83	0.999991
783		18		81	0.999994
860		88		11	0.923564
872	88		11		0.923564
873	88	11			0.923564
882	11		88		0.923564
907	42		57		1.0
994	50		50		1.0
995	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
43	55	GCT GCT GCT GCT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain