SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7737

Length: 1443 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7737

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nudix hydrolase 13 n=3 Tax=Andropogoneae RepID=B6SQG1_MAIZE	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Diphosphoinositol polyphosphate phosphohydrolase, putative	-	-	2.356e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	1.857e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.857e-12	%
Sma3	Lipopolysaccharide biosynthesis	00540	1.857e-12	%
Sma3	Folate biosynthesis	00790	1.857e-12	%
Sma3	Metabolic pathways	01100	1.857e-12	%

Source	Gene names
Sma3	At1g12880; At1g14860; At1g18300; At2g01670; At3g12600; At3g26690; CHLREDRAFT_155535; F10B6.26; F13K23.14; F15H18.18; GSVIVT00000650001; GSVIVT00006222001; GSVIVT00017875001; GSVIVT00030581001; GSVIVT00030896001; GSVIVT00032949001; GSVIVT00037973001; H0209

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	NAD+ diphosphatase activity	GO:0000210	Molecular Function	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	bis(5'-adenosyl)-pentaphosphatase activity	GO:0034432	Molecular Function	-
Sma3	ADP-ribose diphosphatase activity	GO:0047631	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	0.0	-
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12600.1	atnudt16, NUDT16 nudix hydrolase homolog 16 chr3:4004809-4005995 FORWARD LENGTH=180	63%
RefSeq	Arabidopsis thaliana	NP_566428.1	nudix hydrolase 16 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002323248.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA97

Fln msg:

Fln protein: MADLVARTGRHQQLYEDGYRLVAGCIPYKYTGADDTCNGNTKQRLEVLMITSQSGPGLLFPKGGWENDETVEEAACREALEEAGVRGEIKGKLGSWKFRSKSHRDEYSPEGLCRAEMFAMCVTEQLESWPEQDARERKWLAIDEARAQCRYDWMREALDVCVSMYKVRPSSNSDAPVS*

Protein Length: 180

Fln nts: TAACGGGTAATAATATCTGGTTGGCTAGCATGTAGTTAGGGTTACAGTGGCAGCGAGGGCGAGAGATCGAGTTTGTTTTTGATTTTGGTATTTTCTGTACAGTTCTTGTTTTGGATTCTGATGCTGTGGTCGGTTCTTCCTTCCCATGCCTACCCTTTCTGGTCACCGACACTTTTTCATAATATCGGTGCCTGATCTGCCCTGAGTGTGCCGTGTGAATGCCGATTTTCTGAAGAGAACACCGCCTCTCGGTGAATTTAGTGGTCGGACGACGAATGTATGGGATCGAGACTCTGTCGCAGCGCTGTCTTGGATTGCTGAGCGGTGGAATTTGAGTTGGAGGGGTAAAAGAAACGGGATATCGTTAATTATCCGCCAATCGCGCGCAGTATTTTGTGCAGAGCATGCAATAAAAGAGGAGGGGTGGAGGAATTGGTTAAAGGCTGAGTCAGC_-_ATGGCTGACCTCGTGGCGCGGACTGGTCGGCATCAACAGCTGTATGAAGACGGTTACCGACTAGTCGCTGGGTGTATTCCTTATAAGTACACAGGTGCCGATGATACCTGCAATGGCAACACTAAGCAGAGATTGGAAGTTCTTATGATCACTTCACAAAGTGGACCTGGTCTTCTTTTTCCAAAGGGAGGATGGGAAAATGATGAGACTGTAGAGGAGGCTGCTTGTCGAGAAGCATTAGAAGAAGCAGGTGTTCGAGGAGAGATCAAGGGAAAGTTGGGCTCGTGGAAGTTCAGAAGCAAAAGCCACCGGGATGAATACAGTCCAGAAGGCTTATGCAGAGCAGAGATGTTTGCAATGTGTGTTACTGAGCAGCTGGAATCCTGGCCTGAACAAGATGCACGGGAACGCAAATGGCTTGCAATTGACGAGGCACGTGCACAATGTAGATATGATTGGATGCGAGAAGCACTTGATGTGTGTGTTTCCATGTACAAAGTCCGGCCTTCTTCAAATTCAGATGCCCCTGTATCATGA___CAGCCTAATGTTCTGACTTCTGAGCATGTATGGGGATCGCTTCACGTTTTGCAGCTTTTTTTCCTCTGCTGAGCTCCATGATTTATGGATTGTAACAGAAATAATCTGGGAAGGAAATTGAAGTTTTCTTATTCTTAATTTCTTTGGATTGTCTGGAAAATACCAGATTCTCCCAAAATAGTTGTTTTATTCTTGCCTTTTTGAAAAGTTCTAAAGTACACTGTTAGTCTGAGATGTCCTTAGAAAGTGCCCTCAGTCTGTCAATTTTTGACTCCAAAGCACTAAGTAACCAAGGGTGGCGAAACATCATTATCTTTAGACATTCTGGGATAAGTAAATATGTGATTATTGAAAGCATCAATATGATTCACCAAAGCAACTCTTTGCTGTGACATCTCTCATGGTTATTATGTCATCGGAATTGGCATTTGGCTATTTTCTCTTGTACTTAGG

Fln Alignment:

Contig7737___MADLVARTGRHQQLYEDGYRLVAGCIPYKYTGADDTCNGNTKQRLEVLMITSQSGPGLLFPKGGWENDETVXXXXXXXXXXXXGVRGEIKGKLGSWKFRSKSHRDEYSPEGLCRAEMFAMCVTEQLESWPEQDARERKWLAIDEARAQCRYDWMREALDVCVSMYKVRPSSNSDAPVS
D5AA97______________MGDLVARTGRHQQRYEDGYRLVAGCVPYRYTLADDTCNGNTKQRLEVLMITSQSGPRLVFPKGGWENDETVVEAARREALEEAGVRGEIKGKLGSWEFRSKSHRDECSPEGLCKADMFAMHVTEQLNSWPEQDARERKWLAISTALEQCRYDWMREVLNVCVSRYSVPPSSNSDVPIS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
922	18		81		0.999994
982		71		28	1.0
1047		87		12	0.992554
1350		14		85	0.993533
1354	16			83	0.994512
1356	16			83	0.994512
1357	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain