SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7711

Length: 2572 nt

UniGene Fasta

>sp_v3.0_unigene7711
ATGGGGGAATCTTAAGAAGTCGTCGTGACCTTGGCTGTCACTCACCTTTTTTCCTCTCTATAAATGATAAATTTTAGCTATATTCAAATATGCTTGTGTTGTTATCATATTTTAACACAAATGCTACTCTCAATACATCCAGATTTCGATCTCAGCTGCAACTGTTTGGGTGTGGTGGATTTTCTTGATTGTTGACAGGGAATGCCGGCACTGTGCGGATCAAGGGCTTTCTTGGCCTAAAGAAATAGCAGTTATGATAAAGCAAATACTGGGCAGACTTCCCCGCAAACAATCTAAATCTGACCACCAGAATAACAGTAGCGATGTAGGAGGGGGGACTTCTTCGAATGCCGTCGCTTACAATTATGGGAATAAATTACCCCTTCCTTCTGTTTTGAGTAATGGAAGCTCGAAATCTCTCAGTAACAACTATGAACCTCTACCCTTTTTCAGGGATGTGCCCAGTTCTGACAGAGAAAATTTGCTCATCAAAAAATTGAGCCTATGTTCTGCTGTTTTTGATTTCACCGACCCCTACAAAAATGCGAGAGAGAAGGAAATTAAACGCCAAAACCTGCTGGACCTTGTTGATTTCATCATTTCAGGTAGTTGCAGGCTCAATGAAACAACAATGGAGGAGATTGCTAAGATGGTTTCTGCCAATTTGTTCAGGACTCTGACATCAAGACCTTCACCAGCACCACCTTCCATTGAAGGCCTTGATCCAGAAGAGGAGGTGTCAGCCTTGGAGCCTGCCTGGTCACATCTGCAGTTGGTCTATGATTTCCTCCTCAGGTTCGTAGCATCTCCCGAGACTGATGCAAAAATTGCCAAGAGATACATTGATCATTCATTTGTTCTGAGGTTAATGGATCTCTTTGATTCCGAGGACCCAAGAGAGAGAGAATGTCTGAAAACAATTTTGCATCGTATTTATGGCAAATTCATGGTGCACAGGCCCTTCATTCGTAAGGCAATCAACAACATTTTTTACAGATTTATATTTGAGACTGAGAAATTTAATGGAATAGCCGAGCTGCTAGAGATATTGGGTAGTATCATTAGTGGGTTTGCATTGCCACTGAAAGAGGAACACAAACTTTTCCTTGTCCGAACTTTGATACCATTACATAAACCGAAATGTTTGTCCTCATACCATCAACAATTATCCCATTGTATCATACAGTTTGTGGAAAAGGACTTCAAGCTAGCAGACACTGTGATAAGGGGATTGTTAAAGTACTGGCCTATCACAAATAGTCAGAAGGAGGTGCTTTTCCTCGTAGAATTGGAGCAAGTTTTGGAAATCACCCAGGCAGCTGAATTTCAGAGGTGTATGGTGCCCTTGTTTCGACAAATCGGGCGCTGCCTGAACAGTTCACACTTCCAGGTGGCTGAGCGTGCTTTGTTTCTGTGGAACAATGATCAAATTTTAAGTTTGATGGCACAACACCGATATGCAATATTGCCATTGATTTTCCCTTCTCTGGAGAAAAATATAAGAAACCACTGGAATCAACTTGTGCACAATTTGACTTGGAATGTGAGAAAGATGTTAATAGATATGGATCAAGATCTTTTCGAGGATTGCCAACGTAGGTTCCATGAAGAGGAAACAAAGGCAATACGCATACAAGAGCAGCGTGAAATGACATGGAAACGTTTGGAAGCAGTTGCTGCTTCAAAAGCTGTAAGTAATGAACTAGTGCCTGTAGCACATCTAAGGGGTAGCAATTCTAGTCTGAAAGCTTCGTCTGTCAGTTCACCATTTGTAATATTATTATATTAATCAATCCTTGGACAGGAAACTGAAGTAGTTGGAGGCATGTCACTTTTGTTTCGACCTCTTCCTTTCCAAGTGTATTGCAACATTTTATGACTGAGAGTGGGCTAAAAGTTGTCTTGCAGGTAAGTTTCTCTTGAGGAGGTCTTTTGGTCGAAAACTGCAAACTGAAATCAGAGTTTTGAGCTTTGGCTTCGAATTCCTTTTCCAAAAATAAATATTAAATTCTTTGCATATATCTGTTATATCATTCTTTTCCCTTGTGAGTTGGGCTGAAAGGAAGTTGGAAACAGAAATGGTTAAGGTATGGGTTCTTCATTATTGGTCAACCACATACTTGCTTTTAAGCATGAAGTTACTTTGGTTGGTCTACTGCCTTTCTACTCATGTTGTAAAGATTGTCAGGATTTTGCCTCTTTCCAGCTGGTAGATGTGCGTTGACTTGTCTCCTTCCAAATGCAATGCACCGCTGAGAGTCTACATGTGCCAAGAATGTTTCTGTGAATGTAGCTTGAAGAAAAATAGTATATTAGGTATTCAAAAATTTGGATTGCCAGAACTTTTGGTAACTGACCATGGTTCTAGCTTCCTTTCCACCCAGAATTATGATAACCTTTTCTGCCTTATTGCAGAAAGCCATTGATAGGCTTGAATTTAGTACAGGAAGTTATTGATGGAATTTGTTTATATGTGAGAAGTTTAGATTCTTATTACAAAATTGGAGTATATTTCTTCTGCTTAGTGCTTTGTTCACTAGTGATCTCTTGAATCTGAAATTATTCTATTACA

Ace file of the UniGene sp_v3.0_unigene7711

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphatase like protein [Arabidopsis thaliana] emb\|CAB78583.1\| phosphatase like protein [Arabidopsis thaliana]	-	-	0.0	63%
FL-Next	sp=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Protein phosphatase 2a, regulatory subunit, putative	-	-	9.176e-22	-

Source	Gene names
Sma3	AT3G26020; At1g13460; At3g09880; At3g21650; At3g26020; At3g26030; At3g54930; At4g15415; At5g03470; At5g25510; B'ALPHA; B'BETA; B'DELTA; B'EPSILON; B'ETA; B'GAMMA; B'IOTA; B'THETA; B'ZETA; B'kappa; B'teta; B'zeta; B1029H08.25; B1203H11.34; CHLREDRAFT_12763

Source	GOs	Term	Type	Identity
Sma3	protein phosphatase type 2A complex	GO:0000159	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	growth factor activity	GO:0008083	Molecular Function	-
Sma3	poly(U) RNA binding	GO:0008266	Molecular Function	-
Sma3	protein phosphatase type 2A regulator activity	GO:0008601	Molecular Function	-
Sma3	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0015450	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	protein secretion	GO:0009306	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Platelet-derived growth factor (PDGF)	IPR000072	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Protein phosphatase 2A, regulatory B subunit, B56	IPR002554	-	-
Sma3	SecE subunit of protein translocation complex	IPR005807	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G15415.2	-	64%
RefSeq	Arabidopsis thaliana	NP_567464.1	protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002321144.1	predicted protein, partial [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8RW96

Fln msg:

Fln protein: MIKQILGRLPRKQSKSDHQNNSSDVGGGTSSNAVAYNYGNKLPLPSVLSNGSSKSLSNNYEPLPFFRDVPSSDRENLLIKKLSLCSAVFDFTDPYKNAREKEIKRQNLLDLVDFIISGSCRLNETTMEEIAKMVSANLFRTLTSRPSPAPPSIEGLDPEEEVSALEPAWSHLQLVYDFLLRFVASPETDAKIAKRYIDHSFVLRLMDLFDSEDPRERECLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKFNGIAELLEILGSIISGFALPLKEEHKLFLVRTLIPLHKPKCLSSYHQQLSHCIIQFVEKDFKLADTVIRGLLKYWPITNSQKEVLFLVELEQVLEITQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDQILSLMAQHRYAILPLIFPSLEKNIRNHWNQLVHNLTWNVRKMLIDMDQDLFEDCQRRFHEEETKAIRIQEQREMTWKRLEAVAASKAVSNELVPVAHLRGSNSSLKASSVSSPFVILLY*

Protein Length: 513

Fln nts: ATGGGGGAATCTTAAGAAGTCGTCGTGACCTTGGCTGTCACTCACCTTTTTTCCTCTCTATAAATGATAAATTTTAGCTATATTCAAATATGCTTGTGTTGTTATCATATTTTAACACAAATGCTACTCTCAATACATCCAGATTTCGATCTCAGCTGCAACTGTTTGGGTGTGGTGGATTTTCTTGATTGTTGACAGGGAATGCCGGCACTGTGCGGATCAAGGGCTTTCTTGGCCTAAAGAAATAGCAGTT_-_ATGATAAAGCAAATACTGGGCAGACTTCCCCGCAAACAATCTAAATCTGACCACCAGAATAACAGTAGCGATGTAGGAGGGGGGACTTCTTCGAATGCCGTCGCTTACAATTATGGGAATAAATTACCCCTTCCTTCTGTTTTGAGTAATGGAAGCTCGAAATCTCTCAGTAACAACTATGAACCTCTACCCTTTTTCAGGGATGTGCCCAGTTCTGACAGAGAAAATTTGCTCATCAAAAAATTGAGCCTATGTTCTGCTGTTTTTGATTTCACCGACCCCTACAAAAATGCGAGAGAGAAGGAAATTAAACGCCAAAACCTGCTGGACCTTGTTGATTTCATCATTTCAGGTAGTTGCAGGCTCAATGAAACAACAATGGAGGAGATTGCTAAGATGGTTTCTGCCAATTTGTTCAGGACTCTGACATCAAGACCTTCACCAGCACCACCTTCCATTGAAGGCCTTGATCCAGAAGAGGAGGTGTCAGCCTTGGAGCCTGCCTGGTCACATCTGCAGTTGGTCTATGATTTCCTCCTCAGGTTCGTAGCATCTCCCGAGACTGATGCAAAAATTGCCAAGAGATACATTGATCATTCATTTGTTCTGAGGTTAATGGATCTCTTTGATTCCGAGGACCCAAGAGAGAGAGAATGTCTGAAAACAATTTTGCATCGTATTTATGGCAAATTCATGGTGCACAGGCCCTTCATTCGTAAGGCAATCAACAACATTTTTTACAGATTTATATTTGAGACTGAGAAATTTAATGGAATAGCCGAGCTGCTAGAGATATTGGGTAGTATCATTAGTGGGTTTGCATTGCCACTGAAAGAGGAACACAAACTTTTCCTTGTCCGAACTTTGATACCATTACATAAACCGAAATGTTTGTCCTCATACCATCAACAATTATCCCATTGTATCATACAGTTTGTGGAAAAGGACTTCAAGCTAGCAGACACTGTGATAAGGGGATTGTTAAAGTACTGGCCTATCACAAATAGTCAGAAGGAGGTGCTTTTCCTCGTAGAATTGGAGCAAGTTTTGGAAATCACCCAGGCAGCTGAATTTCAGAGGTGTATGGTGCCCTTGTTTCGACAAATCGGGCGCTGCCTGAACAGTTCACACTTCCAGGTGGCTGAGCGTGCTTTGTTTCTGTGGAACAATGATCAAATTTTAAGTTTGATGGCACAACACCGATATGCAATATTGCCATTGATTTTCCCTTCTCTGGAGAAAAATATAAGAAACCACTGGAATCAACTTGTGCACAATTTGACTTGGAATGTGAGAAAGATGTTAATAGATATGGATCAAGATCTTTTCGAGGATTGCCAACGTAGGTTCCATGAAGAGGAAACAAAGGCAATACGCATACAAGAGCAGCGTGAAATGACATGGAAACGTTTGGAAGCAGTTGCTGCTTCAAAAGCTGTAAGTAATGAACTAGTGCCTGTAGCACATCTAAGGGGTAGCAATTCTAGTCTGAAAGCTTCGTCTGTCAGTTCACCATTTGTAATATTATTATATTAA___TCAATCCTTGGACAGGAAACTGAAGTAGTTGGAGGCATGTCACTTTTGTTTCGACCTCTTCCTTTCCAAGTGTATTGCAACATTTTATGACTGAGAGTGGGCTAAAAGTTGTCTTGCAGGTAAGTTTCTCTTGAGGAGGTCTTTTGGTCGAAAACTGCAAACTGAAATCAGAGTTTTGAGCTTTGGCTTCGAATTCCTTTTCCAAAAATAAATATTAAATTCTTTGCATATATCTGTTATATCATTCTTTTCCCTTGTGAGTTGGGCTGAAAGGAAGTTGGAAACAGAAATGGTTAAGGTATGGGTTCTTCATTATTGGTCAACCACATACTTGCTTTTAAGCATGAAGTTACTTTGGTTGGTCTACTGCCTTTCTACTCATGTTGTAAAGATTGTCAGGATTTTGCCTCTTTCCAGCTGGTAGATGTGCGTTGACTTGTCTCCTTCCAAATGCAATGCACCGCTGAGAGTCTACATGTGCCAAGAATGTTTCTGTGAATGTAGCTTGAAGAAAAATAGTATATTAGGTATTCAAAAATTTGGATTGCCAGAACTTTTGGTAACTGACCATGGTTCTAGCTTCCTTTCCACCCAGAATTATGATAACCTTTTCTGCCTTATTGCAGAAAGCCATTGATAGGCTTGAATTTAGTACAGGAAGTTATTGATGGAATTTGTTTATATGTGAGAAGTTTAGATTCTTATTACAAAATTGGAGTATATTTCTTCTGCTTAGTGCTTTGTTCACTAGTGATCTCTTGAATCTGAAATTATTCTATTACA

Fln Alignment:

Contig7711___MIKQILGRLPRKQSKSDHQNNSSDVGGGTSS------------------NAVAYNYGN-KLPXXXXXXXXXXXXXXXXYEPLPFFRDVPSSDRENLLIKKLSLCSAVFDFTDPYKNAREKEIKRQNLLDLVDFIISGSCRLNETTMEEIAKMVSANLFRTLTSRPSPAPPSIEGLDPEEEVSALEPAWSHLQLVYDFLLRFVASPETDAKIAKRYIDHSFVLRLMDLFDSEDPRERECLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKFNGIAELLEILGSIISGFALPLKEEHKLFLVRTLIPLHKPKCLSSYHQQLSHCIIQFVEKDFKLADTVIRGLLKYWPITNSQKXXXXXXXXXXXXXITQAAEFQRCMVPLFRQIGRCLNSSHFQVAERALFLWNNDQILSLMAQHRYAILPLIFPSLEKNIRNHWNQLVHNLTWNVRKMLIDMDQDLFEDCQRRFHEEETKAIRIQEQREMTWKRLEAVAASKAVSNELVPV
Q8RW96______________MIKQIFGKLPRKPSKSSHNDSNPNGEGGVNSYYIPNSGISSISKPSSKSSASNSNGANGTVIAPSSTSSNRTNQVNGVYEALPSFRDVPTSEKPNLFIKKLSMCCVVFDFNDPSKNLREKEIKRQTLLELVDYIATVSTKLSDAAMQEIAKVAVVNLFRTFPSANHESK-ILETLDVDDEEPALEPAWPHLQVVYELLLRFVASPMTDAKLAKRYIDHSFVLKLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLIRALIPLHRPKCASAYHQQLSYCIVQFVEKDFKLADTVIRGLLKYWPVTNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFRQIARCLNSSHFQVAERALFLWNNDHIRNLITQNHKVIMPIVFPAMERNTRGHWNQAVQSLTLNVRKVMAETDQILFDECLAKFQEDEANETEVVAKREATWKLLEELAASKSVSNEAVLV

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
1033	80		20		0.995493
1149	16			83	0.999991
1202	90		10		0.90298
1209		90		10	0.90298
1286	12			87	0.992554
1288	10		90		0.90298
1290	90			10	0.90298
1368	10		90		0.90298
1370	11		88		0.923564
1371		88		11	0.923564
1794	14			85	0.993533
1795		14		85	0.993533
1797	85			14	0.993533
1801	83			16	0.994512
2008	83	16			0.994512
2009	83		16		0.994512
2012	83		16		0.994512
2014			16	83	0.994512
2016	66	33			1.0
2017	83	16			0.994512
2020		80	20		0.995493
2021			20	80	0.995493
2022		20		80	0.995493
2027		20		80	0.995493
2028	80			20	0.995493
2029		20		80	0.995493
2088	88	11			0.923564
2091			88	11	0.923564
2093		11		88	0.923564
2095	88			11	0.923564
2096		11	88		0.923564
2097	11		88		0.923564
2142	83		16		0.999991
2253	88	11			0.999937
2266		11	88		0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain