SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7698

Length: 2134 nt

UniGene Fasta

>sp_v3.0_unigene7698
TCTGGGGGATTGTACCCTAAAAAGTGCATTGGCGTTGGCATGGGCTTTGTTCCATTTTTTTCCTATTGTTGCACCAGTTTAGATTTTATGCCGTTGAAAGGCGTATACATCAATCAATAATGGCGATGTCAATCTGTATTAGATCTTCCTGCTGCACAGACGTTTCTCGCCTCTGTACATTCCATACTCCTTATCACATTTCAAGGCCTTCCTTTCTAACATCTATCCAGCATCGTGGGTATCGACGAACCCATTTACAGTACAGAGGGTTGCAAGTTATGGCCTCTACTTCAACACAATCTAGCTCCGTTTCATCACACGGCCAGGCTTCAGATTTAAAGCAAGCACTAATATCTTTATCAGACAAACAAGACCTGGACCTCCTTGGCCGGGGTCTTCTGAATCTTGGATACACCATTGTTTCAACTGGTGGCACAGCATCTGCGCTGGAGCAGTCTGGAATACCTGTAACTAAAGTGGAAGAGCTTACTTGTTTTCCTGAGATGCTTGATGGTCGTATTCTTGCAAGAAAGGACAAGCAGCATCACATGGAAGATTTGAAGAAGCATGGAATTAGGACATTTGATGTGGTAGTTGTAAACCTTTATCCATTTTATGAGAAGGTTTCGTCACCTACTGGGATATCATTTGAGGATGGGGTTGAGAACATTGATATTGGTGGGCCAGCGATGATCAGGGCAGCTGCCAAGAACCACAAAGATGTCCTGGTGGTTGTCGATTTCACGGACTATCCTGCTCTCCTAAGATATTTGCAAGGTGAAGAGAATCAAGGAGGTGAGTATTTCCGAAGAAAGCTTGCATGGAAAGCTTTTCAGCATGTTGCTGCCTATGACTCAGCTGTATCAGAATGGCTTTGGAAGCAGCTTGGTAGAGAGGAGTTTCCACCAAGCTTAACTGTTCCACTTTCAATAAAGTCTCCTCTTAGATATGGTGAAAATCCTCATCAGAGGGCTGCATTTTACATTGATAAATCCCTATGTGAGGTGGAGACTGGAGGCATTGCAACTGCTGTACAACATCATGGAAAGGAAATGTCATATAATAACTATTTGGATGCAGATGCAGCATGGAATTGTGTTTCAGAATTCAAAAGTCCAACGTGTGTTATTGTAAAACATACAAATCCATGTGGCGTAGCATCTCGATCAGACACACTGGAAGCATACCGACTTGCAGTGAGAGCAGATCCTGTTAGTGCATTTGGTGGGATTGTAGCCTTCAATGTGGAAGTCAACGAGGATCTTGCTAAAGAAATTCGAGAATTTAGGAGCCCAATTGATGGAGAATCCCGAATGTTTTATGAAATTATAGTTGCTCCAAAGTACACCGAAAAGGGTCTTGAGATATTACAAGGGAAGTCAAAAAATCTTCGGATACTTGAAGCAAGTATGCCCAAAAGGGGAAAGCGGTCCCTCAGGCAAGTTGGAGGTGGATGGTTATTGCAAGATTCTGATGATTATACACCAGAGGATATTGGGTTTAATATTGTATCTGAAAGGATCCCCCAAGAAAATGAAATGGATGATACGAAGTTCGCATGGCTTTGTGTCAAGCATGTCAAAAGCAATGCAATTGTCATAGCAAAGAATAAGTGCATGCTTGGTATGGGCAGTGGCCAACCAAATCGTCTTGAAAGCTTGCGTATAGCTCTTCGAAAGGCAGGAGATGAAGTCAAAGGTGCAGCACTTGCTAGTGATGCATTTTTCCCTTTTGCTTGGAAAGATGCAGTGGAAGAGGCATGTGAAGCTGGTGTCGGTGCAATTGTTGAACCTGGTGGCAGCATAAGAGATCAAGATGCTATAGATTGTTGCAACAAGTATGGAGTGCCTCTCTTATTCACAACAATTAGACACTTTAGGCACTAATCTTGTGATATGTTCTTGTAATCCCATTTATTGTTGTTTGGATGGCTTTGGAAGAACAAGATATGCCATGAGCAGTTCTAGAGAGAGTTGATATTGGTGGGCAACCGATATAAATATTATGCTGAGGAACACACATTTTATAGTTTGTTAGTGCAGGTGGAAAGCTTACTGGAACGGAATTTTCGTTCTGACTATTTTGACTCTGATGTTTCCAAAATATGTATAAAATGTTGCATCTGCATGACTAC

Ace file of the UniGene sp_v3.0_unigene7698

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bifunctional purine biosynthesis protein, putative n=1 Tax=Ricinus communis RepID=B9SXJ1_RICCO	-	-	0.0	75%
FL-Next	tr=Bifunctional purine biosynthesis protein, putative; Ricinus communis (Castor bean).	-	-	0.0	79%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoribosylaminoimidazolecarboxamide formyltransferase.	EC:2.1.2.3	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Purine metabolism	00230	%
Sma3	One carbon pool by folate	00670	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	RCOM_0503930;

Source	InterPros	Term	Type	Identity
Sma3	AICARFT/IMPCHase bienzyme	IPR002695	-	-
Sma3		IPR013982	-	-
Sma3	Methylglyoxal synthase-like domain	IPR011607	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein chr2:14765347-14768269 REVERSE LENGTH=596	78%
RefSeq	Arabidopsis thaliana	NP_001189681.1	phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002314814.1	aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SXJ1

Fln msg: your sequence is shorter than subject: 589 - 617

Fln protein: MAMSICIRSSCCTDVSRLCTFHTPYHISRPSFLTSIQHRGYRRTHLQYRGLQVMASTSTQSSSVSSHGQASDLKQALISLSDKQDLDLLGRGLLNLGYTIVSTGGTASALEQSGIPVTKVEELTCFPEMLDGRILARKDKQHHMEDLKKHGIRTFDVVVVNLYPFYEKVSSPTGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDFTDYPALLRYLQGEENQGGEYFRRKLAWKAFQHVAAYDSAVSEWLWKQLGREEFPPSLTVPLSIKSPLRYGENPHQRAAFYIDKSLCEVETGGIATAVQHHGKEMSYNNYLDADAAWNCVSEFKSPTCVIVKHTNPCGVASRSDTLEAYRLAVRADPVSAFGGIVAFNVEVNEDLAKEIREFRSPIDGESRMFYEIIVAPKYTEKGLEILQGKSKNLRILEASMPKRGKRSLRQVGGGWLLQDSDDYTPEDIGFNIVSERIPQENEMDDTKFAWLCVKHVKSNAIVIAKNKCMLGMGSGQPNRLESLRIALRKAGDEVKGAALASDAFFPFAWKDAVEEACEAGVGAIVEPGGSIRDQDAIDCCNKYGVPLLFTTIRHFRH*

Protein Length: 590

Fln nts: TCTGGGGGATTGTACCCTAAAAAGTGCATTGGCGTTGGCATGGGCTTTGTTCCATTTTTTTCCTATTGTTGCACCAGTTTAGATTTTATGCCGTTGAAAGGCGTATACATCAATCAATA_-_ATGGCGATGTCAATCTGTATTAGATCTTCCTGCTGCACAGACGTTTCTCGCCTCTGTACATTCCATACTCCTTATCACATTTCAAGGCCTTCCTTTCTAACATCTATCCAGCATCGTGGGTATCGACGAACCCATTTACAGTACAGAGGGTTGCAAGTTATGGCCTCTACTTCAACACAATCTAGCTCCGTTTCATCACACGGCCAGGCTTCAGATTTAAAGCAAGCACTAATATCTTTATCAGACAAACAAGACCTGGACCTCCTTGGCCGGGGTCTTCTGAATCTTGGATACACCATTGTTTCAACTGGTGGCACAGCATCTGCGCTGGAGCAGTCTGGAATACCTGTAACTAAAGTGGAAGAGCTTACTTGTTTTCCTGAGATGCTTGATGGTCGTATTCTTGCAAGAAAGGACAAGCAGCATCACATGGAAGATTTGAAGAAGCATGGAATTAGGACATTTGATGTGGTAGTTGTAAACCTTTATCCATTTTATGAGAAGGTTTCGTCACCTACTGGGATATCATTTGAGGATGGGGTTGAGAACATTGATATTGGTGGGCCAGCGATGATCAGGGCAGCTGCCAAGAACCACAAAGATGTCCTGGTGGTTGTCGATTTCACGGACTATCCTGCTCTCCTAAGATATTTGCAAGGTGAAGAGAATCAAGGAGGTGAGTATTTCCGAAGAAAGCTTGCATGGAAAGCTTTTCAGCATGTTGCTGCCTATGACTCAGCTGTATCAGAATGGCTTTGGAAGCAGCTTGGTAGAGAGGAGTTTCCACCAAGCTTAACTGTTCCACTTTCAATAAAGTCTCCTCTTAGATATGGTGAAAATCCTCATCAGAGGGCTGCATTTTACATTGATAAATCCCTATGTGAGGTGGAGACTGGAGGCATTGCAACTGCTGTACAACATCATGGAAAGGAAATGTCATATAATAACTATTTGGATGCAGATGCAGCATGGAATTGTGTTTCAGAATTCAAAAGTCCAACGTGTGTTATTGTAAAACATACAAATCCATGTGGCGTAGCATCTCGATCAGACACACTGGAAGCATACCGACTTGCAGTGAGAGCAGATCCTGTTAGTGCATTTGGTGGGATTGTAGCCTTCAATGTGGAAGTCAACGAGGATCTTGCTAAAGAAATTCGAGAATTTAGGAGCCCAATTGATGGAGAATCCCGAATGTTTTATGAAATTATAGTTGCTCCAAAGTACACCGAAAAGGGTCTTGAGATATTACAAGGGAAGTCAAAAAATCTTCGGATACTTGAAGCAAGTATGCCCAAAAGGGGAAAGCGGTCCCTCAGGCAAGTTGGAGGTGGATGGTTATTGCAAGATTCTGATGATTATACACCAGAGGATATTGGGTTTAATATTGTATCTGAAAGGATCCCCCAAGAAAATGAAATGGATGATACGAAGTTCGCATGGCTTTGTGTCAAGCATGTCAAAAGCAATGCAATTGTCATAGCAAAGAATAAGTGCATGCTTGGTATGGGCAGTGGCCAACCAAATCGTCTTGAAAGCTTGCGTATAGCTCTTCGAAAGGCAGGAGATGAAGTCAAAGGTGCAGCACTTGCTAGTGATGCATTTTTCCCTTTTGCTTGGAAAGATGCAGTGGAAGAGGCATGTGAAGCTGGTGTCGGTGCAATTGTTGAACCTGGTGGCAGCATAAGAGATCAAGATGCTATAGATTGTTGCAACAAGTATGGAGTGCCTCTCTTATTCACAACAATTAGACACTTTAGGCACTAA___TCTTGTGATATGTTCTTGTAATCCCATTTATTGTTGTTTGGATGGCTTTGGAAGAACAAGATATGCCATGAGCAGTTCTAGAGAGAGTTGATATTGGTGGGCAACCGATATAAATATTATGCTGAGGAACACACATTTTATAGTTTGTTAGTGCAGGTGGAAAGCTTACTGGAACGGAATTTTCGTTCTGACTATTTTGACTCTGATGTTTCCAAAATATGTATAAAATGTTGCATCTGCATGACTAC

Fln Alignment:

Contig7698___KQALISLSDKQXXXXXXXXXXXXXYTIVSTGGTASALEQSGIPVTKVEELTCFPEMLDGR-----------ILARKDKQHHMEDLKKHGIRTFDVVVVNLYPFYEKVSSPTGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDFTDYPALLRYLQGEENQGGEYFRRKLAWKAFQHVAAYDSAVSEWLWKQLGREEFPPSLTVPLSIKSPLRYGENPHQRAAFYIDKSLCEVETGGIATAVQHHGKEMSYNNYLDADAAWNCVSEFKSPTCVIVKHTNPCGVASRSDTLEAYRLAVRADPVSAFGGIVAFNVEVNEDLAKEIREFRSPIDGESRMFYEIIVAPKYTEKGLEILQGKSKNLRILEASMPKRGKRSLRQVGGGWLLQDSDDYTPEDIGFNIVSERIPQENEMDDTKFAWLCVKHVKSNAIVIAKNKCMLGMGSGQPNRLESLRIALRKAGDEVKGAALASDAFFPFAWKDXXXXXXXXXXXXXXXPGGSIRDQDAIDCCNKYGVPLLFTTIRHFRH
B9SXJ1______________KQALISLSDKRDLALLGRGLQNLGYTIVSTGGTASSLESAGVSVTKVEQLTSFPEMLDGRVKTLHPNIHGGILARRDQKHHMEALNEHGIGTFDVVVVNLYPFYDKVTSSGQIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLDYLQGDQDD--QQFRRNLAWKAFQHVASYDSAVSEWLWKQTVGDKFPPSLTVPLSLKSSLRYGENPHQKAAFYVDKSISEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVVVKHTNPCGVASRDDILEAYRLAVKADPVSAFGGIVAFNIEVDEVLAKEIREFRSPTDGETRMFYEIVVAPKYTKKGLEVLRGKSKTLRILEAKKNEQGKLSLRQVGGGWLAQDSDDLTPQDIKFNFMSEKTPQESELNDAQFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIALKKAGDEVKGAALASDAFFPFAWNDAVEEACEAGVGVIAEPGGSIRDKDAIDCCNKYGVSLIFTNVRHFRH

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
376	14	85			0.993533
378			83	16	0.994512
507	20		80		0.995493
1701	16		83		0.994512
1704		83	16		0.994512
1705	83		16		0.994512
1712			83	16	0.994512
1989	11		88		0.923564
1992	88			11	0.923564
1993		88		11	0.923564
1994		87		12	0.992554
2024		18		81	1.0
2135	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain