SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7692

Length: 1906 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7692

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SE49_RICCO	-	-	0.0	61%
FL-Next	sp=tRNA dimethylallyltransferase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Isopentenyl transferase	-	-	4.86e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 2.5.1.75.	EC:2.5.1.8	-	2.514e-07	-

Source	Gene names
Sma3	At5g20040; AtIPT9; GSVIVT00023375001; GSVIVT00027788001; IPT; IPT1; MICPUCDRAFT_3167; MICPUN_68379; OSJNBa0069C14.20; Os06g0729800; OsIPT10; OsI_24543; OsJ_22787; PHYPADRAFT_165772; PHYPADRAFT_172286; PHYPADRAFT_231686; PHYPADRAFT_67435; PHYPADRAFT_85626;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3		GO:0004811	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	tRNA isopentenyltransferase	IPR002627	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	tRNA delta(2)-isopentenylpyrophosphate transferase	IPR018022	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20040.3	IPT9 isopentenyltransferase 9 chr5:6767939-6770980 REVERSE LENGTH=469	54%
RefSeq	Arabidopsis thaliana	NP_851043.1	tRNA dimethylallyltransferase 9 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002300421.1	tRNA isopentenyltransferase [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C5J6

Fln msg:

Fln protein: MLLHGRYVHASISENICVWYGGCSFRASLLLVSSVNPFWMTNANSMRFETMSWSSQVKHKKPKVIVISGPTGVGKSRLALQLAKRIGGEIISADSVQVYRGLDVGSAKTLIGDRQDIPHYLLDILHPTEEYSAGKYFDAAREATKDVLHRGHVPIVVGGSGLYLRWYLYGKPDVPETSPEIVSDVNVELRTLQSNGDWDTAVQLLLKAGDSTACNVERNDWYRIRRGLEIIKAAGVPRTSFPLPYDALKGQVASRITVSCSDSSDAEAENMQSSLTELDYDFLCFFLSVKRTDLYQRIDQRCEEMLTGSNGILAEASWLLDMGILPNTTCASRAIGYRQAMEYLFRCRQERGVSSEKEFYAFLSEFQTASRNFAKRQLTWFRNEPLYQWLDASQSLEKLVNFVVDTYRDSADASLHQSLTVNKINSSKELKDLERYRTQNRYFVSSNDCAPILEWIRLTQSGKEVT*

Protein Length: 468

Fln nts: CAATCTACAAATTCCAGAAACTCGCTCCCAGACGACATTGATTTTTCCATTTAAGTTTCATACGAA_-_ATGCTTCTCCATGGAAGGTATGTCCATGCATCCATATCTGAGAATATATGTGTATGGTATGGAGGTTGTTCGTTCCGGGCAAGCCTTCTACTAGTATCCAGCGTAAATCCTTTTTGGATGACAAATGCCAACTCGATGAGATTCGAAACCATGTCCTGGTCCAGCCAAGTGAAACACAAGAAGCCCAAGGTGATTGTAATATCAGGTCCCACGGGCGTCGGTAAAAGCAGACTCGCATTGCAATTGGCCAAGAGAATAGGCGGTGAAATCATCAGTGCTGATTCCGTGCAGGTTTACAGGGGTTTAGATGTTGGATCAGCAAAAACTCTTATTGGAGATCGTCAGGATATACCGCACTACTTACTCGACATTTTACATCCCACTGAAGAGTATTCCGCTGGCAAATACTTTGATGCTGCTAGAGAAGCCACGAAAGATGTTCTTCATAGAGGGCATGTACCAATAGTTGTTGGTGGTAGTGGGTTGTACTTACGATGGTATTTGTATGGCAAGCCGGATGTGCCAGAAACATCTCCTGAAATTGTCTCTGATGTGAACGTGGAGCTTAGAACACTCCAGAGCAATGGTGACTGGGATACAGCTGTGCAGCTTCTTCTGAAAGCAGGTGATTCCACTGCTTGTAATGTGGAGCGCAATGATTGGTACCGCATTCGTCGTGGCCTTGAAATCATTAAGGCTGCTGGAGTTCCTCGAACTTCATTTCCTCTACCATATGATGCTCTCAAAGGACAAGTAGCCTCAAGAATAACAGTTTCCTGCAGTGATAGCTCTGATGCAGAAGCTGAAAACATGCAGAGTTCCTTGACAGAATTGGACTATGACTTTCTCTGCTTTTTTCTTTCAGTTAAAAGGACAGATCTTTATCAGAGAATTGATCAGCGGTGTGAGGAGATGCTTACAGGGAGCAATGGGATTTTGGCTGAAGCCTCTTGGCTCTTGGATATGGGAATTCTTCCTAATACAACTTGCGCATCTCGTGCAATTGGTTATCGACAAGCTATGGAATATTTGTTCAGGTGCAGACAAGAAAGAGGTGTCAGTTCTGAGAAGGAGTTCTATGCATTTCTCTCTGAATTTCAAACGGCGTCCAGGAATTTCGCAAAGCGACAACTAACATGGTTTCGTAATGAACCACTATATCAATGGCTTGATGCTTCACAGTCATTGGAAAAACTGGTAAATTTTGTTGTGGATACATATCGTGATTCTGCTGACGCGTCCCTTCACCAATCACTTACAGTTAATAAAATAAATAGCAGCAAGGAGTTAAAAGACTTGGAGCGCTATCGAACTCAAAACAGGTACTTTGTCAGTTCAAATGATTGTGCTCCTATTTTAGAATGGATCCGGTTGACCCAAAGTGGGAAAGAAGTAACCTAG___CATGCTCCCCTCGATCAACTTACTGCCATCTATAAAGTAACTTACATATCTATAGCTCTCCTGTGGCCATTATAGCTATGTTCTTTTCCGAGTGCTAAACATGATTTTCCTCTGGAGACCTTCAGAAATTTGGTCAACAAATGCAAGCTTCTCTATATGTTTTGTTTGTTTCTCATTAATGATTATTTTTTCATGAAGTGATCCGACCTTACATAAGATAGGGCCACCTTTCCCTGAGAAGCACATTAAGATGAATCCAGTCAGATTTGTTCACTTCTTTGTACTCCATTCTTTCAAGGACTAAGACGAATCCCATTTACAATGCTTTCTTCATTAGGAAACTTCTATCTAATATGTTCTATTGATGTGTTACAAATTATTATAATGATTAACATCAGCAATTGCTTCAGGGCTTAATCAAAGCTGAAAACTCAATTCA

Fln Alignment:

Contig7692___MSWSSQVKHKKPKVIVISGPTGVGKSRLALQLAKRIGGEIISADSVQVYRGLDVGSAKTLIGDRQDIPHYLLDILHPTEEYSAGKYFDAAREATKDVLHRGHVPIVVGGSGLYLRWYLYGKPDVPETSPEIVSDVNVELRTLQSNGDWDTAVQLLLKAGDSTACNVERNDWYRIRRGLEIIKAAGVPRTSFPLPYDALK-GQVASRITVSCSDSSDAEAENMQSSLTELDYDFLCFFLSVKRTDLYQRIDQRCEEMLTGSNGILAEASWLLDMGILPNTTCASRAIGYRQAMEYLFRCRQERGVSSEKEFYAFLSEFQTASRNFAKRQLTWFRNEPLYQWLDASQSLEKLVNFVVDTYRDSAD-ASLHQSLTVNK-INSSKELKDLERYRTQNRYFVSSNDCAPILEWIR
Q9C5J6______________LNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRLNGEIISADSVQVYKGLDVGSAKPSDSDRKVVPHHLIDILHPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGGTGLYLRWFMYGKPDVPKPSPEVIAEAHDMLVGFQTEYNWDAAVELVVNAGDPKASSLPRNDWYRLRRSLEILKSTGSPPSSFRIPYDSFRVNLVAPDADDFLEDGSSADI-SIQNIETDLDYDFLCFFLSSPRVALYRSIDFRCEDMLSGPNGVLSEARWLLDLGLLPNSNPATRAIGYRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESLRMSKDVRDSREASELKGYRSKNRHFVRREDCSSVLEWIR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
399	66		33		0.997452
434		66		33	0.997452
747	25		75		0.996473
779	20			80	0.995493
781	20	80			0.995493
783		80		20	0.995493
848	20	80			0.995493
851		60	20	20	0.99255
863		20		80	0.995493
1215	33			66	0.997452
1217			33	66	0.997452
1218		66	33		0.997452
1354			83	16	0.994512
1355		83		16	0.994512
1638	25			75	0.996473
1639		25	75		0.996473
1640	25			75	0.996473
1662	25			75	0.996473
1663		25		75	0.996473
1664	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain