SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7680

Length: 2324 nt

UniGene Fasta

>sp_v3.0_unigene7680
AGCACTCTGTCCGGCGTATGACAGCCTGCCGGATGGACCAAACTAAAGGTGATGTCCCTCGTGGCAGGAGCACATTCGATGACCAACAGCCTGGAAGCCACAGAAACAGATTCCACGTCATCACGACGAGCCCCCGATTGAAACGGCAATATTTAGTATGGCCCATGGGCACCCGTCTCAGATCTACATAACCAGTTTATTTCATTCGTCTTGCTCGAAGATTCGAGCGAAACGATGGGGTGTTGTTTCTCAGACATCGCTGGCGCGCAGCAGGCGGTGGGTAGCGTCAATGCGGACAAATACACGGTGGGCGCCAATGAGGCTTACAGTGCAGTTCAAAATTTCTTGAAGTCCCGCGGAGTTGAGGGCCTTTCATATCTAATGGAGTTATCATTGTCTGCATCTAATCTGCGTGACCGGGATATACTTTCCAAGAGTGATCCTATGGCTGTTGTATATACAAAGAAACAAGATGGATCATTTGAAGAACTAGGTCGTACTGAAGTAATTTTAAATTCTTTGGAACCTCTCTGGATAACAAAACAAAGAATCATATACTATTTTGAGATTCTCCAGCCATTACTTTTCAGAGTGTATGATGTTGATAGCAAGTTTCACAATGTACCAGCCAAGATGCTTCGTTTGGATGAACAACAATTTCTTGGGGAGGCAGAATGTTTTCTGTCAGAGATAGTGACAAAACCAGGTAGAATTCTGACCCTCCCACTCAGACAAGGAACTGAACACAAAGGACCAAGCCCGCGGCTACCAAAATTTGGAGAGATAACTCTACAAGTGGAGGAGACTATCGATTCAAAAACTATGGTTGAGATGGTTTTCCGCTGTGCTGATCTTCCAAACAAGGATCTATTCTCCAAAAGTGACCCTTTTTTAAAGATATTCAGATCAGTTGAAAATGGGCGTTTTGTCCCAGTGTGTAAGACAGAAGTTAAAATGAATGACCTCAATCCACTATGGAAACCATTGACTTTGAGCATACAACAGATTGGGAGAAAGGATAACCTGTTAATGATTGACTGTTACAATTTCAACAATAGTGGGAATCATGAATTGATTGGAAGGATGCAAAAATCGTTGGGTGACCTTGAGAAGCTTTATATAAGTAGGAGTGGAGAAAACTTCTATTTACCAACAGGCAGTAGTAATAATCATAACAAGATATTGAAGGGTCAGTTATTTGTAGAAAAGTTCTCAGCAAGCACAAAACATAGTTTCTTGGACTACATTGCCAATGGGTACGAGTTAAACTTCATGGTGGCTATAGATTTTACAGCTTCGAATGGGAATCCACGGTTACCAGATTCTTTGCACTATCTCGACCCTTCGGGCCGGTTTAATGCATATCAGAGAGCAATCTCATCGGTTGGTGAAGTCCTGGAGTTTTATGACACTGACAAACGGTTTACTGCATGGGGTTTTGGAGGCAGACCAATTGATGGGCCAGTTTCTCATTGTTTCAATTTGAATGGAAGTGGTAGCCATGCTGAGGTTGAAGGGATAAGTGGTATTATGTCTGCATATGCAAGTGCCTTACGTAATGTTGCACTTGCTGGACCAACTTTATTTGGTCAAGTGATCAATTGTGCAGCTCAAACTGCTGATATAAATGCAGGACAGCGGAAATACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGGTGTTGGTGGGGCAGATTTTAAAGAAATGGAGATCCTGGATGCAGATAAAGGCGAACCATTAGAAAGTTCCACTGGACGAGTCGCGACACGTGATATAGTGCAATTTGTTCCCCTGCGGAATTTGCCGAGTGAAGAAACAATTGCACAATCGCTGTTAGCTGAACTGCCCATGCAATTTTTGAGTTATATGAAGAGCAGAAATATAGAACCTGTTGTGCTAGAGAGTTGATTCACCGAAATGTAGTTTTGACAGATCTGAGCTGGTTTGGTCGAAAATCTCTATTCTGATGTGCTACATCTTTTGACAGAACTGATCATGAATAGTGTTCCTTTTTGTACTGGTTTCTTTCATGTACAGAAAGAATATTTTTTGGGCGCTGCAAATATTTTAGTCTGGCATAATATGCTCATTTAACTACGTCCCCTGATGCAAAACCAGCAGGAATATATGATGGACAATGTATTCATTACCGATTTCTGTAAAGATCAAGTAAAATGTTTATTGATGTAAATTACTGTAATAATAAAGCATGAACTTTGCCTTTCTTTTCCTCATTGAAAAGGAAATGTGAC

Ace file of the UniGene sp_v3.0_unigene7680

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] ref\|NP_974977.1\| calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana] sp\|Q941L3.2\|BON1_ARATH RecName: Full=Protein BONZAI 1; AltName: Full=COPIN	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Copine	IPR010734	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G61900.1	BON1, CPN1, BON Calcium-dependent phospholipid-binding Copine family protein chr5:24855908-24859150 REVERSE LENGTH=578	62%
RefSeq	Arabidopsis thaliana	NP_974977.1	calcium-dependent phospholipid-binding copine-like protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002318175.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLG3

Fln msg:

Fln protein: MGCCFSDIAGAQQAVGSVNADKYTVGANEAYSAVQNFLKSRGVEGLSYLMELSLSASNLRDRDILSKSDPMAVVYTKKQDGSFEELGRTEVILNSLEPLWITKQRIIYYFEILQPLLFRVYDVDSKFHNVPAKMLRLDEQQFLGEAECFLSEIVTKPGRILTLPLRQGTEHKGPSPRLPKFGEITLQVEETIDSKTMVEMVFRCADLPNKDLFSKSDPFLKIFRSVENGRFVPVCKTEVKMNDLNPLWKPLTLSIQQIGRKDNLLMIDCYNFNNSGNHELIGRMQKSLGDLEKLYISRSGENFYLPTGSSNNHNKILKGQLFVEKFSASTKHSFLDYIANGYELNFMVAIDFTASNGNPRLPDSLHYLDPSGRFNAYQRAISSVGEVLEFYDTDKRFTAWGFGGRPIDGPVSHCFNLNGSGSHAEVEGISGIMSAYASALRNVALAGPTLFGQVINCAAQTADINAGQRKYYVLLIITDGVITDLQETKDAIIRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLPSEETIAQSLLAELPMQFLSYMKSRNIEPVVLES*

Protein Length: 583

Fln nts: AGCACTCTGTCCGGCGTATGACAGCCTGCCGGATGGACCAAACTAAAGGTGATGTCCCTCGTGGCAGGAGCACATTCGATGACCAACAGCCTGGAAGCCACAGAAACAGATTCCACGTCATCACGACGAGCCCCCGATTGAAACGGCAATATTTAGTATGGCCCATGGGCACCCGTCTCAGATCTACATAACCAGTTTATTTCATTCGTCTTGCTCGAAGATTCGAGCGAAACG_-_ATGGGGTGTTGTTTCTCAGACATCGCTGGCGCGCAGCAGGCGGTGGGTAGCGTCAATGCGGACAAATACACGGTGGGCGCCAATGAGGCTTACAGTGCAGTTCAAAATTTCTTGAAGTCCCGCGGAGTTGAGGGCCTTTCATATCTAATGGAGTTATCATTGTCTGCATCTAATCTGCGTGACCGGGATATACTTTCCAAGAGTGATCCTATGGCTGTTGTATATACAAAGAAACAAGATGGATCATTTGAAGAACTAGGTCGTACTGAAGTAATTTTAAATTCTTTGGAACCTCTCTGGATAACAAAACAAAGAATCATATACTATTTTGAGATTCTCCAGCCATTACTTTTCAGAGTGTATGATGTTGATAGCAAGTTTCACAATGTACCAGCCAAGATGCTTCGTTTGGATGAACAACAATTTCTTGGGGAGGCAGAATGTTTTCTGTCAGAGATAGTGACAAAACCAGGTAGAATTCTGACCCTCCCACTCAGACAAGGAACTGAACACAAAGGACCAAGCCCGCGGCTACCAAAATTTGGAGAGATAACTCTACAAGTGGAGGAGACTATCGATTCAAAAACTATGGTTGAGATGGTTTTCCGCTGTGCTGATCTTCCAAACAAGGATCTATTCTCCAAAAGTGACCCTTTTTTAAAGATATTCAGATCAGTTGAAAATGGGCGTTTTGTCCCAGTGTGTAAGACAGAAGTTAAAATGAATGACCTCAATCCACTATGGAAACCATTGACTTTGAGCATACAACAGATTGGGAGAAAGGATAACCTGTTAATGATTGACTGTTACAATTTCAACAATAGTGGGAATCATGAATTGATTGGAAGGATGCAAAAATCGTTGGGTGACCTTGAGAAGCTTTATATAAGTAGGAGTGGAGAAAACTTCTATTTACCAACAGGCAGTAGTAATAATCATAACAAGATATTGAAGGGTCAGTTATTTGTAGAAAAGTTCTCAGCAAGCACAAAACATAGTTTCTTGGACTACATTGCCAATGGGTACGAGTTAAACTTCATGGTGGCTATAGATTTTACAGCTTCGAATGGGAATCCACGGTTACCAGATTCTTTGCACTATCTCGACCCTTCGGGCCGGTTTAATGCATATCAGAGAGCAATCTCATCGGTTGGTGAAGTCCTGGAGTTTTATGACACTGACAAACGGTTTACTGCATGGGGTTTTGGAGGCAGACCAATTGATGGGCCAGTTTCTCATTGTTTCAATTTGAATGGAAGTGGTAGCCATGCTGAGGTTGAAGGGATAAGTGGTATTATGTCTGCATATGCAAGTGCCTTACGTAATGTTGCACTTGCTGGACCAACTTTATTTGGTCAAGTGATCAATTGTGCAGCTCAAACTGCTGATATAAATGCAGGACAGCGGAAATACTATGTCCTCCTTATCATCACGGATGGAGTCATTACTGATCTTCAAGAAACAAAGGATGCCATCATCAGGGCTTCAGATCTGCCTCTTTCAATTCTTATTGTGGGTGTTGGTGGGGCAGATTTTAAAGAAATGGAGATCCTGGATGCAGATAAAGGCGAACCATTAGAAAGTTCCACTGGACGAGTCGCGACACGTGATATAGTGCAATTTGTTCCCCTGCGGAATTTGCCGAGTGAAGAAACAATTGCACAATCGCTGTTAGCTGAACTGCCCATGCAATTTTTGAGTTATATGAAGAGCAGAAATATAGAACCTGTTGTGCTAGAGAGTTGA___TTCACCGAAATGTAGTTTTGACAGATCTGAGCTGGTTTGGTCGAAAATCTCTATTCTGATGTGCTACATCTTTTGACAGAACTGATCATGAATAGTGTTCCTTTTTGTACTGGTTTCTTTCATGTACAGAAAGAATATTTTTTGGGCGCTGCAAATATTTTAGTCTGGCATAATATGCTCATTTAACTACGTCCCCTGATGCAAAACCAGCAGGAATATATGATGGACAATGTATTCATTACCGATTTCTGTAAAGATCAAGTAAAATGTTTATTGATGTAAATTACTGTAATAATAAAGCATGAACTTTGCCTTTCTTTTCCTCATTGAAAAGGAAATGTGAC

Fln Alignment:

Contig7680___MGCCFSDIAGAQQAVGS--VNADKYTVGAN----EAYSAVQNFLKSRGVEGLSYLMELSLSASNLRDRDILSKSDPMAVVYTKKQDGSFEELGRTEVILNSLEPLWITKQRIIYYFEILQPLLFRVYDVDSKFHNVPAKMLRLDEQQFLGEAECFLSEIVTKPGRILTLPLRQGTEHKGPSPRLPKFGEITLQVEETIDSKTMVEMVFRCADLPNKDLFSKSDPFLKIFRSVENGRFVPVCKTEVKMNDLNPLWKPLTLSIQQIGRKDNLLMIDCYNFNNSGNHELIGRMQKSLGDLEKLYISRSGENFYLPTGSSNNHNKILKGQLFVEKFSASTKHSFLDYIANGYELNFMVAIDFTASNGNPRLPDSLHYLDPSGRFNAYQRAISSVGEVLEFYDTDKRFTAWGFGGRPIDGPVSHCFNLNGSGSHAEVEGISGIMSAYASALRNVALAGPTLFGQVINCAAQTADINAGQRKYYVLLIITDGVITDLQETKDAIIRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLPSEETIAQSLLAELPMQFLSYMKSRNIEP
B8LLG3______________MGCCFSDIAGGQQAVGGTGVNEDRYTMNPDQADREAFSAVKTFMNSRGLNALSYQFELSLSASNLRDRDILSKSDPMAVVYTKKQDGSLEELGRTEVILNSLDPLWITKQRVIYFFEILQPLLFRVYDVDSKFHSVPAKMLRLDEQQFLGEAECFLSEIVTKPGRILTLPLRQGAEHKGPSPRVQKFGELILQVEETIDSKTMVEMVFRCTDLPNKDLFSKSDPFIKISRPVQNGRFIPLCKTEVKMNDLNPVWKPLTLSIQQIGSKDNPLIIDCYNFNNSGNHELLGRMQKSLDDLEKLCISKSGENFYLPTGNNNHHNKILKGHLFVEKFSTSTKPSFLDYIANGYELNFMVAIDFTASNGNPRLPDSLHYMDPSGRSNAYQRAIWSVGEVLEFYDTDKRFPAWGFGGRPIDGPVSHCFNLNGSGSYAEVEGISGIMSAYASALRNVSLAGPTLFGQVINSAAQIADIHAGQRKYYVLLIITDGVITDLQETKDAIVRASDLPLSILIVGVGGADFKEMEILDADKGEPLESSTGRVATRDIVQFVPLRNLQSEETVAQSLLAELPMQFLSYMKSRHIEP

SNPs (tot: 3)

Position	C %	G %	T %	Probability
2297	50	50		1.0
2300	33		66	1.0
2301	63		36	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain