SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7598

Length: 3216 nt

UniGene Fasta

>sp_v3.0_unigene7598
ATGGGGACGCGTTAAAAGGCGTTACCGACACTGGATACATGGGATTTGGGTCGGCTTGCATTGCTATAGAATTTATTATTGACTCCTTCCAAATTTAGGTTAATTAGTTTCCAGCTTCCATCCACCCAATTTGCTTTTGCATGGCACGCTAAATACTTGCCCCTAAAGAAAATATTAATAGTTCAAACTTTCTGAAAAGGAGATCTAAGGTCCCCAAGTCCAGCATTCGATTGCAAGTTCTCATTCTTTCGGTGGCCTAATTGGACGGAGGAGAATCCATCGAGCAGCTGTGCGGAGGGCACAGGGCCGTATGATTGTGGTCAACGAGATAATTCTCTCCATTGCAGAGCATCTGTTTCTACCCATCTCGAATATTTAACGTTTTGGTTTTTGAAGAGTTTATCAGAAAGTCACACTGCCTCTCTTTGGCTTCTTGCAAACTGAAGAATTTTTGTTGAATTATACTGAAAAAGTCTCCGATTTGAAGGGTTATATTCTAGGTTGGATCAAGGTCTGTGATCATCTGCAATCGATATGAGTTTCCTCTTCGGAAAAAAGAAGACTCCTGCAGAGCTTCTGCGGGAGAACAAACGCATGCTAGACAGATCTATTCGTGAAATAGAAAGGGAAAGGCAAGGTTTACAAAACCAGGAGAAGAAGCTTATTACAGAGATTAAGAAGACCGCAAAGCAAGGGCAAATGGCTGCTGTGAAGGTCATGGCAAAGGATCTAATTCGAACAAGGCATCAAATAACAAAATTTTATGCACTGAAGTCACAGCTTCAAGGCATCTCTCTCCGCATCCAGACTCTTAAATCAACTCAAACCATGGGGAAGGCAATGAAGGGTGTCACCAAAGCAATGAGGCAGATGAACAGGCAGATGAATTTACCAGCATTGCAGAAAATAATGCAAGAATTTGAGAGACAAAATGAACGAATGGAAATGGTTACAGAGGTTATGGGTGATGCAATTGATGATGCTTTGGAAGGAGATGAAGAAGAAGAAGAAACAGAAGAACTTGTCAGTCAAGTTTTAGATGAGATTGGAATTGATATCGATTCTCAGCTGATAAAGGCTCCAGCAACTTCAGTGGCTGCACCTGCAGCACCGACCAAAGTTGCCCAAGCAACTGCAACTAGTGCCGAGGACCCAGGTATTGATGATGATCTACAAGCAAGACTTGATAATCTGAGGAAGATGTAAATTGATATGTATGGCAGCGGAGGCAGTGGAGGCAGTAGCGATTTCTCTAGTTATGGATCGGATACCAACGTTCCCGATCACCATTTCAAGAACTATGGCACCGACAGTAACGAAGTCAATCAGGATTTCACCAGCTACGGCGACAACTCCAATGTCATACAGAATGACTTCGCGACCTACGGGAAGGACGCCAACGCCATTTCGACTGGCTTCACAAGCTATGCCCAAAGCTCCAATGTTATCACCAACAGTTTCAAAGGCTACAGTGAGAACGGCAACGGCCCCCTTGATCGATTTACTTCATATGCAGACAACGGCAACGTCCCCAGAAATGAGTTTGAAAGCTACGGCGCCAACGGAAATGGGGCCTTGCAAACCTTCACCAATTATGCAGACGGCGCCAATGTACCCCAAGATATTTTCAAGTCCTATGGGAAGGATGCCAATACTCCTCTTGTTACATTCAATAACTACGGGAATTCGTCAAACTCTCAGCAGGATGAATTCAAGCAATACGGAAAGGGTTCCAACAGTCCTCTCATGCAGTTCACCAGCTACGCCAAAAACACCCAATTCACGCAGTATGACAAGAACGGCACAGACGCAACATTCTCATCCTACACTAACTCCACTACTTCCGCCTCCCGCGTGGAAGCGGGGAAGTTCTTCCGAGAGAATCTGCTGGTCCAAGGTTCGAGTCTCCCTTTGCCCAACCTGAAAGATTACATGCCCAGGAGATCATTCCTGCCTCGATCTCTGGCCGACAAGCTTCCCAGCTTCAGCAGCCAAAGCTTGGGAGAGCTGGTACGAATGTTCAGCATTCCAGAGAATTCGAGCATGGAGGGAATGATGGCGAAGACGCTAAAAGAATGTGAACGCCCGGCGGTGAAGGGGGAAATAAAGAAATGTGTGACATCGATAGAAGGAATGGCAGAATTTGCGGTGGGGATATTGGGGGCGAAGGTGGAGGTGCTGACCACAGCGAGCACGGCGGGATCTGGAGAGCGCGTCAAAGTCGGGGAAGTGAAGGGGAAAGATGGAGGGAGAGTGACGAGGTCGGTATCGTGCCATCAGAGTATGTTTCCGTATCTCGTCTATTATTGCCATTCAGTGCCCAAGGTGAAGGTGTATGAGGCTGCACTCATGCGCAACTCCACTTCTAAGGCCCAGAAAATAAACGATGGAGTGGCCATCTGCCATTTGGATACCACGGAGTGGAGTGCAGGGCATGCTGCATTCGTGGCGTTGGGACATAAGCCCGGCCAGATCGAGGTCTGCCACTGGATATTCGAAAACGATCTCATCTGGGTACCTCTACCCTGATGTGATCGTAACCATATTTGCTACCCTGCCATCTTACGAAATAAAGACGATGCACCGCATCTGTAAGCACCGTTCAATAAATAAATTATTTGGTCAAATGATGGCGAAGTAATTTTTTCTACTGTTGAGATGTATTTCTTCATCTTTTGGAATGAATGTCATCATCTCTTCCTTCCCCTTTAACTCGATAGGAATATATGATGCATTACGTGCCTCTTAGAACTAGATTGCAATCACCATAATGAATTGGAGATACGAGTAGTTAACAATCGGCGGACTTACTATTGAATCTCCAGCTCATTCAGTGCCTTGTGTTGAGTGTTATCTCTGATGTGGTATCAGAGTGAGTCGTGATACCAACTGAATTGCTCTGTTGCTTCAGCTGCTGGCTCGGCGGGAAAAAGAGCTGTCCAAGAGGTTGTAAGAGATCCCCAGTGCCGTGAAGGAGCATTCTGCAAGGAGTCCTGTGCTGTGAGAGTGCCGTAATCGAAGCCTCCAACATCTGAATTCAGCTGTGAATGTAAGGGTTTGGCCGACCTGTGGGAGTTGAGATTAAGTTGCAATGCCCTTTCATCTTGTAATGTGTGCGAGACGCTGATTGACCTGTCCCTCACCGCTGAAAGGGCACGAAAATACTGAAAGCTAAACTGTTGCAGACAAAGAGATAGAGATGAAAAGTTTGATTTT

Ace file of the UniGene sp_v3.0_unigene7598

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Charged multivesicular body protein 2a, putative	-	-	5.721e-12	-

Source	Gene names
Sma3	AROGP3; At1g03950; At1g23760; At1g60390; At1g70370; At2g06530; At5g44560; B1394A07.17; BURP12; BURP14; BURP16; CHLREDRAFT_185193; CHLREDRAFT_195566; CHM2A; CHMP2-1; CHMP2-2; CHMP2-3; F17O7.9; F21M11.12; F5O8.31; GP1; GP2; GP3; GSVIVT00002686001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BURP domain	IPR004873	-	-
Sma3	Snf7	IPR005024	-	-
Sma3	Zinc finger, LSD1-type	IPR005735	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G70370.1	PG2 polygalacturonase 2 chr1:26513003-26514998 REVERSE LENGTH=626	49%
RefSeq	Arabidopsis thaliana	NP_001185361.1	putative polygalacturonase non-catalytic subunit JP650 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002314620.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLB0

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 439 - 666

Fln protein: MYGSGGSGGSSDFSSYGSDTNVPDHHFKNYGTDSNEVNQDFTSYGDNSNVIQNDFATYGKDANAISTGFTSYAQSSNVITNSFKGYSENGNGPLDRFTSYADNGNVPRNEFESYGANGNGALQTFTNYADGANVPQDIFKSYGKDANTPLVTFNNYGNSSNSQQDEFKQYGKGSNSPLMQFTSYAKNTQFTQYDKNGTDATFSSYTNSTTSASRVEAGKFFRENLLVQGSSLPLPNLKDYMPRRSFLPRSLADKLPSFSSQSLGELVRMFSIPENSSMEGMMAKTLKECERPAVKGEIKKCVTSIEGMAEFAVGILGAKVEVLTTASTAGSGERVKVGEVKGKDGGRVTRSVSCHQSMFPYLVYYCHSVPKVKVYEAALMRNSTSKAQKINDGVAICHLDTTEWSAGHAAFVALGHKPGQIEVCHWIFENDLIWVPLP*

Protein Length: 440

Fln nts: ATGGGGACGCGTTAAAAGGCGTTACCGACACTGGATACATGGGATTTGGGTCGGCTTGCATTGCTATAGAATTTATTATTGACTCCTTCCAAATTTAGGTTAATTAGTTTCCAGCTTCCATCCACCCAATTTGCTTTTGCATGGCACGCTAAATACTTGCCCCTAAAGAAAATATTAATAGTTCAAACTTTCTGAAAAGGAGATCTAAGGTCCCCAAGTCCAGCATTCGATTGCAAGTTCTCATTCTTTCGGTGGCCTAATTGGACGGAGGAGAATCCATCGAGCAGCTGTGCGGAGGGCACAGGGCCGTATGATTGTGGTCAACGAGATAATTCTCTCCATTGCAGAGCATCTGTTTCTACCCATCTCGAATATTTAACGTTTTGGTTTTTGAAGAGTTTATCAGAAAGTCACACTGCCTCTCTTTGGCTTCTTGCAAACTGAAGAATTTTTGTTGAATTATACTGAAAAAGTCTCCGATTTGAAGGGTTATATTCTAGGTTGGATCAAGGTCTGTGATCATCTGCAATCGATATGAGTTTCCTCTTCGGAAAAAAGAAGACTCCTGCAGAGCTTCTGCGGGAGAACAAACGCATGCTAGACAGATCTATTCGTGAAATAGAAAGGGAAAGGCAAGGTTTACAAAACCAGGAGAAGAAGCTTATTACAGAGATTAAGAAGACCGCAAAGCAAGGGCAAATGGCTGCTGTGAAGGTCATGGCAAAGGATCTAATTCGAACAAGGCATCAAATAACAAAATTTTATGCACTGAAGTCACAGCTTCAAGGCATCTCTCTCCGCATCCAGACTCTTAAATCAACTCAAACCATGGGGAAGGCAATGAAGGGTGTCACCAAAGCAATGAGGCAGATGAACAGGCAGATGAATTTACCAGCATTGCAGAAAATAATGCAAGAATTTGAGAGACAAAATGAACGAATGGAAATGGTTACAGAGGTTATGGGTGATGCAATTGATGATGCTTTGGAAGGAGATGAAGAAGAAGAAGAAACAGAAGAACTTGTCAGTCAAGTTTTAGATGAGATTGGAATTGATATCGATTCTCAGCTGATAAAGGCTCCAGCAACTTCAGTGGCTGCACCTGCAGCACCGACCAAAGTTGCCCAAGCAACTGCAACTAGTGCCGAGGACCCAGGTATTGATGATGATCTACAAGCAAGACTTGATAATCTGAGGAAGATGTAAATTGAT_-_ATGTATGGCAGCGGAGGCAGTGGAGGCAGTAGCGATTTCTCTAGTTATGGATCGGATACCAACGTTCCCGATCACCATTTCAAGAACTATGGCACCGACAGTAACGAAGTCAATCAGGATTTCACCAGCTACGGCGACAACTCCAATGTCATACAGAATGACTTCGCGACCTACGGGAAGGACGCCAACGCCATTTCGACTGGCTTCACAAGCTATGCCCAAAGCTCCAATGTTATCACCAACAGTTTCAAAGGCTACAGTGAGAACGGCAACGGCCCCCTTGATCGATTTACTTCATATGCAGACAACGGCAACGTCCCCAGAAATGAGTTTGAAAGCTACGGCGCCAACGGAAATGGGGCCTTGCAAACCTTCACCAATTATGCAGACGGCGCCAATGTACCCCAAGATATTTTCAAGTCCTATGGGAAGGATGCCAATACTCCTCTTGTTACATTCAATAACTACGGGAATTCGTCAAACTCTCAGCAGGATGAATTCAAGCAATACGGAAAGGGTTCCAACAGTCCTCTCATGCAGTTCACCAGCTACGCCAAAAACACCCAATTCACGCAGTATGACAAGAACGGCACAGACGCAACATTCTCATCCTACACTAACTCCACTACTTCCGCCTCCCGCGTGGAAGCGGGGAAGTTCTTCCGAGAGAATCTGCTGGTCCAAGGTTCGAGTCTCCCTTTGCCCAACCTGAAAGATTACATGCCCAGGAGATCATTCCTGCCTCGATCTCTGGCCGACAAGCTTCCCAGCTTCAGCAGCCAAAGCTTGGGAGAGCTGGTACGAATGTTCAGCATTCCAGAGAATTCGAGCATGGAGGGAATGATGGCGAAGACGCTAAAAGAATGTGAACGCCCGGCGGTGAAGGGGGAAATAAAGAAATGTGTGACATCGATAGAAGGAATGGCAGAATTTGCGGTGGGGATATTGGGGGCGAAGGTGGAGGTGCTGACCACAGCGAGCACGGCGGGATCTGGAGAGCGCGTCAAAGTCGGGGAAGTGAAGGGGAAAGATGGAGGGAGAGTGACGAGGTCGGTATCGTGCCATCAGAGTATGTTTCCGTATCTCGTCTATTATTGCCATTCAGTGCCCAAGGTGAAGGTGTATGAGGCTGCACTCATGCGCAACTCCACTTCTAAGGCCCAGAAAATAAACGATGGAGTGGCCATCTGCCATTTGGATACCACGGAGTGGAGTGCAGGGCATGCTGCATTCGTGGCGTTGGGACATAAGCCCGGCCAGATCGAGGTCTGCCACTGGATATTCGAAAACGATCTCATCTGGGTACCTCTACCCTGATGTGATCGTAACCATATTTGCTACCCTGCCATCTTACGAAATAAAGACGATGCACCGCATCTGTAAGCACCGTTCAATAAATAAATTATTTGGTCAAATGATGGCGAAGTAATTTTTTCTACTGTTGAGATGTATTTCTTCATCTTTTGGAATGAATGTCATCATCTCTTCCTTCCCCTTTAACTCGATAGGAATATATGATGCATTACGTGCCTCTTAGAACTAGATTGCAATCACCATAATGAATTGGAGATACGAGTAGTTAACAATCGGCGGACTTACTATTGAATCTCCAGCTCATTCAGTGCCTTGTGTTGAGTGTTATCTCTGATGTGGTATCAGAGTGAGTCGTGATACCAACTGAATTGCTCTGTTGCTTCAGCTGCTGGCTCGGCGGGAAAAAGAGCTGTCCAAGAGGTTGTAAGAGATCCCCAGTGCCGTGAAGGAGCATTCTGCAAGGAGTCCTGTGCTGTGAGAGTGCCGTAATCGAAGCCTCCAACATCTGAATTCAGCTGTGAATGTAAGGGTTTGGCCGACCTGTGGGAGTTGAGATTAAGTTGCAATGCCCTTTCATCTTGTAATGTGTGCGAGACGCTGATTGACCTGTCCCTCACCGCTGAAAGGGCACGAAAATACTGAAAGCTAAACTGTTGCAGACAAAGAGATAGAGATGAAAAGTTTGATTTT

Fln Alignment:

Contig7598___TNVPDHHFKNYGTDSNEVNQDFTSYGDNSNVIQNDFATYGKDANAISTGFTSYAQSSNVITNSFKGYSENGNGPLDRFTSYADNGNVPRNEFESYGANGNGALQTFTNYADGANVPQDIFKSYGKDANTPLVTFNNYGNSSNSQQDEFKQYGKGSNSPLMQFTSYAKNTQFTQYDKNGTDATFSSYTNSTTS-------ASRVEAGKFFRENLLVQGSSLPLPNLKDYMPRRSFLPRSLADKLPSFSSQSLGELVRMFSIPENSSMEGMMAKTLKECERPAVKGEIKKCVTSIEGMAEFAVGILGAKVEVLTTASTAXXXXXXXXXXXXXXXXXXXTRSVSCHQSMFPYLVYYCHSVPKVKVYEAALMRNSTS--------KAQKINDGVAICHLDTTEWSAGHAAFVALGHKPGQIEVCHWIFENDLIWVPL
B8LLB0______________SNVPDHHFKNYGTDSNAGIQNFKSYADNSNVVKNDFASYGKDANGILSGFSSYAENSNVITNNFKGYSEGGNGPLDQFTSYADNGNVPRNEFESYGSNGNGALQSFTSYADGANVPQDVFKSYGKDANTPLVTFTNYGNSSNSQQDEFKQYGKGSNSPDMTFTSYGRNTQFKEYAKNGTGITFSSYTNSTNSNSSAMGTAAGVEAGKFFRENLLVQGSSLPLPNLRDFMPRRSFLPRSLADKLPSFSSQSLAELVRMFRIPENSSMEGMMAKTLKECERPAVKGEIKKCVTSVEGMAEFAVGILGKKVEVLTTASTAGSGERVQVGEVNGKDGGRVTRSVSCHQSMFPYLVYYCHSVPKVKVYEAALLRNSNSNPSSNQKEKIEKINDGVAICHLDTTQWSAGHAAFVALGHKPGQIEVCHWIFENDLIWVPV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2398		80		20	0.995493
2399		80		20	0.995493
2402		80	20		0.995493
2403			20	80	0.995493
2562	71		28		1.0
2734	33		66		1.0
2781		33		66	1.0
2796		40	60		1.0
2820			25	75	0.996473
2914		57	42		1.0
2916	14		85		0.993533
3147	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
997	1011	GAA GAA GAA GAA GAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain