SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7520

Length: 1851 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7520

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SJJ0_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42240.1	scpl42 serine carboxypeptidase-like 42 chr5:16888717-16890931 FORWARD LENGTH=473	64%
RefSeq	Arabidopsis thaliana	NP_199039.1	serine carboxypeptidase-like 42 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002300939.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX75

Fln msg:

Fln protein: MELQLKLQRWLFLIMYVFFGIAVQISGGPAEDLIGRLPGQPKVNFKQYAGYITVDEHAGRALFYYFAEAENDSDSKPIALWLNGGPGCSSLGGGAFTELGPFYPQGNGQGLRKNLQSWNKASNLLFVESPAGVGWSYSNTTADYTCGDGSTAKNMLVFLSRWFKRFPEYASRDLFLTGESYAGHYIPQLASKLLKYNKVAKRYKFNLKGISIGNPLLSLNVDTMASYEFLWSHGLISDESNIAIRKSCNFDKRIKNVDVIDISKECDDILKQVEQEVGDYVNEYDVILDVCPPSLIEQELRLRKKVSHISLGVDVCMTSERSFYFNLPQVQKALHANRTNLPYEWSMCSDVLNYSSYDEGIDILPVLKGIIQEGIRVWIFSGDQDSVVPLMGSRTNVRHLANDLKLSVRVPYRAWYHQGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFKTFLSGKDLPDQQ*

Protein Length: 471

Fln nts: ATGGGGTTTTATTGAATATTTGATGAACATTATCATGTTTTATGAGACTCATAAGGAAAGGAAGAGTATGCTTACTTTTGAATCCCGTGGCGGCTCGATTCGGAAGTATACTCTGAACTAGCTTGCGCGTTTCTTGACTGGACAGTTGGATCCAGGGCTCTTCAACTCACAGAAAAGTATTCGAGCCTTTTGTTGACGTTCTTAGCGGGGAAAGTTGA_-_ATGGAGTTGCAACTAAAATTGCAGCGATGGCTGTTCTTGATTATGTATGTATTCTTTGGCATAGCTGTCCAAATTAGTGGAGGTCCGGCGGAGGATTTAATTGGTAGACTGCCTGGTCAGCCAAAAGTAAATTTCAAACAATATGCTGGATACATCACGGTCGATGAGCACGCTGGCCGCGCATTGTTTTATTATTTTGCTGAAGCAGAGAATGATTCGGACTCAAAGCCCATTGCTTTATGGTTAAATGGAGGTCCGGGCTGTTCTTCACTTGGGGGTGGTGCATTTACGGAGCTAGGCCCGTTTTATCCACAAGGCAATGGCCAAGGACTTCGAAAAAATTTACAATCCTGGAACAAAGCATCAAACCTCCTTTTCGTAGAATCACCTGCTGGAGTTGGTTGGTCGTATTCAAATACCACTGCAGACTACACATGCGGTGATGGATCTACAGCGAAGAATATGCTTGTGTTTCTTTCTAGGTGGTTTAAAAGGTTTCCTGAATATGCATCCAGAGATTTATTCTTAACTGGCGAAAGCTACGCAGGGCATTATATACCACAGTTAGCGAGCAAATTGCTAAAATACAACAAAGTGGCCAAAAGATATAAATTCAACCTTAAGGGAATATCTATTGGCAACCCATTGCTTAGCCTTAATGTCGATACGATGGCGAGTTATGAGTTTTTATGGTCACATGGGCTGATTTCTGATGAGTCTAATATTGCTATCCGGAAAAGTTGCAATTTTGACAAGCGTATCAAAAATGTTGATGTCATTGATATCTCCAAAGAGTGTGATGATATATTAAAACAGGTAGAACAGGAAGTTGGTGACTATGTTAATGAATATGACGTGATACTTGATGTTTGTCCCCCATCACTTATTGAACAGGAGCTTCGATTAAGGAAAAAGGTAAGCCATATAAGCCTAGGAGTTGATGTCTGCATGACCAGCGAGAGAAGTTTTTATTTCAACTTGCCGCAAGTTCAAAAGGCACTCCATGCAAATAGAACGAATTTGCCATACGAATGGAGTATGTGTAGCGATGTCCTGAATTACTCATCATATGACGAAGGCATCGACATTCTTCCTGTCCTTAAGGGCATCATTCAAGAAGGTATCCGTGTTTGGATTTTCAGTGGAGATCAGGACTCTGTTGTGCCATTGATGGGTTCGCGGACTAATGTTCGTCATTTAGCTAATGATTTAAAGCTGTCTGTCAGAGTACCTTATCGTGCTTGGTACCATCAAGGGCAGGTAGCTGGGTGGACAACTGTATATGGAGACTTGCTGACCTTTGCAACAGTGCGAGGGGCATCTCACATGGTTCCGTATTCTCAACCTGCTAGAGCACTGCATTTGTTTAAAACATTCCTATCTGGTAAAGACCTACCAGACCAGCAATGA___AGTTTTGCACAATAAAGCGTCCATGAAATAAAATAAACATCTTAGTTAAAAAATTGACATAGACTGTGCTTATGTACTATTGTTTCATTTTATAAATAAATGAAAAAAATGGCCATACAGAAATAGTGTGGAAATAAGGCTTTTTGGTGATCACATTATGGTAAGCTTAACATTAGTATGTTCAAGGTTCGTTTGGTGGTGTGAATGATTAGAATTGAGTTCC

Fln Alignment:

Contig7520___MELQLKLQRWLFLIMYVFFGIAVQISGGPAEDLIGRLPGQPKVNFKQYAGYITVDEHAGRALFYYFAEAENDSDSKPIALWLNXXXXXXXXXXXAFTELGPFYPQGNGQGLRKNLQSWNKASNLLFVESPAGVGWSYSNTTADYTCGDGSTAKNMLVFLSRWFKRFPEYASRDLFLTGESYAGHYIPQLASKLLKYNKVAKRYKFNLKGISIGNPLLSLNVDTMASYEFLWSHGLISDESNIAIRKSCNFDKRIKNVDVIDISKECDDILKQVEQEVGDYVNEYDVILDVCPPSLIEQELRLRKKVSHISLGVDVCMTSERSFYFNLPQVQKALHANRTNLPYEWSMCSDVLNYSSYDEGIDILPVLKGIIQEGIRVWIFSGDQDSVVPLMGSRTNVRHLANDLKLSVRVPYRAWYHQGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFKTFLSGKDLPDQQ
A9NX75______________MDVQPKLQRWLCLVMYILFGIAVQISGGPAEDLIDRLPGQPKVNFKQYAGYITVDEHAGRALFYYFAEAEDDSDSKPVALWLNGGPGCSSVGGGAFTELGPFYPRDDGHGLRKNLQSWNKVSNLLFVESPAGVGWSYSNTTSDYTCGDESTARNMLVFLSKWFKRFPEYASRDLFLTGESYAGHYIPQLANKLLNYNKVAKRYKFNLKGISIGNPLLSLNVDTAASYEFLWSHGLISDESNIAILKSCKFDKRIKNVDVIDISKECDDILKQVEQEIGDYVNEYDVILDVCPPSLIEQELRLRKKVSHMSLGVDVCMTSERQFYFNLPNVQKALHANRTNLPYDWSMCSNVLNYSGYDEGIDILPVLKDIIQQGIRVWIFSGDQDSVVPLMGSRTNVRNLANDLKMSVKVPYRAWYHEGQVAGWTTVYGDLLTFATVRGASHMVPYSQPARALHLFRTFLSGKDLPDQQ

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
305		25	75		1.0
307		75		25	1.0
544	66		33		1.0
811	87			12	0.992554
812	85			14	0.993533
860	12	87			0.992554
862		87		12	0.992554
1147	20		80		0.995493
1148		80		20	0.995493
1149		80	20		0.995493
1150			20	80	0.995493
1151	80		20		0.995493
1674	50		50		1.0
1678	85	14			0.993533
1680	85			14	0.993533
1681	85			14	0.993533
1686	57	42			1.0
1688	57		42		1.0
1723	85			14	0.993533
1749	75		25		0.996473
1770		75		25	0.996473
1781		25		75	0.996473
1784	25	75			0.996473
1786	25			75	0.996473
1787	25			75	0.996473
1789	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain