SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7457

Length: 1999 nt

UniGene Fasta

>sp_v3.0_unigene7457
TACATGGGGAGGGTTATAGAGCCATAGAGTTCGGAGAAGCATTATTAGGCCTTCTCTGATCAATTTCATAACTTGGCAATCATTTAGAGCAGGCCTTCCTGATGCAAAAAATGAGCATGGCCAAGAAGTTGTTCAAGGACAATATGGTTCATCTAAGCAGAGCCTGCAAATCCCTTAACGATGCTTGGCCAATTTCAATTTTCAAAGCTCGAACAAATAGAGAGCCTCCATCTCCATCTGCTATTAAAGTTTCCGATCATATTGATAATCATCAGTTTGTTTTGTCTGCAAAACGTGGATCAGAAGAAGTATTCGATAATCACATTTCAATCCAAATAAGATTGGCCGATGATTCCAAGGATCTGCAGAAACCAGTGGGCACCAGCTCCTTCCTCCATACAACCATCAACTTACTCGGTATCATGCTAGGGCTTGGACTGCTCTCAACACCGTATGCTTTAGAAGAAGGCGGATGGATGAGCCTTGGGGTATTGTTAACACTATCACTAATATGCTGCTACACTGCATTTGCTCTAGCTCGGTGCCTGGATTGCGATCCCAAGGTGTTAAATTATCAAGACATTGGGAACCAGGCTTTTGGAGTGAAGGGACGAATTATTGTTTCCACATTCCTATACGTTGAGATCATATTCATAGCAATTGGGTACACCATATCTCTGGGGGACAATATTGCTGCAATCTTCGTTGACACAGAGCTGAATTTATCAACATGGTTACACCTTACAACGCCTCGGTTGCTTACCATAATAGCGGTTGTCATCGTTCTACCGACCCTATGGGTTCGAGACTTGAGCTCCATTTCCTTCCTGTCGTGGGGTGGAGTTACCACTTCTCTTCTGCTGATGTTCACACTTACTTGGGCCGGTCTTTTTGGTGGAGTGGAGTTCTCCAGGAATATCCCTCTGATCAACACGCATAGAATACCAGTTTCCACTGGCCTTTATGCCTTCTGTTATGCTGGCCACGTTGTCTTTCCAACAATATACAGATCAATGAAGGAACCATCTCAGTTCGGCAGGGTAATTATTCTGAGCTTTGTAATCGTCACAGCGATATACAGTGGGTTTGCTTGCCTGGGTGGGACAATGTTTGGAAGCTCAGTCAGTGCTCAGATAACTCTGAACATGCCCAGACATTTGTTGGTAACAAAGTTTGCTCTTTGGGCAACTGTAATCACTCCAATGAGCAAATATGCTCTGCAGCTTTCACCTGTGGCAAGAGAGCTGGAGAACTTGGTGGCCTCTGCATGGAAACCCAAGCCCAGAGGGAGAATGGTCACAAGGATATTCATAGTATCCTTCCTCTTATTCAGCATTCTGGCAATGGCCCTTGCTTTGCCTTATTTTGGCTACGTGTTGGCTCTCACAGGATCATTTCTGAGCATCACCATGTCCATCATTCTTCCCTGCATCTTCTACATCAAAATCACTCGCAAAACTATGACTTTACCAATGGTGTTGATGAACGTTGCCTTCATAGTCGTGGGACTTGTTTTGAGTATATGTGGAACCATAGCCTCTGCTAAAAATCTCATCGATAGCATTCACAGCCATGCAAGGACTTGATCAATAACAGAGCCCTAATAGCTCTGAAATTATACTTGTTTTCCAAGACACAACCACCCAACCGCTGCTGCACTTGCGTTCTTCAGTCCTCCTCACATATATATCGAGTCCAACCATATATATATTTATCATATTCTTCCATCCCTTCGCTTCAGAAAATATGGCAACTCGTCATACTAAGAGCTTTCTGGTCTGCAATGGCGAAAAATTATGATCTATGTTTGAATAAGAATTAAAGAGAAATATGTGAATGGCAATTTTCTTATAGATGTTGTCCAGTGCACCAGAAATCGGTGTAGAACAGGACACAGAAATTCCGTGGTGAATGCTGCCTGGCCATTACTTGTAACAGAAATCATGTAATGGAAATAGTAACCTGCAAGAAAATAGGTCACCTCTCGTGCATTTCCTTG

Ace file of the UniGene sp_v3.0_unigene7457

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Amino acid transporter family protein, putative n=3 Tax=Oryza sativa RepID=Q53MQ4_ORYSJ	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Amino acid transporter	-	-	2.403e-09	-

Source	Gene names
Sma3	At5g02170; At5g16740; F28P10.190; F5E19_80; GSVIVT00018153001; GSVIVT00033556001; H0219H12.7; LOC_Os11g19240; OSIGBa0097P08.12; OSJNBa0072F16.7; Os04g0460300; OsI_16168; OsI_35871; OsI_35874; OsJ_13800; OsJ_15055; OsJ_33697; PHYPADRAFT_120356; POPTRDRAFT_

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G16740.1	Transmembrane amino acid transporter family protein chr5:5501044-5502856 REVERSE LENGTH=426	47%
RefSeq	Arabidopsis thaliana	NP_197176.1	Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002321090.1	amino acid transporter, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: your sequence is longer than subject: 495 - 161

Fln protein: MQKMSMAKKLFKDNMVHLSRACKSLNDAWPISIFKARTNREPPSPSAIKVSDHIDNHQFVLSAKRGSEEVFDNHISIQIRLADDSKDLQKPVGTSSFLHTTINLLGIMLGLGLLSTPYALEEGGWMSLGVLLTLSLICCYTAFALARCLDCDPKVLNYQDIGNQAFGVKGRIIVSTFLYVEIIFIAIGYTISLGDNIAAIFVDTELNLSTWLHLTTPRLLTIIAVVIVLPTLWVRDLSSISFLSWGGVTTSLLLMFTLTWAGLFGGVEFSRNIPLINTHRIPVSTGLYAFCYAGHVVFPTIYRSMKEPSQFGRVIILSFVIVTAIYSGFACLGGTMFGSSVSAQITLNMPRHLLVTKFALWATVITPMSKYALQLSPVARELENLVASAWKPKPRGRMVTRIFIVSFLLFSILAMALALPYFGYVLALTGSFLSITMSIILPCIFYIKITRKTMTLPMVLMNVAFIVVGLVLSICGTIASAKNLIDSIHSHART*

Protein Length: 496

Fln nts: TACATGGGGAGGGTTATAGAGCCATAGAGTTCGGAGAAGCATTATTAGGCCTTCTCTGATCAATTTCATAACTTGGCAATCATTTAGAGCAGGCCTTCCTG_-_ATGCAAAAAATGAGCATGGCCAAGAAGTTGTTCAAGGACAATATGGTTCATCTAAGCAGAGCCTGCAAATCCCTTAACGATGCTTGGCCAATTTCAATTTTCAAAGCTCGAACAAATAGAGAGCCTCCATCTCCATCTGCTATTAAAGTTTCCGATCATATTGATAATCATCAGTTTGTTTTGTCTGCAAAACGTGGATCAGAAGAAGTATTCGATAATCACATTTCAATCCAAATAAGATTGGCCGATGATTCCAAGGATCTGCAGAAACCAGTGGGCACCAGCTCCTTCCTCCATACAACCATCAACTTACTCGGTATCATGCTAGGGCTTGGACTGCTCTCAACACCGTATGCTTTAGAAGAAGGCGGATGGATGAGCCTTGGGGTATTGTTAACACTATCACTAATATGCTGCTACACTGCATTTGCTCTAGCTCGGTGCCTGGATTGCGATCCCAAGGTGTTAAATTATCAAGACATTGGGAACCAGGCTTTTGGAGTGAAGGGACGAATTATTGTTTCCACATTCCTATACGTTGAGATCATATTCATAGCAATTGGGTACACCATATCTCTGGGGGACAATATTGCTGCAATCTTCGTTGACACAGAGCTGAATTTATCAACATGGTTACACCTTACAACGCCTCGGTTGCTTACCATAATAGCGGTTGTCATCGTTCTACCGACCCTATGGGTTCGAGACTTGAGCTCCATTTCCTTCCTGTCGTGGGGTGGAGTTACCACTTCTCTTCTGCTGATGTTCACACTTACTTGGGCCGGTCTTTTTGGTGGAGTGGAGTTCTCCAGGAATATCCCTCTGATCAACACGCATAGAATACCAGTTTCCACTGGCCTTTATGCCTTCTGTTATGCTGGCCACGTTGTCTTTCCAACAATATACAGATCAATGAAGGAACCATCTCAGTTCGGCAGGGTAATTATTCTGAGCTTTGTAATCGTCACAGCGATATACAGTGGGTTTGCTTGCCTGGGTGGGACAATGTTTGGAAGCTCAGTCAGTGCTCAGATAACTCTGAACATGCCCAGACATTTGTTGGTAACAAAGTTTGCTCTTTGGGCAACTGTAATCACTCCAATGAGCAAATATGCTCTGCAGCTTTCACCTGTGGCAAGAGAGCTGGAGAACTTGGTGGCCTCTGCATGGAAACCCAAGCCCAGAGGGAGAATGGTCACAAGGATATTCATAGTATCCTTCCTCTTATTCAGCATTCTGGCAATGGCCCTTGCTTTGCCTTATTTTGGCTACGTGTTGGCTCTCACAGGATCATTTCTGAGCATCACCATGTCCATCATTCTTCCCTGCATCTTCTACATCAAAATCACTCGCAAAACTATGACTTTACCAATGGTGTTGATGAACGTTGCCTTCATAGTCGTGGGACTTGTTTTGAGTATATGTGGAACCATAGCCTCTGCTAAAAATCTCATCGATAGCATTCACAGCCATGCAAGGACTTGA___TCAATAACAGAGCCCTAATAGCTCTGAAATTATACTTGTTTTCCAAGACACAACCACCCAACCGCTGCTGCACTTGCGTTCTTCAGTCCTCCTCACATATATATCGAGTCCAACCATATATATATTTATCATATTCTTCCATCCCTTCGCTTCAGAAAATATGGCAACTCGTCATACTAAGAGCTTTCTGGTCTGCAATGGCGAAAAATTATGATCTATGTTTGAATAAGAATTAAAGAGAAATATGTGAATGGCAATTTTCTTATAGATGTTGTCCAGTGCACCAGAAATCGGTGTAGAACAGGACACAGAAATTCCGTGGTGAATGCTGCCTGGCCATTACTTGTAACAGAAATCATGTAATGGAAATAGTAACCTGCAAGAAAATAGGTCACCTCTCGTGCATTTCCTTG

Fln Alignment:

Contig7457___IYSGFACLGGTMFGSSVSAQITLNMPRHLLVTKFALWATVITPMSKYALQLSPVARELENLVASAWKPKPRGRMVTRIFIVSFLLFSILAMALALPYFGYVLALTGSFLSITMSIILPCIFYIKITRKTMTLPMVLMNVAFIVVGLVLSICGTIASAKNLIDSI
D5A864______________IYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSS----DSWLVLWGIGIRTLLVISTVAVALALPFFGYLMALIGSSLSCSVSIIIPSICYLKLFGASISRHEMSLIFIILILGIVTGIVGTYSSLQKIADAI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
297	12		87		0.992554
303		12	87		0.992554
663	10		90		0.90298
833	90		10		0.90298
904	88		11		0.923564
1454	10	90			0.90298
1460	10			90	0.90298
1516		13		86	0.999973
1677		90		10	0.90298
1735	42		57		1.0
1943			22	77	0.999999
1980		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain