SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7360

Length: 1690 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7360

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RX49_RICCO	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Catalytic, putative	-	-	5.166e-08	-

Source	Gene names
Sma3	AT5G64460; At1g09932; At1g09935; At1g58280; At2g17280; At5g64460; CHLREDRAFT_192686; F19C14.10; GSVIVT00005748001; GSVIVT00015052001; OSIGBa0123D13.3; OSJNBa0068L06.8; Os04g0102500; OsI_14503; OsJ_13496; PGM; PHYPADRAFT_131781; PHYPADRAFT_135796; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64460.2	Phosphoglycerate mutase family protein chr5:25773009-25775104 REVERSE LENGTH=282	61%
RefSeq	Arabidopsis thaliana	NP_001190613.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002301106.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABX9

Fln msg:

Fln protein: MDGFVGSSLYPLHRCKTLHVVRHAQGFHNLAGLTDEKALFSYEYFDASLTPLGWKQVENLRKHVTETGIFSKIQLVVASPLLRTMQTAVGVFGGGDYIDHVASPPLMVAGSGTNSHASISSSGCPPFMAVELCREHWGVLPCDKRRSISEYRSIFPAIDFSLTETDEDTSWQPDVREKEEEIAARGRAFINWLWTRKENEIAIVSHGGFLRHTLALFGNDCHPSIRDAIHKDFTNCELRSMVIADRSAIGTDSPTTDYPGGIPRGPDIPSDYEDLEIMENEKR*

Protein Length: 285

Fln nts: ATGGGGATTGGGGAGTGGCCTTAAATGCATCACGGATACCATAGCACTAAGAATCCTCTCTCAACCAGGGCTTCATTGACATGTGGCAAGGGCAGAATCTTTGATCATCGGATATCATCAGTTTGACGCGTAACAAAAAGCACCAATTACCTTCTGGCCCAATGTAAATTCTTCTGGTCAAATTTGACGTTCGCCCAGTTAAATTCTCAACGGAATTCCCAAATCGGGCATCGGATTTTTTCTGAAAAGGCTGACACCCAAGTAGCGTTGATCCACTCAATGCAAAGTAATTACATTCCCCATAAGGGCGGAATAAAGGAGTCGAAGAATCATATGTCATGGAGAATGTTCACCCAGCATTTTTCAAAGTCAGATTCTTAGCGCTAAGATAAACAGTACCCACGAACGATTTCGTCCATCAATCTGATCTGGTTCTGCTTCTGTCGTTTACGCTCAGTGTTCTGCTCTCGAAGAT_-_ATGGATGGATTCGTAGGCTCAAGTTTATATCCTCTGCACAGATGCAAAACTTTGCACGTGGTGAGGCATGCACAAGGGTTCCATAATCTAGCAGGATTAACAGACGAAAAGGCACTCTTTTCCTATGAATATTTTGATGCTAGCCTTACTCCTTTAGGTTGGAAGCAGGTTGAAAATCTACGCAAGCATGTCACAGAAACTGGAATTTTTTCTAAGATTCAGTTGGTTGTGGCCTCACCTTTATTGAGGACTATGCAGACAGCAGTAGGGGTTTTTGGTGGTGGAGACTATATTGACCATGTGGCATCTCCTCCCTTAATGGTGGCTGGTTCTGGTACTAATAGCCATGCTTCAATTTCAAGCTCTGGTTGCCCACCTTTTATGGCTGTGGAGCTATGCCGGGAACACTGGGGAGTACTTCCTTGTGACAAGAGGAGAAGTATCAGTGAATATCGATCAATTTTCCCTGCCATTGATTTTTCTCTGACAGAAACAGACGAAGACACTTCATGGCAGCCAGATGTTAGAGAAAAGGAAGAGGAAATTGCAGCTCGTGGAAGAGCCTTTATTAACTGGTTGTGGACACGAAAGGAAAATGAAATAGCAATTGTTTCTCATGGTGGCTTTTTGCGGCACACATTGGCTCTATTTGGGAATGACTGTCACCCCTCTATTAGAGATGCGATCCACAAAGACTTTACGAACTGTGAACTTAGATCGATGGTTATTGCAGACAGAAGTGCAATTGGGACGGATTCACCCACAACAGACTATCCAGGAGGAATCCCTCGCGGTCCTGACATCCCTAGTGATTATGAAGATTTGGAGATAATGGAGAATGAAAAACGTTAG___TTACACTTTAAGACATAGAAATGTGGATTGGTAAATGTTTGCTCTGATTTCATTGGATGTCTTAGACATCAAACCAGAAACCTGGCTTATTTATCACGACTTAACTGAAGGTTGCCAATTCAGTAATTCTGAAACCTTTTTTATGAGTGGTCTGGCACATATCTTGATGCCTCTCCCATTATCGTTTTCTGAATTGACTTCTCAGGGTCATGTTACAAGTTTTCGGATATACCACATGAATAGTGCCTCTAAAATGACATTAAATACCATCAAGAATGACAGACTTCCAGCAAACCCATGTTTATTCCATATATTTGATTTAATTTGAGCAATCTTGATCACTGATCATTTATATTGGGTGTC

Fln Alignment:

Contig7360___SSLYPLHRCKTLHVVRHAQGFHNLAGLTDEKALFSYEYFDASLTPLGWKQVENLRKHVTETGIFSKIQLVVASPLLRTMQTAVGVFGGGDYIDHVASPPLMVAGSGTNSHASISSSGCPPFMAVELCREHWGVLPCDKRRSISEYRSIFPAIDFSLTETDEDTSWQPDVREKEEEIAARGRAFINWLWTRKENEIAIVSHGGFLRHTLALFGNDCHPSIRDAIHKDFTNCELRSMVIADRSAIGTDSPTTDYPGGIPRGPDIPSDYEDLEIMENEKR
D5ABX9______________SGLYPLHHCKILHMVRHGQGYHNVAGEKDFGAYMSYEYVDASLTPLGWQQVDNLRNHIWKTGFASRIELVVTSPLMRTMQTAVGVFGGGGYIDGDACPPLMVEGAGSSNHAAITSANCPPFIAIEWCREHLGVHPCDKRKSISEYQPLFPGIDFSLVEKNEDVLWKSDVREKEEEVAARGRTFLNWLLTRKEKEIAVVSHSGFLIHTLGLFGKDCHPLVRKEIHTEYANCELRSLVIADRSAIGTNLPTTDFPRGTPPGPDVPSDYDDVKNLEAEDK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
139	85			14	0.993533
140	85		14		0.993533
141	85		14		0.993533
143		85	14		0.993533
145		85		14	0.993533
251			87	12	0.992554
253		87	12		0.992554
254			12	87	0.992554
270	11			88	0.923564
273	88		11		0.923564
274			11	88	0.923564
275		88	11		0.923564
320			90	10	0.90298
324			10	90	0.90298
325		90	10		0.90298
483	90			10	0.90298
495		10	90		0.90298
688		11		88	0.923564
693	88		11		0.923564
1496	11		88		0.923564
1500	11	77		11	0.968132
1502	11			88	0.923564
1503		88		11	0.923564
1681	14			85	0.993533
1682	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain