SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7275

Length: 2428 nt

UniGene Fasta

>sp_v3.0_unigene7275
ATGGGGGAGTGCAGGCGTTATAATATTGAGGAAGGGAAACATGTTTCTTGGCTCTCCCTCCATCATCGCGCCTAATTTGCTTCACAGAATGACAACAATCCATTTCCAGCTCCCGCCCCCATTTCTGCTATCAGTTACACCTCTGCAATTTCTTCTGCTTCTAGCAGCTTTATTTAACTTCTGCGCTTCCAACCAGCAGCAACCTAATTGCCGCAACGTTTCTCCTTGTGGCAACTTCACCATATCGTATCCCTTCGGCAGAGCAAAATCAGGATGCGGCCACCCTGAGTTTCAAATCTACTGTCAATCCAGCACGCCCTATCTCACAATCAACAACGTGAGCTACAGGGTTTTGGGATACAATCAAAACAGTATGAGTATGAAAATCGCCAGTGGCACAGTTTTTACAGACTGTGGCCTTCCGGAAGCTCCTGTTAATCTCACTGCCTCTCTGTTTAAACTTGCTGCTTCGTCCTACCAGAGTATAACCCTGGGAATAGGATGCCCGGCAATAGGAAATTTGCCTGTGCTCAATGTCCCTTGTGGTAATGATAATGGTATATGGGCATTTCCTTCAGATCTGCCAGGAACCAAGTGGGTTCCCTGCATCTCAACTGTTCGATTCCCTGTCCTGCAACAATTATCTTCTTTAACTTTGCAGAAATTGTGGGACGTTCTGCGTGGGGGTTTTGAAATCGAATGGAATAAAACTGATGAACCATTAAAAATGTGCAGCCACTGTATGTCAAGAGCAGGAATCTGTGGATACAATGTTTCTAATTCCAGCGAGCCTTTCCTCTGCTACCTTCCTCAAAGCCCAGGTTCGCCACAGAACGCCAGCCAACCGCAAAGCCCGGCTTCGGCACAGAATACCACGCAACCTGGTGATTCACATACTCAAACTGATACAATAAGTCCCAACAATGGTCTTTCCCATCCGAAACCTAGAGGAAAATCTTACAGGGGGATTCTCACAGGTGTCTGTGTTGGATTTGCTTTACTGATGACCTCTGTAGCAGTGCTAGTAGCGCGTATGCGTAAAAGGGATCGTCGGACCAAACAAAGACTTGAGAGCGCTGAGTATTGCAAGAACAAGGAACTGGGCGCTCTGTGTATGAATGATTCTTCTCTGCCATTTTTCTGTTACGAAGAGCTTGAAGAAGCCACCGGCTTCTTCGATGAGAAGAAAGAATTAGGAGACGGGGCGTTTGGCTCTGTTTATCTGGGAAATCTCTGGGATGGGCGTCTCGTGGCGGTGAAAAGGCTCTATCACGATAACTCTAGAAGACTTGAACAGTTTGGTAACGAAGTCAGGATACTGTCCTCGCTCAAACATCCCAACCTTATTCTTCTAATTGGGTACTGCCAGGATCGCAGAGAATTGCTTCTGGTTTATGAGTATGTGCCAAATGGTACCTTGGCCGATCATCTTCATGGGGAAAATAGAGGAAAGGGTTTATCCTGGGAAACGAGGCTAAATATAGCAGTAGAAACGGCCCAGGCCTTGGCATATCTTCATTTCTGCGTTAAACCGCCCATATTCCACAGAGATGTGAAATCGACCAACATTCTTCTGGACGAGAATTTCAGGGCTAAAGTGGCCGATTTTGGGCTTTCTAGGCTTGTTCCCGCAGAAGCCTCTCATGTTTCCACAGGTCCCCAAGGAACCCCTGGCTACCTTGATCCAGATTACCAGCAGTGCTATCGGCTCAGCGACAAGAGCGATGTTTACAGCTTCGGTGTAGTTCTGGTAGAGCTAATATCTGCTCAAAAAGCCGTGGACATAACAAGGGAGAAACGAGATATTGGGCTTGCGAATTTAGCTGTGTCCAAGATTCAATGTGGGGCTTTACAGGAACTGGTGGATCCGAACCTGAAGATTGATTCTAACCCTGATGTCAAGGCCATGGTTACTGGTGTTGCTGAATTGGCTTTCAGATGCCTTGCTAATGAGAAGGATGATCGGCCTAATATGATGGAAGTCGCTGCACAGCTCCAGCTTCTCAAACAAGTTGAACATGGCTGTCCAGGTAATCAGCGCAGCTCCACAGATTTCGTTCATTAGACACACAATAATCAAAAGCCCAAGAAATTATTACTGACACTCACAAGGATTCACCAACTTATGGTCTATATGAGGCTGGTCAAGCCCAGGCAGGCACTATATTAGGTATAAGCAGTGTGGGTCACAATGGATTTGGGTGAGTTCTATTCTGAAACTTAGCTAATGAGGAATTGGTTATTATAATCACAGGACTCGAATTTTATTTCAGTTAAGTCTTTAGCTTTTCCACATGTTCAAATTGGTCATTTGGTGTTAAAACCAGAAGGTGTGGTCAGCTTAAAAATGTAGATATATTTCAAAATTTGTATTTATTTCAAGAAGCTTATTGATTTATATGTAAATTGTGGATATATATTGCTGTAT

Ace file of the UniGene sp_v3.0_unigene7275

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase; 23181-21271 [Arabidopsis thaliana]	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Wall-associated kinase, putative	-	-	3.065e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	4.019e-07	-
Sma3	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	1.137e-06	-

Source	Gene names
Sma3	AT1G67720; AT2G28960; AT4G20450; AT4g20450; At1g16130; At1g18390; At1g25390; At2g23450; At5g02070; At5g66790; B1148D12.10; B1215B07.12; B1250G12.24; B1250G12.30; B1340F09.9; F15H18.11; F15H18.25; F26B6.10; F2J7.14; F9F13.100; GSVIVT00000553001; GSVIVT0000

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Wall-associated kinase	IPR013695	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002332861.1	predicted protein, partial [Populus trichocarpa]	0.0	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ93

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 675 - 350

Fln protein: MFLGSPSIIAPNLLHRMTTIHFQLPPPFLLSVTPLQFLLLLAALFNFCASNQQQPNCRNVSPCGNFTISYPFGRAKSGCGHPEFQIYCQSSTPYLTINNVSYRVLGYNQNSMSMKIASGTVFTDCGLPEAPVNLTASLFKLAASSYQSITLGIGCPAIGNLPVLNVPCGNDNGIWAFPSDLPGTKWVPCISTVRFPVLQQLSSLTLQKLWDVLRGGFEIEWNKTDEPLKMCSHCMSRAGICGYNVSNSSEPFLCYLPQSPGSPQNASQPQSPASAQNTTQPGDSHTQTDTISPNNGLSHPKPRGKSYRGILTGVCVGFALLMTSVAVLVARMRKRDRRTKQRLESAEYCKNKELGALCMNDSSLPFFCYEELEEATGFFDEKKELGDGAFGSVYLGNLWDGRLVAVKRLYHDNSRRLEQFGNEVRILSSLKHPNLILLIGYCQDRRELLLVYEYVPNGTLADHLHGENRGKGLSWETRLNIAVETAQALAYLHFCVKPPIFHRDVKSTNILLDENFRAKVADFGLSRLVPAEASHVSTGPQGTPGYLDPDYQQCYRLSDKSDVYSFGVVLVELISAQKAVDITREKRDIGLANLAVSKIQCGALQELVDPNLKIDSNPDVKAMVTGVAELAFRCLANEKDDRPNMMEVAAQLQLLKQVEHGCPGNQRSSTDFVH*

Protein Length: 676

Fln nts: ATGGGGGAGTGCAGGCGTTATAATATTGAGGAAGGGAAAC_-_ATGTTTCTTGGCTCTCCCTCCATCATCGCGCCTAATTTGCTTCACAGAATGACAACAATCCATTTCCAGCTCCCGCCCCCATTTCTGCTATCAGTTACACCTCTGCAATTTCTTCTGCTTCTAGCAGCTTTATTTAACTTCTGCGCTTCCAACCAGCAGCAACCTAATTGCCGCAACGTTTCTCCTTGTGGCAACTTCACCATATCGTATCCCTTCGGCAGAGCAAAATCAGGATGCGGCCACCCTGAGTTTCAAATCTACTGTCAATCCAGCACGCCCTATCTCACAATCAACAACGTGAGCTACAGGGTTTTGGGATACAATCAAAACAGTATGAGTATGAAAATCGCCAGTGGCACAGTTTTTACAGACTGTGGCCTTCCGGAAGCTCCTGTTAATCTCACTGCCTCTCTGTTTAAACTTGCTGCTTCGTCCTACCAGAGTATAACCCTGGGAATAGGATGCCCGGCAATAGGAAATTTGCCTGTGCTCAATGTCCCTTGTGGTAATGATAATGGTATATGGGCATTTCCTTCAGATCTGCCAGGAACCAAGTGGGTTCCCTGCATCTCAACTGTTCGATTCCCTGTCCTGCAACAATTATCTTCTTTAACTTTGCAGAAATTGTGGGACGTTCTGCGTGGGGGTTTTGAAATCGAATGGAATAAAACTGATGAACCATTAAAAATGTGCAGCCACTGTATGTCAAGAGCAGGAATCTGTGGATACAATGTTTCTAATTCCAGCGAGCCTTTCCTCTGCTACCTTCCTCAAAGCCCAGGTTCGCCACAGAACGCCAGCCAACCGCAAAGCCCGGCTTCGGCACAGAATACCACGCAACCTGGTGATTCACATACTCAAACTGATACAATAAGTCCCAACAATGGTCTTTCCCATCCGAAACCTAGAGGAAAATCTTACAGGGGGATTCTCACAGGTGTCTGTGTTGGATTTGCTTTACTGATGACCTCTGTAGCAGTGCTAGTAGCGCGTATGCGTAAAAGGGATCGTCGGACCAAACAAAGACTTGAGAGCGCTGAGTATTGCAAGAACAAGGAACTGGGCGCTCTGTGTATGAATGATTCTTCTCTGCCATTTTTCTGTTACGAAGAGCTTGAAGAAGCCACCGGCTTCTTCGATGAGAAGAAAGAATTAGGAGACGGGGCGTTTGGCTCTGTTTATCTGGGAAATCTCTGGGATGGGCGTCTCGTGGCGGTGAAAAGGCTCTATCACGATAACTCTAGAAGACTTGAACAGTTTGGTAACGAAGTCAGGATACTGTCCTCGCTCAAACATCCCAACCTTATTCTTCTAATTGGGTACTGCCAGGATCGCAGAGAATTGCTTCTGGTTTATGAGTATGTGCCAAATGGTACCTTGGCCGATCATCTTCATGGGGAAAATAGAGGAAAGGGTTTATCCTGGGAAACGAGGCTAAATATAGCAGTAGAAACGGCCCAGGCCTTGGCATATCTTCATTTCTGCGTTAAACCGCCCATATTCCACAGAGATGTGAAATCGACCAACATTCTTCTGGACGAGAATTTCAGGGCTAAAGTGGCCGATTTTGGGCTTTCTAGGCTTGTTCCCGCAGAAGCCTCTCATGTTTCCACAGGTCCCCAAGGAACCCCTGGCTACCTTGATCCAGATTACCAGCAGTGCTATCGGCTCAGCGACAAGAGCGATGTTTACAGCTTCGGTGTAGTTCTGGTAGAGCTAATATCTGCTCAAAAAGCCGTGGACATAACAAGGGAGAAACGAGATATTGGGCTTGCGAATTTAGCTGTGTCCAAGATTCAATGTGGGGCTTTACAGGAACTGGTGGATCCGAACCTGAAGATTGATTCTAACCCTGATGTCAAGGCCATGGTTACTGGTGTTGCTGAATTGGCTTTCAGATGCCTTGCTAATGAGAAGGATGATCGGCCTAATATGATGGAAGTCGCTGCACAGCTCCAGCTTCTCAAACAAGTTGAACATGGCTGTCCAGGTAATCAGCGCAGCTCCACAGATTTCGTTCATTAGACACACAATAATCAAAAGCCCAAGAAATTATTACTGACACTCACAAGGATTCACCAACTTATGGTCTATATGAGGCTGGTCAAGCCCAGGCAGGCACTATATTAGGTATAAGCAGTGTGGGTCACAATGGATTTGGGTGAGTTCTATTCTGAAACTTAGCTAATGAGGAATTGGTTATTATAATCACAGGACTCGAATTTTATTTCAGTTAAGTCTTTAGCTTTTCCACATGTTCAAATTGGTCATTTGGTGTTAAAACCAGAAGGTGTGGTCAGCTTAAAAATGTAGATATATTTCAAAATTTGTATTTATTTCAAGAAGCTTATTGATTTATATGTAAATTGTGGATATATATTGCTGTAT

Fln Alignment:

Contig7275___AEYCKNKELGALC------MNDSSLPFFCYEELEEATGFFDEKKELGDGAFGSVYLGNLWDGRLVAVKRLYHDNSRRLEQFGNEVRILSSLKHPNLILLIGYCQDRRELLLVYEYVPNGTLADHLHGENRGKGL-SWETRLNIAVETAQALAYLHFCVKPPIFHRDVKSTNILLDENFRAKVADFGLSRLVPAEASHVSTGPQGTPGYLDPDYQQCYRLSDKSDVYSFGVVLVELISAQKAVDITREKRDIGLANLAVSKIQCGALQELVDPNLKIDSNPDVKAMVTGVAELAFRCLANEKDDRPNMMEV
B8LQ93______________AKFCR----GGVCNRKAVEKKGSTWRVFSLKELHSATNNFNYDNKLGEGAFGSVYWGQLWDGSQIAVKRLKVWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCSEGQERLIVYDYMPNLSILSHLHGQHAAECLLDWSRRMNIAIGSAEGLAYLHHHATPHIIHRDIKASNVLLDSDFKAQVADFGFAKLIPEGETHVTTGVKGTVGYLAPEYAMWRKASENCDVYSFGILLLELVSGKKPVDKMDSNTKHTIVDWALPLVLEGKYDQLADPKFHGKYNEE---ELKRVVHVAIMCAQNAPEKRPTMLEV

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
292		25		75	0.996473
499		25		75	0.996473
548	25		75		0.996473
728	33	66			0.997452
819	83		16		0.994512
821		83	16		0.994512
881	33		66		1.0
1061		66		33	0.997452
1062		66	33		0.997452
1063	66		33		0.997452
1064	66		33		0.997452
1097	66			33	0.997452
1098		66	33		0.997452
1099	66		33		0.997452
1100	66		33		0.997452
1335		80	20		0.995493
1439	83		16		0.994512
1547			12	87	0.992554
1548		87	12		0.992554
1600	85	14			0.993533
1604		14		85	0.993533
1606	14		85		0.993533
1608	14	85			0.993533
1611			14	85	0.993533
1612	14			85	0.993533
1613			14	85	0.993533
1614		14		85	0.993533
1616	14		85		0.993533
1617			85	14	0.993533
1618		85	14		0.993533
1622	14	85			0.993533
1623		14		85	0.993533
1740	14	85			0.993533
1742			14	85	0.993533
1743		85	14		0.993533
1827	88	11			0.923564
1832	11			88	0.923564
1833	12		87		0.992554
2017	23		76		1.0
2022	76			23	1.0
2111		21		78	1.0
2207			80	13	0.999961
2279		10		90	0.90298
2313		12		87	0.992554
2318			14	85	0.993533
2336			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain