SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7235

Length: 1990 nt

UniGene Fasta

>sp_v3.0_unigene7235
CACATTTATATACAGGAAACTATGGATTAGAGATGCGCTGGTTTGTATTGGCCGAGGAGTGACAGGATGGAAATACTGAGCTCCAGCCGAAGGGGTTATGCAGGGGAGGACTCTCCTGCCTCCGCCATTGGCAGCGGAAGTGCGTCGAAATACAAATCTAGGCTCGATAACAGATTCAGCAAGCTTTCATTCTACCAGTCGGCTCCTCCCCTCGAAGTATCCCTCGAAGATTTTGAATTATTTGCCGTGGATCGTCTCAGAGTTCTTAAGGGTCTCGAAGATGCGTTGTCACGTGGCAAAAAATCGGAAGAACTGGAAAGCTTGGTGAGCGAGTTGTGGAGAAAGCACATGCGGACTCCAAATGCAGCTGACATGATGAATAAAGATATTATATCCCATTTTGTGTTGCGCTTGGTATACTGCAGAACGGAAGAGCTTCGGAGATGGTTCCTGCAGATGGAGACTACTCTTTTCCGTCATCGTTTTCGTCTGGAACCCCCAGATGCCCAGAGGATGTTCATGGAGGAATGTAAGCTTCCCTACAGAGCAATTACAAATCCAGAGTTTGAGACGGTGAAAGACAAGTTGGGTCAAGTTGCACGCTCACTTAACCAACCTCTTCCTAATGCGGATAGCATCTTTTATAAGGTTCCCTTTGAGGAAGTTCCTGAGCTTGTTTCTGGTCGTCGAGTATTCTTGCAAAATGGTTATGCATTTGTTCCCATGAACCAGCTTGCAGCAATTGTGGTTGGTCAGTTCAGAAGCCGTTTATCAAAAGCACTTGTTCTAACAAACAGAAAATGGACTTCGACGATTGCTGAAAAAGAGAAAGACCGGTTGACACCTATTGTTGAGACATTGGGTACGTGGTATTTGGGACCTGACTACTCAAAGCCAAACGATAATACTGAGATTTCACTGAAGGACATAGACAACTTGGCAAACAGCTCCTTTCCTCTTTGTATGCGCCACTTGTTTTTCAAGCTCAAAGAGGACCACCACCTGAAGCATGGGGGAAGAATGCAGTTAGGACTCTTTCTGAAGGGTGTTGGGCTGAAATTGGAGGATGCTCTAGCATTTTGGAGAGCAGAGTTTTCTCAAAAGGTGGGTGTGGAGAGATTTGATAAGGAATATGCTTATGGTATACGCCACAATTATGGGAAGGAAGGGAAGAGAACGGATTATAGTCCTTATTCTTGTCAAAAAGTAATTATGTCAACACCTGGTGTAGGAGATCACCATGGTTGCCCTTACCGACATTTCAGTGAGGAGAACTTGCGGGCTGCTCTTGGAAAAATGGGAGTTAATGGTATTACTGTTGATGAAGTGTTGCGTAAAACTCGTGAACATCACTACCAGCTGGCGTGCACATTGACCTTTGAAGCTCTTCATGCATGTTCATGTGACACAGGGATCAACCATCCAAATCAGTATTTTAGTGAGAGCCAAAAAGTCTTACAAGCGAAGAATCCAGTGTTTGAATCCGGGGAATCTCCTGTAACTCCAGTGAAGTCCAAAAGAAGTTGATAAAGGATTGTTCTCTCCTAGATTCCAGAGCAGGAAAGTACTTTGGGGATTGTATTGGTCTTGCTAAATATTGTTTGTTTTCAGAAAATAACCTTAAGTCAACAAGATTATCACTCTTGCAAAAGGGTGATTTGTATGTGATAAGCTGAAAATTTATAAGCTGAGCAAAATTGTAATTCGGGAGAACAAGAATCCAATGAACTGCAATGTTCATCTGAGCTTTATGTGTAATAGAGTTGCCATAGTAGCTTCCATGCATGAAAATAGCGGAAACGCTTTTATCGTTAAATGCCCAAGCAATATGGCACTTTCAAGGCTGTTTATTTAAGATGTGTTGTTGGCAGATCATTGGTTAGTATGGATAGCATGCTGCGAGTATACATAATTCTGCATCATATTTCAAGTATGCTTTCCACAGTTACTTTTTATGTAAGCCGTAATATATTTCAAGTACGCTTTCCAT

Ace file of the UniGene sp_v3.0_unigene7235

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA primase large subunit [Arabidopsis thaliana] sp\|Q84WJ2.2\|PRI2_ARATH RecName: Full=Probable DNA primase large subunit gb\|AAM61309.1\| unknown [Arabidopsis thaliana] gb\|AEE34629.1\| DNA primase large subunit [Arabidopsis thaliana]	-	-	0.0	63%
FL-Next	sp=Probable DNA primase large subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%

Source	Gene names
Sma3	At1g67320; CHLREDRAFT_122684; F1N21_14; GSVIVT00020497001; MICPUCDRAFT_44706; MICPUN_98146; OJ1723_B06.102-1; OJ1723_B06.102-2; Os07g0406800; OsI_25713; OsJ_23920; P0613B07.147-1; P0613B07.147-2; PHYPADRAFT_227680; POPTRDRAFT_577410; POPTRDRAFT_712440; RC

Source	GOs	Term	Type	Identity
Sma3	alpha DNA polymerase:primase complex	GO:0005658	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA primase activity	GO:0003896	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	DNA replication, synthesis of RNA primer	GO:0006269	Biological Process	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA primase, large subunit, eukaryotic/archaeal	IPR007238	-	0.0	-
Sma3	DNA primase, large subunit, eukaryotic	IPR016558	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67320.3	DNA primase, large subunit family chr1:25205520-25208966 REVERSE LENGTH=490	62%
RefSeq	Arabidopsis thaliana	NP_001185340.1	DNA primase large subunit [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002303780.1	predicted protein, partial [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q84WJ2

Fln msg: your sequence is longer than subject: 487 - 454

Fln protein: MEILSSSRRGYAGEDSPASAIGSGSASKYKSRLDNRFSKLSFYQSAPPLEVSLEDFELFAVDRLRVLKGLEDALSRGKKSEELESLVSELWRKHMRTPNAADMMNKDIISHFVLRLVYCRTEELRRWFLQMETTLFRHRFRLEPPDAQRMFMEECKLPYRAITNPEFETVKDKLGQVARSLNQPLPNADSIFYKVPFEEVPELVSGRRVFLQNGYAFVPMNQLAAIVVGQFRSRLSKALVLTNRKWTSTIAEKEKDRLTPIVETLGTWYLGPDYSKPNDNTEISLKDIDNLANSSFPLCMRHLFFKLKEDHHLKHGGRMQLGLFLKGVGLKLEDALAFWRAEFSQKVGVERFDKEYAYGIRHNYGKEGKRTDYSPYSCQKVIMSTPGVGDHHGCPYRHFSEENLRAALGKMGVNGITVDEVLRKTREHHYQLACTLTFEALHACSCDTGINHPNQYFSESQKVLQAKNPVFESGESPVTPVKSKRS*

Protein Length: 488

Fln nts: CACATTTATATACAGGAAACTATGGATTAGAGATGCGCTGGTTTGTATTGGCCGAGGAGTGACAGG_-_ATGGAAATACTGAGCTCCAGCCGAAGGGGTTATGCAGGGGAGGACTCTCCTGCCTCCGCCATTGGCAGCGGAAGTGCGTCGAAATACAAATCTAGGCTCGATAACAGATTCAGCAAGCTTTCATTCTACCAGTCGGCTCCTCCCCTCGAAGTATCCCTCGAAGATTTTGAATTATTTGCCGTGGATCGTCTCAGAGTTCTTAAGGGTCTCGAAGATGCGTTGTCACGTGGCAAAAAATCGGAAGAACTGGAAAGCTTGGTGAGCGAGTTGTGGAGAAAGCACATGCGGACTCCAAATGCAGCTGACATGATGAATAAAGATATTATATCCCATTTTGTGTTGCGCTTGGTATACTGCAGAACGGAAGAGCTTCGGAGATGGTTCCTGCAGATGGAGACTACTCTTTTCCGTCATCGTTTTCGTCTGGAACCCCCAGATGCCCAGAGGATGTTCATGGAGGAATGTAAGCTTCCCTACAGAGCAATTACAAATCCAGAGTTTGAGACGGTGAAAGACAAGTTGGGTCAAGTTGCACGCTCACTTAACCAACCTCTTCCTAATGCGGATAGCATCTTTTATAAGGTTCCCTTTGAGGAAGTTCCTGAGCTTGTTTCTGGTCGTCGAGTATTCTTGCAAAATGGTTATGCATTTGTTCCCATGAACCAGCTTGCAGCAATTGTGGTTGGTCAGTTCAGAAGCCGTTTATCAAAAGCACTTGTTCTAACAAACAGAAAATGGACTTCGACGATTGCTGAAAAAGAGAAAGACCGGTTGACACCTATTGTTGAGACATTGGGTACGTGGTATTTGGGACCTGACTACTCAAAGCCAAACGATAATACTGAGATTTCACTGAAGGACATAGACAACTTGGCAAACAGCTCCTTTCCTCTTTGTATGCGCCACTTGTTTTTCAAGCTCAAAGAGGACCACCACCTGAAGCATGGGGGAAGAATGCAGTTAGGACTCTTTCTGAAGGGTGTTGGGCTGAAATTGGAGGATGCTCTAGCATTTTGGAGAGCAGAGTTTTCTCAAAAGGTGGGTGTGGAGAGATTTGATAAGGAATATGCTTATGGTATACGCCACAATTATGGGAAGGAAGGGAAGAGAACGGATTATAGTCCTTATTCTTGTCAAAAAGTAATTATGTCAACACCTGGTGTAGGAGATCACCATGGTTGCCCTTACCGACATTTCAGTGAGGAGAACTTGCGGGCTGCTCTTGGAAAAATGGGAGTTAATGGTATTACTGTTGATGAAGTGTTGCGTAAAACTCGTGAACATCACTACCAGCTGGCGTGCACATTGACCTTTGAAGCTCTTCATGCATGTTCATGTGACACAGGGATCAACCATCCAAATCAGTATTTTAGTGAGAGCCAAAAAGTCTTACAAGCGAAGAATCCAGTGTTTGAATCCGGGGAATCTCCTGTAACTCCAGTGAAGTCCAAAAGAAGTTGA___TAAAGGATTGTTCTCTCCTAGATTCCAGAGCAGGAAAGTACTTTGGGGATTGTATTGGTCTTGCTAAATATTGTTTGTTTTCAGAAAATAACCTTAAGTCAACAAGATTATCACTCTTGCAAAAGGGTGATTTGTATGTGATAAGCTGAAAATTTATAAGCTGAGCAAAATTGTAATTCGGGAGAACAAGAATCCAATGAACTGCAATGTTCATCTGAGCTTTATGTGTAATAGAGTTGCCATAGTAGCTTCCATGCATGAAAATAGCGGAAACGCTTTTATCGTTAAATGCCCAAGCAATATGGCACTTTCAAGGCTGTTTATTTAAGATGTGTTGTTGGCAGATCATTGGTTAGTATGGATAGCATGCTGCGAGTATACATAATTCTGCATCATATTTCAAGTATGCTTTCCACAGTTACTTTTTATGTAAGCCGTAATATATTTCAAGTACGCTTTCCAT

Fln Alignment:

Contig7235___LSFYQSAPPLEVSLEDFELFAVDRLRVLKGLEDALSRGKKXXXXXXXXXXXWRKHMRTPNAADMMNKDIISHFVLRLVYCRTEELRRWFLQMETTLFRHRFRLEPPDAQRMFMEECKLPYRAITNPEFETVKDKLGQVARSLNQPLPNADSIFYKVPFEEVPELVSGRRVFLQNGYAFVPMNQLAAIVVGQFRSRLSKALVLTNRKWTSTIAEKEKDRLTPIVETLGTWYLGPDYSKPNDNTEISLKDIDNLANSSFPLCMRHLFFKLKEDHHLKHGGRMQXXXXXXXXXXXXEDALAFWRAEFSQKVGVERFDKEYAYGIRHNYGKEGKRTDYSPYSCQKVIMSTPGVGDHHGCPYRHFSEENLRAALGKMGVNGITVDEVLRKTREHHYQLACTLTFEALHACSCDTGINHPNQYFSESQKVLQAKNP
Q84WJ2______________LPLYLTAPHMEVRLEEFELFAIDRLRVLKGVSDGLARARNPNEMDDLVETLWKEHMRLSNVSEMINKDIISHFVLRLVYCRSDELKKWFLSMETALFRHRFRLKKIEEQRAIVGEFGLPYKAVIGAELESLKERLGLVARSHGQISSDVENIYYKVPFEEVPDLVASRRVLLQKGFAFVAGTQLVSLVVTQFRSHLSKALILTNRKWTTTIREREKDRLTPIVEALSTSYLGPDYSQSNEYADISLKDIDQVSKSSFPLCMRHLFEKLREDHHLKHGGRMQLGLFLKGVGLKLDDALAFWREEFTKKVGSERFDKEYAYAIRHNYGKEGKRTDYTPYACSKIITSAPGAGDHHGCPYRHFSEDNLKAALSRMGLSSRGMEDVMDKVRNRHYQLACTLTFEAVYGTSCDTGINHPNQYFEESQKILKSKTP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
935	75		25		0.996473
973	25			75	0.996473
999		80		20	0.995493
1141	14		85		0.993533
1150		85		14	0.993533
1155		14		85	0.993533
1220		90		10	0.90298
1349	84		15		0.999986
1851	28			14	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain