SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7230

Length: 1536 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7230

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear transcription factor Y subunit B-3 [Arabidopsis thaliana] sp\|O23310.1\|NFYB3_ARATH RecName: Full=Nuclear transcription factor Y subunit B-3; Short=AtNF-YB-3; AltName: Full=Transcriptional activator HAP3C emb\|CAB10233.1\| CCAAT-binding transcription	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	-
Sma3	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14540.1	NF-YB3 nuclear factor Y, subunit B3 chr4:8344663-8345148 FORWARD LENGTH=161	72%
RefSeq	Arabidopsis thaliana	NP_193190.1	nuclear transcription factor Y subunit B-3 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002320523.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR95

Fln msg:

Fln protein: MAENYGSPDSSPRSENESGGGHMGGSDFSVKEQDRFLPIANVGRIMKKALPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYREMEGEKVSMAKQGDPTPSKEGNTAINGSSIENPNANAYSGLNPSGYSRVQSQSLPHMQQAAYGQPPGGMVYGHHGHIMGAYNMTAPNSSGGNSSGQQQQQAPRGQW*

Protein Length: 228

Fln nts: ATATCGAACCTCTGTCCCGAAATAATAAAAGCTCAAGCCTTTCTTTTAATAGTCTGACCAGTGCTAAAGCCAGGAGGATTAATACGCCCCCACGGCCAATGCAGTTCTGGCAGCGCACCTTCGGCGCCGTTGGATTTAGATAAGGTGCGAAAATTTTTACGGATAGATTTTGCAGGGAGGCGGGGAATGATTCCTGGCCGAGGCCATTCGAGCGCCATACACATTGCGGCGGACTGCATGAAGTATTGTGTTCAGTAATTCCCTTAATTGGGTCCCAGAATACGTTCTCAGATCTGAAAACGGTTCAGTCCATCGGAGGTTACAGCGATTCGAAGGCCGGAAAACCCTAAAAATCCCTATCCCCCTTTGTCTTTGA_-_ATGGCAGAGAACTATGGCAGCCCGGATAGCAGCCCACGGTCGGAGAACGAATCCGGCGGCGGTCACATGGGCGGCAGCGATTTCTCTGTGAAAGAGCAGGATCGGTTCCTGCCCATAGCCAACGTGGGGCGCATAATGAAGAAGGCCCTGCCTGCCAATGGCAAGGTTTCGAAGGACGCCAAAGAAACTGTGCAGGAGTGCGTCTCTGAGTTTATCAGTTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAAAAGAGAAAGACGATCAACGGCGACGATCTGCTGTGGGCGATGACAACCCTAGGGTTTGAGGACTATGTTGATCCCCTCAAGATCTATCTCCACAAGTACAGAGAAATGGAGGGCGAGAAGGTCTCTATGGCCAAACAAGGAGACCCGACTCCTTCCAAGGAAGGTAACACCGCCATTAATGGCTCCTCAATTGAAAACCCTAATGCTAATGCTTACAGTGGTTTGAACCCCAGCGGTTATAGTAGGGTACAGTCGCAGTCTCTGCCACATATGCAGCAGGCTGCCTATGGGCAACCGCCAGGTGGAATGGTCTATGGCCACCACGGCCACATTATGGGGGCTTACAATATGACCGCCCCAAATAGCAGTGGTGGAAATAGCAGTGGTCAGCAACAGCAGCAAGCCCCCAGAGGCCAATGGTAG___AAATATTTACTTTTTCTTTTCTGTTTTTCTAATTTTAATGGGTCATGTGGGGACAGCTGGTGCCTTAGTTAAAGCAGAATGGCATCACCAACCCAACCAATTCTTAGCTTTGCAGCCTTACTAGTTTTCGGCTGAAATGATTCCATCTATTGCATATTAAAGAAGCCCCTCAAGCTCAGGAGGGCGCTTTGAAGTGCTAAAGACGTCTCTCAAGCTCAGAACACTGGAAAAATGGGCGGGTTGTTGTTACTAACTGTTCTGTAAAAATTTACCAGAAATGTTGTTCAAACTGTCTGTATTTAGTAGGTACTGGATCTTAGTGAATCTGCTTCTGTATATCTATTTTCTCTCGATTTGGAAGATAGTAATATATGTACAACAATTTTCAAGAATGACAGATCTATACATTCTAACTAGGAAAGGAGGTGTTGTAATGTGTTTTAATTGGTTATAGAATGAAGTGTAAAATATATTACATT

Fln Alignment:

Contig7230___MAENYGSPDSSPRSENESGGGHMGGSDFSVKEQDRFLPIANVGRIMKKALPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYREMEGEKVSMAKQGDPTPSKEGNTAINGSSIENPNANAYSGLNPSGYSRVQSQSLPHM-QQAAYGQPPGGMVYGHHGHIMGAYNMTAP-XXXXXXXXXXXXXXAPRGQW
A9NR95______________MAENYGSPDSSPRSENESGGGHMGGSDFSVKEQDRFLPIANVGRIMKKALPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEKVSMAKQGDQIPSKEGNTSINGSSIENSNANAYSGMNPSSYNRVQSQSLPHMQQQAAYGQPPGGMVYGHHGHMIGAYNMAAPNSSGGNSSGQQQQQQAPRGQW

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
377			10	90	0.90298
442	10			90	0.90298
447		10		90	0.90298
469	10		90		0.90298
530		90		10	0.90298
1157	9	87		3	1.0
1455	90		10		0.90298
1460	10			90	0.90298
1465	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain