SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7223

Length: 2260 nt

UniGene Fasta

>sp_v3.0_unigene7223
AGTGATGGTCTATGGCCACTGTCACATTATGGTGATGATGTTATCGTGGGCATGCTGGATACAGGAATATGGCCTGAGAGCAAGAGCTTCAGCGATCATGGCCTAATTGCTCCTGTGCCTAAGAAATGGAAGGGAGAATGTGAAGTGGGTTCGGGCTTCAATGCTTCCCACTGCAACAACAAAGTCATTGGAGCCCGCTACTTTATCAAGGGTTATGAAACCATGTACGGTCGTATTCACGAAAAGGAAGATTACAGATCTCCTCGAGATGCCGACGGTCATGGTACGCATACTTCCTCTACTGCGGCCGGGTCAGAAGTGCCTCGTTCGAGCCTTCTTGGTTTCGCCAGAGGGACGGCCAGAGGGATCGCTACCAAAGCTCGATTGGCCATCTACAAAGTCTGCTGGGCTGTTGACTGCGTTAGCTCCGATGTGCTCGCGGGAATGGAGGCGGCTGTTTCGGACGGAGTTGACTTGCTATCACTCTCGCTTGGCCTAGTTACCGACGTTCCTTATTACCACGATCCTATAGCGATCGGAGCTCTGGGAGCCATTGAGAAGGGTGTTTTTGTCTCGTGTTCGGCTGGTAATTCAGGGCCTTTTGCGATTTTCAACACGGCGCCATGGATAACCACTGTAGGCGCCAGCACCATTGACAGAGAGTTCCCGGCTCCCGTCGTGCTTGGCAACGGAAAAAGCTACATGGGTTCCTCCCTGAACAAACGCAAGGCCCTGGCCAACGAGCAATTGCCTTTGGTATATGGGAAAACAGCTTCGAGTAAGGAGACTGCAATGTTATGCGTCGATGGAAGCCTTGATCCCAATATGGTCCGTGGAAAAATTGTGCTCTGTGATCTTGGAGGAAACACAAGGGCAGAGAAGGGATTGGTCGTGCGACGAGCTGGCGGTGCGGGGATGATTCTGGCGAATCAACCTGAACAAGGAGACGATTCGTCGACCAGTTGTCATTTGTTGCCGACAACGAGGGTCGATTCCAACGCCGGGGAATACATAAAAGTTTATATCAACACCACCAGAAATCCTGTGGCGACTATTAAATCCGAGGGACTGACAGTTGTTGGTAAAGCACGAGCTCCGGCCGTAACCGCCTTTTCGTCCAGAGGGCCGAATGCGGTCGTTCCGGAGATCCTCAAACCCGACCTGATTGCTCCAGGAGTCAATATTTTGGCGGCCTGGACTGGGCACGAAGGACCATCAGGCTTGCTTTCCGATAAAAGAAAAGTAGATTTCAATATACTGTCTGGGACTTCGATGTCATGCCCACATGTGGCCGGCATCGCAGCGCTTCTACGCGCTGCTCATCCGGAATGGACACCCGCTGCAATAAAATCGGCTCTCATGACATCTTCTGTACTACTCGACAATCGCAAAAGCCCTATAAGCGACTCATTCACCTTTTTACCTGCAAACGCCTTTGCAATGGGCGCGGGTCATGTGAATCCCAACGCTGCCTTGCATCCTGGTCTCGTCTATGATCTTGGAATCGATGACTACGTTAGCTTTCTGTGTAGCCTTAATTACACAGCAAATCAAATTCATATGCTAACAAGGAAGGCAATATCCTGTCCCAAAATACGCTCCAGGCCTGGAGATCTCAATTACCCCTCATTCTCCGTGTTGTTTAAGCCGCGTAATTTAGTCCATATTACTAGGAGAACCGTGACTAATGTTGGGGGAGCCCCCTCTGTATATGAAGTCGCAGTGGAGAACCCTGCAAATGTAACTATAATCGTGGAGCCGAAGACGCTCTCCTTCAGAAAGCGAAATGAGAAGGCGAATTATACAGTGAGATTTGAAAGCAAAATAGCATCTGACCACAAGTCTAGCGTTCGCCCAGCGTTCGGCCAAATTCTATGGAAATGTTTGAAAGGTGGAACGCAGGTCGTTCGCAGTCCTGTAGCCATAGTCTGGGAAGACGATGAAAAATGAACCGTCTAATACTGTTATAGAGTAGTTGCCTACAGTGGTTTCGTATAGTATTCCGACAGTTGTGGCCCTCACTAGTTTGAATTGTACTTGATTGAATAAAAGTAGATTCGATCCTTGTTCAGGTCGAGACAAATGCACTGGTCTTTTCTTCCGTTCTTCTAATTATATTAGGTAACTTCCCTCCATTATCGTCTGCATGCTTGGAATTTTGACATTGCCATTAAAGGTAAAATAAAAATTTGATACCCCGCTGGTTTTTAACCTGTTGTACACAAATTCATTATAACTTGATATTCCAGTCATTTACTAA

Ace file of the UniGene sp_v3.0_unigene7223

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	subtilisin-like protease [Arabidopsis thaliana] sp\|O65351.1\|SUBL_ARATH RecName: Full=Subtilisin-like protease; AltName: Full=Cucumisin-like serine protease; Flags: Precursor gb\|AAK25995.1\|AF360285_1 putative subtilisin serine protease ARA12 [Arabidopsis t	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67360.1	ARA12 Subtilase family protein chr5:26872192-26874465 REVERSE LENGTH=757	53%
RefSeq	Arabidopsis thaliana	NP_569048.1	subtilisin-like protease [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002326128.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQQ7

Fln msg: your sequence is shorter than subject: 650 - 772

Fln protein: SDGLWPLSHYGDDVIVGMLDTGIWPESKSFSDHGLIAPVPKKWKGECEVGSGFNASHCNNKVIGARYFIKGYETMYGRIHEKEDYRSPRDADGHGTHTSSTAAGSEVPRSSLLGFARGTARGIATKARLAIYKVCWAVDCVSSDVLAGMEAAVSDGVDLLSLSLGLVTDVPYYHDPIAIGALGAIEKGVFVSCSAGNSGPFAIFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGSSLNKRKALANEQLPLVYGKTASSKETAMLCVDGSLDPNMVRGKIVLCDLGGNTRAEKGLVVRRAGGAGMILANQPEQGDDSSTSCHLLPTTRVDSNAGEYIKVYINTTRNPVATIKSEGLTVVGKARAPAVTAFSSRGPNAVVPEILKPDLIAPGVNILAAWTGHEGPSGLLSDKRKVDFNILSGTSMSCPHVAGIAALLRAAHPEWTPAAIKSALMTSSVLLDNRKSPISDSFTFLPANAFAMGAGHVNPNAALHPGLVYDLGIDDYVSFLCSLNYTANQIHMLTRKAISCPKIRSRPGDLNYPSFSVLFKPRNLVHITRRTVTNVGGAPSVYEVAVENPANVTIIVEPKTLSFRKRNEKANYTVRFESKIASDHKSSVRPAFGQILWKCLKGGTQVVRSPVAIVWEDDEK*

Protein Length: 651

Fln nts: AGTGATGGTCTATGGCCACTGTCACATTATGGTGATGATGTTATCGTGGGCATGCTGGATACAGGAATATGGCCTGAGAGCAAGAGCTTCAGCGATCATGGCCTAATTGCTCCTGTGCCTAAGAAATGGAAGGGAGAATGTGAAGTGGGTTCGGGCTTCAATGCTTCCCACTGCAACAACAAAGTCATTGGAGCCCGCTACTTTATCAAGGGTTATGAAACCATGTACGGTCGTATTCACGAAAAGGAAGATTACAGATCTCCTCGAGATGCCGACGGTCATGGTACGCATACTTCCTCTACTGCGGCCGGGTCAGAAGTGCCTCGTTCGAGCCTTCTTGGTTTCGCCAGAGGGACGGCCAGAGGGATCGCTACCAAAGCTCGATTGGCCATCTACAAAGTCTGCTGGGCTGTTGACTGCGTTAGCTCCGATGTGCTCGCGGGAATGGAGGCGGCTGTTTCGGACGGAGTTGACTTGCTATCACTCTCGCTTGGCCTAGTTACCGACGTTCCTTATTACCACGATCCTATAGCGATCGGAGCTCTGGGAGCCATTGAGAAGGGTGTTTTTGTCTCGTGTTCGGCTGGTAATTCAGGGCCTTTTGCGATTTTCAACACGGCGCCATGGATAACCACTGTAGGCGCCAGCACCATTGACAGAGAGTTCCCGGCTCCCGTCGTGCTTGGCAACGGAAAAAGCTACATGGGTTCCTCCCTGAACAAACGCAAGGCCCTGGCCAACGAGCAATTGCCTTTGGTATATGGGAAAACAGCTTCGAGTAAGGAGACTGCAATGTTATGCGTCGATGGAAGCCTTGATCCCAATATGGTCCGTGGAAAAATTGTGCTCTGTGATCTTGGAGGAAACACAAGGGCAGAGAAGGGATTGGTCGTGCGACGAGCTGGCGGTGCGGGGATGATTCTGGCGAATCAACCTGAACAAGGAGACGATTCGTCGACCAGTTGTCATTTGTTGCCGACAACGAGGGTCGATTCCAACGCCGGGGAATACATAAAAGTTTATATCAACACCACCAGAAATCCTGTGGCGACTATTAAATCCGAGGGACTGACAGTTGTTGGTAAAGCACGAGCTCCGGCCGTAACCGCCTTTTCGTCCAGAGGGCCGAATGCGGTCGTTCCGGAGATCCTCAAACCCGACCTGATTGCTCCAGGAGTCAATATTTTGGCGGCCTGGACTGGGCACGAAGGACCATCAGGCTTGCTTTCCGATAAAAGAAAAGTAGATTTCAATATACTGTCTGGGACTTCGATGTCATGCCCACATGTGGCCGGCATCGCAGCGCTTCTACGCGCTGCTCATCCGGAATGGACACCCGCTGCAATAAAATCGGCTCTCATGACATCTTCTGTACTACTCGACAATCGCAAAAGCCCTATAAGCGACTCATTCACCTTTTTACCTGCAAACGCCTTTGCAATGGGCGCGGGTCATGTGAATCCCAACGCTGCCTTGCATCCTGGTCTCGTCTATGATCTTGGAATCGATGACTACGTTAGCTTTCTGTGTAGCCTTAATTACACAGCAAATCAAATTCATATGCTAACAAGGAAGGCAATATCCTGTCCCAAAATACGCTCCAGGCCTGGAGATCTCAATTACCCCTCATTCTCCGTGTTGTTTAAGCCGCGTAATTTAGTCCATATTACTAGGAGAACCGTGACTAATGTTGGGGGAGCCCCCTCTGTATATGAAGTCGCAGTGGAGAACCCTGCAAATGTAACTATAATCGTGGAGCCGAAGACGCTCTCCTTCAGAAAGCGAAATGAGAAGGCGAATTATACAGTGAGATTTGAAAGCAAAATAGCATCTGACCACAAGTCTAGCGTTCGCCCAGCGTTCGGCCAAATTCTATGGAAATGTTTGAAAGGTGGAACGCAGGTCGTTCGCAGTCCTGTAGCCATAGTCTGGGAAGACGATGAAAAATGA___ACCGTCTAATACTGTTATAGAGTAGTTGCCTACAGTGGTTTCGTATAGTATTCCGACAGTTGTGGCCCTCACTAGTTTGAATTGTACTTGATTGAATAAAAGTAGATTCGATCCTTGTTCAGGTCGAGACAAATGCACTGGTCTTTTCTTCCGTTCTTCTAATTATATTAGGTAACTTCCCTCCATTATCGTCTGCATGCTTGGAATTTTGACATTGCCATTAAAGGTAAAATAAAAATTTGATACCCCGCTGGTTTTTAACCTGTTGTACACAAATTCATTATAACTTGATATTCCAGTCATTTACTAA

Fln Alignment:

Contig7223___DGLWPLSHYGDDVIVGMLDTGIWPESKSFSDHGLIAPVPKKWKGECEVGSGFNASHCNNKVIGARYFIKGYETMYGRIHEKEDYRSPRDADGHGTHTSSTAAGSEVPRSSLLGFARGTARGIATKARLAIYKVCWAVDCVSSDVLAGMEAAXXXXXXXXXXXXXXXTDVPYYHDPIAIGALGAIEKGVFVSCSAGNSGPFAIFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGSSLNKRKALANEQLPLVYGKTASSKETAMLCVDGSLDPNMVRGKIVLCDLGGNTRAEKGLVVRRAGGAGMILANQPEQGDDSSTSCHLLPTTRVDSNAGEYIKVYINTTRNPVATIKSEGLTVVGKARAPAVTAFSSRGPNAVVPEILKPDLIAPGVNILAAWTGHEGPSGLLSDKRKVDFNILSGTSMSCPHVAGIAALLRAAHPEWTPAAIKSALMTSSVLLDNRKSPISDSFTFLPANAFAMGAGHVNPNAALHPGLVYDLGIDDYVSFLCSLNYTANQIHMLTRKAISCPKIRSRPGDLNYPSFSVLFKPRNLVHITRRTVTNVGGAPSVYEVAVENPANVTIIVEPKTLSFRKRNEKANYTVRFESKIASDHKSSVRPAFGQILWKCLKGGTQVVRSPVAIVWED
B8LQQ7______________DGLWPQSHYGEDVIVGLLDTGVWPESKSFSDEGLTSRVPAKWKGECEVGSDFNASHCNNKLIGARYFVKGYEAMYGRIDKKEDYRSPRDADGHGTHTSSTAAGSEVPGASLFGFARGTARGIATKARLAVYKVCWAVTCVNSDVLAGMEAAVADGVDLLSLSLGIVDDVPYYHDTIAIGALGAIEKGVFVSCSAGNAGPYAIFNTAPWITTVGASTIDREFPAPVVLGNGKSYMGSSLDKDKTLAKEQLPLVYGKTASSKQYANFCIDGSLDPDMVRGKIVLCDLEEGGRIEKGLVVRRAGGAGMILASQFKEEDYSATYSNLLPATMVDLKAGEYIKAYMNTTRNPLATIKTEGLTVIGKARAPVVIAFSSRGPNRVAPEILKPDLVAPGVNILAAWTGHTSPTGLISDKRRVDFNIISGTSMSCPHVAGIAALIRSAHPAWTPAAIKSALMTSSALFDNRKSPISDSITALPADALAMGAGHVNPNAALDPGLVYDLGIDDYVSFLCSLNYTAKHIQILTKNATSCPKLRSRPGDLNYPSFSVVFKPRSLVRVTRRTVTNVGGAPSVYEMAVESPENVNVIVEPRTLAFTKQNEKATYTVRFESKIASDNKSKRHRGFGQILWKCVKGGTQVVRSPVAIAWKD

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1721		66		33	0.997452
1852		75	25		0.996473
1897	83	16			0.994512
1964	11		88		0.923564
1969	88		11		0.923564
2173	66		33		0.997452
2204	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain