SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7213

Length: 2332 nt

UniGene Fasta

>sp_v3.0_unigene7213
CGTCGTGACCTTGGCTGTCACTCAGTTTTCACTACCCTGTTCAAGCCATTCTACTCAGGCCCTGCCGTAACCGCTACGCTCGCCATCTCCTAGAGAGTCTCGGGGGCCTGTTCTCTTATATTAACGCTGAATTGAATTTGATCTGTTCCGGGTTCTTTCCGTCTCTGGAGGTTTTATGAAAAATGGCCGGTTCTACAAGCCTGGATTTTGTGGGTATTGGCGGCGAAAGCCCTGTTGCTGGGATTGCCTTTGAAGTAGACGTGACGGACTCTAATGGGACGCCTCAAAGTGTGCCGAAGAGGGTCAGACGCCGCTTTTTGGAGGCGCCTGAAAACAAGCCCAGGACGCCATCCAGTCTTGAAGAAATTGAAGCTAAGCTCAAAGAAGCCGGCCTCAGGCGCCAGCAATTTCATGAGTGGTTGGCAAACAAGGCTCGGCCTAAGCCTCGAAGTCCAACTCGGTCTGCAAACCCTGAAGACTTGGCACAACGCCTCGAAGCCAAGCTTTCTGCGGCTGAGCAAAAGAGGTTGGAGCTCTTGGCACAGGCACAGATGCGTTTAGCCAAGTCAGATGAGCTACGACAAGCGGTTAAAACAGAAGTGCAACTGCGTGCTGAAAGGGAGCGTGAGGAGCTGGAATCAAAAGTGGAATCCCGTGTGCAGCAGGCAGAGATAAACAGGATGGCTCTTGATAAACAACGGAGGGCTGCTGCCCAGGAGAGGATGGCCCATTCCCTTCTGCATCGAATGCTGCAGGAAGATAAAGATAAAGAGCGTATGGAAACACATTATGCAACAATATGTCAAAGAGTTGCAGCTGCGGAGGAGAAGCGTTTGGGTCTTTTAGAGGCTGAAAAAACTCGTGCACATGCAATAGTTATGCAAGCTAGAAAGGTTGCCAATTCTGTCTGTATTCAGAGGGAAATGGAGATTACAAATTTGAAGGAGAAGCTGGAAAATCGATTACAAAGGGCAAAACGCAAAAGAGCAGAACTTCTAAGGCAAAGAGGAAGATGTGGAGGTATCAGTCATATTAATCACCACAAAATGTACAAGCATGGGGACCATCTCTCAAGAAAGTTGGCCAGGGTTTGGAGGCAGTTCCAAAGGTCAAGACGTACAACATATGCTTTAGCACGGGAGTTTACTGCATGTGAAATCAGTCATTCCTCTGTTAATTCAGTTCCTTTTGAGCAGCTTGCAGCTCGCATACAATCAACTTCCACATTACAGGCTGTGAAAGCACTTCTAGCTCGCATTGAGAGTCGGTTTTTGGTGTCACAAGCAAGACAGTCTAATGTTGCACAGATAGATCATTTGCTTAAGCGGTTATGTCCAGGACACAAGAAAATGTCTTTAACTGGAAATAGAGCTGCAAAGATGGCTGTTTCTCAAGTGTCTAACAAAGGGACAACTAGAGGTCAAAATGTTGAAGGAAAGGAACTGTTAAGGTATCCGGTACGTGTCTTTTTGTGTGCCTATATGATTTTGGGTCATCCTGAGGCTGTCTTCAGTGGTAGAGGAGACCGTGAAACTGCACTCGCAGAAGCAGCAGCTAGGCTTATTCCAGAGTTTGAATCCTTAATCACTATTATATTAGATGGGCCTTCTTCTAGCTCTCTGTCAAGACCTTGTTCTCCAAATGCAGCAGCCGATGATTGGGGTTCTGAAGAACCTCAGACTTTAAGTCAACAGAGGCCTTTCGCAGCCCAGCTGGCTGCATTTGATGCTGCCTGGTGCTCTTATTTATATCAATTTGTCTTGTGGAAAGTCAAGGATGCACAATCCCTTGAAGATGATTTAATTAGAGTGGCTTGCCAACTTGAAGTTTCAATGCTGCAGAAGTGCAAGATAACATCAGGAGATGAGGATGAGTCATGACTCAAAGGCCATTCTCGCAAGCAGGTGACACGCCTTGCTCGGGTTACCCTTGCCACCAGTTAGAGGACGTGGTCTACCTCCTATAGCTCCTACTTCTAGTTCTTCAGACTCCATTGCCAACTCCACCAGTGCCAGCATCTACATCTAGAGGGAAAGGGAAAGCTGTGGCATTTTCTCGCAAGAGGGGCAGAGGAAATCAATAGGATTACACTTTAGTTGTTTTCTTCATTTGATTGTATATGACATTATGACATGATGAGATACATTATTATATTTTTTGTTGATATTTTGAGGCTGAGTTGGGACTCAGGAGTCAGGACTTACTATTCAGGACATGATTCAATGTTATGTGTGATTTTAGCACTAGAAATGATATTAAACATCTTATATATTAGTTCTTTTATCATATTTATGTGTCAATGTATTTATTTTATGTTGTAGATGTAGATATT

Ace file of the UniGene sp_v3.0_unigene7213

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Macoilin multi-domain protein	-	-	3.0e-10	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	Gene names
Sma3	At1g22930; At4g09150; F19G10.11; GSVIVT00001808001; GSVIVT00026451001; H0525C06.4; OJ000114_01.6; OJ1008_F08.17-1; OJ1008_F08.17-2; Os02g0556700; Os04g0439100; OsI_16001; OsJ_07136; OsJ_14907; PHYPADRAFT_134192; PHYPADRAFT_187677; POPTRDRAFT_584463; POPTR

Source	GOs	Term	Type	e value	Identity
Sma3	phosphopantetheine binding	GO:0031177	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	T-complex 11	IPR008862	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22930.1	T-complex protein 11 chr1:8117521-8121854 FORWARD LENGTH=1131	47%
RefSeq	Arabidopsis thaliana	NP_173706.1	T-complex protein 11 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002331460.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQZ8

Fln msg:

Fln protein: MGRLKVCRRGSDAAFWRRLKTSPGRHPVLKKLKLSSKKPASGASNFMSGWQTRLGLSLEVQLGLQTLKTWHNASKPSFLRLSKRGWSSWHRHRCV*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCACTACCCTGTTCAAGCCATTCTACTCAGGCCCTGCCGTAACCGCTACGCTCGCCATCTCCTAGAGAGTCTCGGGGGCCTGTTCTCTTATATTAACGCTGAATTGAATTTGATCTGTTCCGGGTTCTTTCCGTCTCTGGAGGTTTTATGAAAAATGGCCGGTTCTACAAGCCTGGATTTTGTGGGTATTGGCGGCGAAAGCCCTGTTGCTGGGATTGCCTTTGAAGTAGACGTGACGGACTCTA_-_ATGGGACGCCTCAAAGTGTGCCGAAGAGGGTCAGACGCCGCTTTTTGGAGGCGCCTGAAAACAAGCCCAGGACGCCATCCAGTCTTGAAGAAATTGAAGCTAAGCTCAAAGAAGCCGGCCTCAGGCGCCAGCAATTTCATGAGTGGTTGGCAAACAAGGCTCGGCCTAAGCCTCGAAGTCCAACTCGGTCTGCAAACCCTGAAGACTTGGCACAACGCCTCGAAGCCAAGCTTTCTGCGGCTGAGCAAAAGAGGTTGGAGCTCTTGGCACAGGCACAGATGCGTTTAG___CCAAGTCAGATGAGCTACGACAAGCGGTTAAAACAGAAGTGCAACTGCGTGCTGAAAGGGAGCGTGAGGAGCTGGAATCAAAAGTGGAATCCCGTGTGCAGCAGGCAGAGATAAACAGGATGGCTCTTGATAAACAACGGAGGGCTGCTGCCCAGGAGAGGATGGCCCATTCCCTTCTGCATCGAATGCTGCAGGAAGATAAAGATAAAGAGCGTATGGAAACACATTATGCAACAATATGTCAAAGAGTTGCAGCTGCGGAGGAGAAGCGTTTGGGTCTTTTAGAGGCTGAAAAAACTCGTGCACATGCAATAGTTATGCAAGCTAGAAAGGTTGCCAATTCTGTCTGTATTCAGAGGGAAATGGAGATTACAAATTTGAAGGAGAAGCTGGAAAATCGATTACAAAGGGCAAAACGCAAAAGAGCAGAACTTCTAAGGCAAAGAGGAAGATGTGGAGGTATCAGTCATATTAATCACCACAAAATGTACAAGCATGGGGACCATCTCTCAAGAAAGTTGGCCAGGGTTTGGAGGCAGTTCCAAAGGTCAAGACGTACAACATATGCTTTAGCACGGGAGTTTACTGCATGTGAAATCAGTCATTCCTCTGTTAATTCAGTTCCTTTTGAGCAGCTTGCAGCTCGCATACAATCAACTTCCACATTACAGGCTGTGAAAGCACTTCTAGCTCGCATTGAGAGTCGGTTTTTGGTGTCACAAGCAAGACAGTCTAATGTTGCACAGATAGATCATTTGCTTAAGCGGTTATGTCCAGGACACAAGAAAATGTCTTTAACTGGAAATAGAGCTGCAAAGATGGCTGTTTCTCAAGTGTCTAACAAAGGGACAACTAGAGGTCAAAATGTTGAAGGAAAGGAACTGTTAAGGTATCCGGTACGTGTCTTTTTGTGTGCCTATATGATTTTGGGTCATCCTGAGGCTGTCTTCAGTGGTAGAGGAGACCGTGAAACTGCACTCGCAGAAGCAGCAGCTAGGCTTATTCCAGAGTTTGAATCCTTAATCACTATTATATTAGATGGGCCTTCTTCTAGCTCTCTGTCAAGACCTTGTTCTCCAAATGCAGCAGCCGATGATTGGGGTTCTGAAGAACCTCAGACTTTAAGTCAACAGAGGCCTTTCGCAGCCCAGCTGGCTGCATTTGATGCTGCCTGGTGCTCTTATTTATATCAATTTGTCTTGTGGAAAGTCAAGGATGCACAATCCCTTGAAGATGATTTAATTAGAGTGGCTTGCCAACTTGAAGTTTCAATGCTGCAGAAGTGCAAGATAACATCAGGAGATGAGGATGAGTCATGACTCAAAGGCCATTCTCGCAAGCAGGTGACACGCCTTGCTCGGGTTACCCTTGCCACCAGTTAGAGGACGTGGTCTACCTCCTATAGCTCCTACTTCTAGTTCTTCAGACTCCATTGCCAACTCCACCAGTGCCAGCATCTACATCTAGAGGGAAAGGGAAAGCTGTGGCATTTTCTCGCAAGAGGGGCAGAGGAAATCAATAGGATTACACTTTAGTTGTTTTCTTCATTTGATTGTATATGACATTATGACATGATGAGATACATTATTATATTTTTTGTTGATATTTTGAGGCTGAGTTGGGACTCAGGAGTCAGGACTTACTATTCAGGACATGATTCAATGTTATGTGTGATTTTAGCACTAGAAATGATATTAAACATCTTATATATTAGTTCTTTTATCATATTTATGTGTCAATGTATTTATTTTATGTTGTAGATGTAGATATT

Fln Alignment:

Contig7213___MGRLKVCRRGSDAAFWRRLKTSPGRHPVXXXXXXXXXXPASGASNFMSGWQTRLGLSLEVQLGLQTLKTWHNASKPSFLRLSKRGWSSWHRHRC
A9NQZ8______________MGRLKMCRRGLDDASWRRLRISRGRHPVSKRLKLSSKKPTSGASNFMSGWQTRLGQSLEVQLGLQTLKTWHNASKPSFLLLSKRGWSFWHRHRC

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
1205	12		87		0.992554
1274	83		16		0.994512
1384			83	16	0.994512
1385		83	16		0.994512
1386			16	83	0.994512
1393	83		16		0.994512
1400		33		66	1.0
1521		87		12	0.992554
1549	10		90		0.90298
1608	77	22			0.999999
1734	81		18		0.999994
1736		18		81	0.999994
1740		18		81	0.999994
1741		18	81		0.999994
1742		81		18	0.999994
1745		85	14		0.999981
1749			84	15	0.999986
1750		15		84	0.999986
1751	15		84		0.999986
1796	83	16			0.999991
1924		75		25	1.0
1930	11		88		0.923564
1933		87		12	0.992554
2028			83	16	0.994512
2032	16	83			0.994512
2041	16		83		0.994512
2045	33		66		0.997452
2102		60	40		1.0
2107		20		80	0.995493
2112	40		60		1.0
2125			60	40	1.0
2148		16	83		0.994512
2149	83		16		0.994512
2153			83	16	0.994512
2157		50		50	1.0
2158	80		20		0.995493
2163		25		75	0.996473
2164	75			25	0.996473
2167			33	66	0.997452
2190	33		66		1.0
2203	33		66		0.997452
2208		66		33	0.997452
2210			33	66	1.0
2222		66	33		0.997452
2225	33		66		0.997452
2231	66			33	0.997452
2241	66		33		0.997452
2243			88	11	0.923564
2244	11	11		77	0.968132
2245	22		77		0.999999
2246		22		77	0.999999
2250			22	77	0.999999
2252			25	75	1.0
2268	87		12		0.992554
2302		16		83	0.994512
2303		16		83	0.994512
2304		16		83	0.994512
2307	20		80		0.995493
2330	33			66	0.997452
2332	33			66	0.997452
2333	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain