SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7198

Length: 2039 nt

UniGene Fasta

>sp_v3.0_unigene7198
GCATGGTGGAGAAGCTGCTTATGCCTGTTGACGAGGGTTTGAATGAGCACAAGCGGGCGCAGTTGAGAGAGCTTGCGGCACTTAATGGGACAATCGGGATGATGAATTCTGCAGGCTTTGTGGTGAACCAGGTCATAGGCAATATGCTTGCCCTACAAGGCTTATAGGTTTCAAAAGTGATGTTTCGTGTAGAATTTGTGGTGATGGTGGTCATCCGACTATTGATTGTCCAATGAAGGGATCGGGGAAGAAGATGGATGATGAATACCAGAACTTTCTGGCTGAATTAGGGGGTGGCACTCCTGAGTCATCGGTTGCTAAAGTGGGTGACAGTGGTCGTCAGAATCAGACATTGTATCTCACTGGCTCACAAAATGGGAACCCTCCATGGAAAGAAAGCAGTGGAATGGGCTTGGGTTATAATGGGACGCAGCAAGGTCAGCAACCAAATAACTTTCAGTCTGGAATTGGATCGAAATTTTCAAAGGATCATGACGATTCTAATCTATATATAGGATACTTGCCTCCTCAGATTGATGACGACGGACTAATTCAGTTGTTTGCACCTTTTGGAGACATTGTTGCGGTGAAGGTCATCAAGGATCGCTTAACGGGGGCAAGCAAAGGATATGGCTTTGTTAAGTTCTCTGATACTGCTTCAGCTGCACAGGCAGTGTTGCATATGAATGGGTACCGTTTGGATGGGAGGGTTATGGCAGTCAGAGTTGCAGGCAGGCCACCACAAGCTGGTTTTCCTGGAGGTGGCCAAACCCCAATGCCTGTTATGTATCCTGGATCGGATCCCTCTGCAGCAGGTTATTCTTCACAGCAGTTTCCTCCAGGACCACCGTCTGGAAATTCAATGGCAGCAGGGAACACGGTACCTGCTCCGGTTCCATGGGGTCCACCTGTTCCACCTCCACAATACAACCCTTATGCACCGCCTCCACCAAGACCCACTATGTATGGTGAAACATATCATCCACAGGGGGGTACTTACCCTGGACCCCCGATGCAAGGACCTCCTCCACCTGGTACAGCCCATCAAAATATGATGCAACCTCCACCATTCGGGGGACCTTATCCTGTACAGGGACCTCCTCTGCCTGGCCCACCACCTCAGACTATGCCTCCTGCTGAACCACCTCAAAGCTTGCCTCCAGGTGTGCCGCCTCAGAATTTGCCACCGCAAGCATCTTCTGGTGGCTCCCAACATGGAGGTCCTCCAGGTACAGTCCCTAGTAATACTGGAAGTACAATGATGGCCATGCCACAAGTTGGTCCTCCTGCATATCCCCCTCCACCTCAGTATCAAGGTTATTATGGTGCTCCACCTCCTCCAAGTGCCCCCGCAGGTCCTGCACAGTGTATAGGTAGTGTTCCACCTCCATGGGTGGCAAACCCTGCTCCGCCTCCGCCCCCCCCTCCATCATCATCAGAGACAACCTATGCTGTTGAGTCAGAATATGAGAAATTCATGTCTGAAATGGGACAATGATTTTTTTGGCAATTCTCACGATGAACGGGGTTGATGTTTGTTGGAGGAAAGCTGACATGATTTATGTTTAGAATTCTGACACACAGACTTTTCGAAGCTTGGAAACTCACATGTTATATTTAACCTTGTTTATGGTGAAGAGTAACTGTTGCAGAGCTGTTCAACTTATACAAGAAAGGAGCAAATCGAGATATTAATGTAGCTGTTGAAATTGTTGAATGCCTTTATGAATAGGTTGGGAGGGACTTGTTTAACATTGTTTCATTGATTTAAGGGGGGATGGATGCAGAGATATTCAATTGCAGGCTTTAACTTGTTAGATTTAATGTTTTGTTATGAAGATGTTCTAGGGTTGCTAATCCTTTTGAGCCTGCAGTTTGGCGAATATGCCCTTGCAAATGGTTTTTATTATGAGAAGCTGTTTACCAAAATTTAAATTTGTTAAAACTCTATCTTTTCTGTGTAGCGCTAACTTGATGATTGTGGCCAGGTTTAAATTTATCCTCCAATTTGCTTAAAAATAAATTCGCACCACTGTTGC

Ace file of the UniGene sp_v3.0_unigene7198

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor 1 [Arabidopsis thaliana] ref\|NP_851169.1\| splicing factor 1 [Arabidopsis thaliana] ref\|NP_001032055.1\| splicing factor 1 [Arabidopsis thaliana] dbj\|BAA97393.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN13087.1\| unknown protein [	-	-	0.0	56%
FL-Next	sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%

Source	Gene names
Sma3	AT5G51300; At5g51300; GSVIVT00027806001; H0124B04.13; OSJNBa0032F06.17; OSJNBa0044M19.2; Os04g0385700; Os04g0682400; OsI_15642; OsI_17967; OsJ_14553; OsJ_16667; PHYPADRAFT_185832; PHYPADRAFT_189930; POPTRDRAFT_1073828; POPTRDRAFT_423773; RCOM_1500890;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51300.1	splicing factor-related chr5:20849881-20852295 REVERSE LENGTH=804	56%
RefSeq	Arabidopsis thaliana	NP_199943.1	splicing factor 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002303489.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SVM8

Fln msg: your sequence is longer than subject: 422 - 158

Fln protein: MKGSGKKMDDEYQNFLAELGGGTPESSVAKVGDSGRQNQTLYLTGSQNGNPPWKESSGMGLGYNGTQQGQQPNNFQSGIGSKFSKDHDDSNLYIGYLPPQIDDDGLIQLFAPFGDIVAVKVIKDRLTGASKGYGFVKFSDTASAAQAVLHMNGYRLDGRVMAVRVAGRPPQAGFPGGGQTPMPVMYPGSDPSAAGYSSQQFPPGPPSGNSMAAGNTVPAPVPWGPPVPPPQYNPYAPPPPRPTMYGETYHPQGGTYPGPPMQGPPPPGTAHQNMMQPPPFGGPYPVQGPPLPGPPPQTMPPAEPPQSLPPGVPPQNLPPQASSGGSQHGGPPGTVPSNTGSTMMAMPQVGPPAYPPPPQYQGYYGAPPPPSAPAGPAQCIGSVPPPWVANPAPPPPPPPSSSETTYAVESEYEKFMSEMGQ*

Protein Length: 423

Fln nts: GCATGGTGGAGAAGCTGCTTATGCCTGTTGACGAGGGTTTGAATGAGCACAAGCGGGCGCAGTTGAGAGAGCTTGCGGCACTTAATGGGACAATCGGGATGATGAATTCTGCAGGCTTTGTGGTGAACCAGGTCATAGGCAATATGCTTGCCCTACAAGGCTTATAGGTTTCAAAAGTGATGTTTCGTGTAGAATTTGTGGTGATGGTGGTCATCCGACTATTGATTGTCCA_-_ATGAAGGGATCGGGGAAGAAGATGGATGATGAATACCAGAACTTTCTGGCTGAATTAGGGGGTGGCACTCCTGAGTCATCGGTTGCTAAAGTGGGTGACAGTGGTCGTCAGAATCAGACATTGTATCTCACTGGCTCACAAAATGGGAACCCTCCATGGAAAGAAAGCAGTGGAATGGGCTTGGGTTATAATGGGACGCAGCAAGGTCAGCAACCAAATAACTTTCAGTCTGGAATTGGATCGAAATTTTCAAAGGATCATGACGATTCTAATCTATATATAGGATACTTGCCTCCTCAGATTGATGACGACGGACTAATTCAGTTGTTTGCACCTTTTGGAGACATTGTTGCGGTGAAGGTCATCAAGGATCGCTTAACGGGGGCAAGCAAAGGATATGGCTTTGTTAAGTTCTCTGATACTGCTTCAGCTGCACAGGCAGTGTTGCATATGAATGGGTACCGTTTGGATGGGAGGGTTATGGCAGTCAGAGTTGCAGGCAGGCCACCACAAGCTGGTTTTCCTGGAGGTGGCCAAACCCCAATGCCTGTTATGTATCCTGGATCGGATCCCTCTGCAGCAGGTTATTCTTCACAGCAGTTTCCTCCAGGACCACCGTCTGGAAATTCAATGGCAGCAGGGAACACGGTACCTGCTCCGGTTCCATGGGGTCCACCTGTTCCACCTCCACAATACAACCCTTATGCACCGCCTCCACCAAGACCCACTATGTATGGTGAAACATATCATCCACAGGGGGGTACTTACCCTGGACCCCCGATGCAAGGACCTCCTCCACCTGGTACAGCCCATCAAAATATGATGCAACCTCCACCATTCGGGGGACCTTATCCTGTACAGGGACCTCCTCTGCCTGGCCCACCACCTCAGACTATGCCTCCTGCTGAACCACCTCAAAGCTTGCCTCCAGGTGTGCCGCCTCAGAATTTGCCACCGCAAGCATCTTCTGGTGGCTCCCAACATGGAGGTCCTCCAGGTACAGTCCCTAGTAATACTGGAAGTACAATGATGGCCATGCCACAAGTTGGTCCTCCTGCATATCCCCCTCCACCTCAGTATCAAGGTTATTATGGTGCTCCACCTCCTCCAAGTGCCCCCGCAGGTCCTGCACAGTGTATAGGTAGTGTTCCACCTCCATGGGTGGCAAACCCTGCTCCGCCTCCGCCCCCCCCTCCATCATCATCAGAGACAACCTATGCTGTTGAGTCAGAATATGAGAAATTCATGTCTGAAATGGGACAATGA___TTTTTTTGGCAATTCTCACGATGAACGGGGTTGATGTTTGTTGGAGGAAAGCTGACATGATTTATGTTTAGAATTCTGACACACAGACTTTTCGAAGCTTGGAAACTCACATGTTATATTTAACCTTGTTTATGGTGAAGAGTAACTGTTGCAGAGCTGTTCAACTTATACAAGAAAGGAGCAAATCGAGATATTAATGTAGCTGTTGAAATTGTTGAATGCCTTTATGAATAGGTTGGGAGGGACTTGTTTAACATTGTTTCATTGATTTAAGGGGGGATGGATGCAGAGATATTCAATTGCAGGCTTTAACTTGTTAGATTTAATGTTTTGTTATGAAGATGTTCTAGGGTTGCTAATCCTTTTGAGCCTGCAGTTTGGCGAATATGCCCTTGCAAATGGTTTTTATTATGAGAAGCTGTTTACCAAAATTTAAATTTGTTAAAACTCTATCTTTTCTGTGTAGCGCTAACTTGATGATTGTGGCCAGGTTTAAATTTATCCTCCAATTTGCTTAAAAATAAATTCGCACCACTGTTGC

Fln Alignment:

Contig7198___SNLYIGYLPPQIDDDGLIQLFAPFGDIVAVKVIKDRLTGASKGYGFVKFSDTASAAQAVLHMNGYRLDGRVMAVRVAGRPPQA--------GFPGGG
Q9SVM8______________TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGGG

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
778		66	33		0.997452
779		66		33	0.997452
781	66		33		0.997452
788			66	33	0.997452
789			33	66	0.997452
790			33	66	0.997452
791	66	33			0.997452
798	33	66			0.997452
1003		88		11	0.923564
1004			11	88	0.923564
1005			11	88	0.923564
1006	88		11		0.923564
1179		88	11		0.923564
1277	11		88		0.923564
1290	10	90			0.90298
1291	10	90			0.90298
1293		90	10		0.90298
1302		90		10	0.90298
1341	10	90			0.90298
1375	11		88		0.923564
1377	88		11		0.923564
1378			11	88	0.923564
1379	88		11		0.923564
1404	14		85		0.993533
1428		75		25	0.996473
1429		50		25	0.995533
1431		75	25		0.996473
1437		20		80	0.995493
1439	80			20	0.995493
1440		20		80	0.995493
1448			80	20	0.995493
1501	83	16			0.994512
1843	10		90		0.90298
1931	25	75			0.996473
1949	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain