SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7178

Length: 1269 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7178

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dehydration-responsive element-binding protein 3 [Arabidopsis thaliana] sp\|Q9LYD3.1\|DREB3_ARATH RecName: Full=Dehydration-responsive element-binding protein 3; AltName: Full=Protein TINY 2 emb\|CAB87719.1\| transcription factor like protein [Arabidopsis tha	-	-	3.0e-36	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	AP2/ERF domain-containing transcription factor	-	-	3.809e-28	-

Source	Gene names
Sma3	At1g01250; At1g12630; At1g77200; At2g25820; At2g35700; At2g36450; At3g16280; At3g60490; At4g16750; At4g32800; At5g11590; At5g25810; B1015E06.11; C1190ERIPDM; CBF1; CBF1B; CBF4; CBF7; CMe-DREB1; Cbf2; DREB3; DREB56; DREB57; DREB58; DREB59; DREB60; DREB64;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM17

Fln msg:

Fln protein: MQSRSRKRRAAEINNADDSGEEESAVCNGDKQGGRGKGNRHPVYRGVRMRTWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALSIKGKSAFLNFPNLVASLPRPVTLSPKDIQAAAAAAAAEFQIPKDLSKDRSLDLAEMSSVSPVHGDALVPAESRNNEQAVATDCAPSNLAWVSSFLSENESMIIDDDILFDLPNFLCNMAEGLLVAPPWLLEQEDLYGNNYYAADNVYEGNGVMSLWN*

Protein Length: 248

Fln nts: CCCAACGTGATCTGGGCCTCGCCAGTATTGGAACGGGCGTTGGCCATACGGAGGGTAGCTGCTTGATTGTAATTTTTCATTGTATTGCGGCCTCCGCACATATATATACAGCAACCAATTCCACGTTGTTTGCCATCAGTTAATTAGGGCCAAGGCATCGTGATAAGGTTGAGTGTATATTCGACATTCGGCGAGAATGGTACTCTCGTTTGAACCAGAGTCGAGTCCCTGTTGCGGCTTGAATGAGCAGCAGGGCCGTAGTAGTTGTGCAGATTGTGGTCCTCTGGTTTCTATAAATTCGTGTATATGTCCTGATCTGTGAGAGGGGAACTGTATATATCACTCTGCCATAATTGATGCAGCTTCATCTACTTCCACCGGAAGCTCCGGCTCGGATTCTGCGCTCGCATTA_-_ATGCAGAGTAGGTCGCGTAAGCGCCGTGCTGCGGAGATTAATAATGCAGACGATTCTGGCGAAGAGGAATCTGCTGTTTGTAATGGAGATAAGCAGGGGGGACGAGGTAAAGGAAACCGGCACCCTGTTTACAGAGGCGTGAGAATGAGGACTTGGGGAAAATGGGTTTCAGAGATTCGAGAGCCCAAGAAGAAGTCAAGAATTTGGCTGGGGACGTTCCCCACACCAGAGATGGCGGCTCGAGCCCACGACGTAGCGGCTCTGAGCATCAAGGGGAAATCTGCATTTCTCAATTTCCCCAACCTCGTGGCTTCGTTGCCTCGACCTGTTACATTGTCCCCAAAGGACATCCAAGCAGCCGCTGCGGCCGCTGCGGCTGAGTTTCAAATACCAAAAGATCTTAGCAAGGATCGATCCCTGGACCTCGCGGAGATGAGCTCTGTGAGCCCTGTTCATGGGGACGCTCTGGTCCCTGCAGAGTCGAGAAATAATGAACAAGCAGTAGCAACAGATTGTGCGCCGTCGAATTTGGCTTGGGTTTCGAGTTTTCTTTCGGAGAACGAGTCGATGATCATAGATGACGACATTCTGTTCGATCTGCCCAATTTTCTGTGCAATATGGCAGAAGGTCTATTGGTAGCCCCGCCATGGCTTCTTGAACAAGAAGATTTATATGGTAATAATTATTATGCAGCTGATAATGTGTATGAAGGAAATGGAGTTATGTCTCTCTGGAACTAG___TCATGGAAGAATCCTTCATGAGTTTCAATTGCAATAATATACTGTACATGTGAGATCGATCAGTTGCCATAAATGTATATGTGAGTTTATATTGTAAAATGTGATTTTATATTGTG

Fln Alignment:

Contig7178___MQSRSRKRRAAEINNADDSGEEESAVCNGDKQGG-RGKGNRHPVYRGVRMRTWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALSIKGKSAFLNFPNLVASLPRPVTLSPKDIQXXXXXXXXEFQIP--KDLSKDRSLDLAEMSSVSPVHGDALVPAESRNNEQAVATDCAPSNLAWVSSFLSENESMIIDDDILFDLPNFLCNMAEGLLVAPPWLLEQEDLYGNNYYAADNVYEGNGVM----SLWN
B8LM17______________MQNRSDKRSGAEISNADDSGEGETAACSEDKQRGLRVKGNPHPVYRGVRMRTWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTLKGESAILNFPHLASSLPRPATLSTRDIQEAAAAAAAAFHTPSEEDHNEDRSLDPA-VTNTEAVH------PESNINEKAAAAAACVSNSAWISSFLSENESTIIDDDILFDLPNFLGNMAEALLVAPPWFLEQEELYGNT-YAADHFYDGNGSIYAETSLWN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
526	66			33	0.997452
529	66		33		0.997452
530	66		33		0.997452
1143		88		11	0.923564
1161			88	11	0.923564
1190	87		12		0.992554
1256		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain