SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7112

Length: 2196 nt

UniGene Fasta

>sp_v3.0_unigene7112
CGTCGTGACCTTGGCTGTCATGTTGGGCATCGATCGCAGAAGATAGCAGAGCAAAGCGAAACAATACAGAGTAAATGGCCCTTCTTAGTTACGGCTGCCCTCCCAGCACCACCTGGAGAGTCCTAGAACAGCCTTGGCATTCAGGGGGCAACAGTCATAGACATGAACTCAAATGCAAACCGCTCATTTACGTCTCTTCTTGGAGGAGGGCAAGGGGGCTACCGATGGCAGATACTGCCCACTGTTCAATAACCACAACGAGGCATTCTGTTACTGTCAAAGCTTCTTCTTCCACTTCTTCATCATCGTCTTCAGCTATTGCAGATTCTGAGGGCTTCCAGGTGACAGCAGTACCGACTAAGCCGGTAGAAGGTCAAAAGACTGGAACAAGTGGGCTGCGGAAGAAAGTTAAAGTTTTTATGCAATCAAACTATTTATCAAACTGGATTCAGGCTCTGTTTAACTCACTACCACCTGAAGACTACAAAGGCGGGTTGTTGGTCCTAGGTGGAGATGGACGCTATTTCAACAAGGAAGCTGCTCAGATCATCATAAAAATAGCAGCAGGCAATGGAGTAGGAAAAATTCTTGTTGGCAGGGATGGACTAATGTCAACACCTGCAGTGTCTGCAGTTATTCGAAAACATAAGGCTAATGGGGGTTTTATTATGAGTGCAAGCCACAATCCTGGAGGACCAGAAAATGACTGGGGTATCAAGTTTAATTATGGCAGTGGACAGCCTGCACCTGAATCTATCACTGACAAGATATATGGCAACACTCTGTCTATTTCAGAAATCAAGATGGCAAACATTTCAGATGTGGATTTGTCTAGATTGGGAGTTACCAAGTTTGGCAGTTTTACTGTAGAAGTTGTTGATCCTGTTTCTGATTATAGGGAGCTACTACAGAGTGTCTTTGATTTTGAACTTATAAAGACCTTCATAACACGGCCAGATTTCAGGTTCAAATTCGATGCTATGCATGCCATAACTGGTGCCTATGCAAAGCCTATCTTTGTGGATCAACTTGGAGCAAATGCAGATTCTATATCCAATGGAATTCCTTTAGAGGATTTTGGGAATGGACATCCAGACCCCAACCTAACGTATGCTAAGGAGTTGGTAACTATTATGTATAGTGTAGACGCACCAGATTTTGGAGCTGCTAGTGATGGAGATGGTGACCGAAACATGATTCTTGGAAAAAGCTTCTTTGTTACACCTTCAGATTCAGTAGCTATGATTGCAGCTAATGCTCAAGAAACAATTCCATACTTCAAGAATGGACCAAAGGGTCTGGCAAGGTCCATGCCAACAAGCGGTGCCCTTGACCTTGTAGCAAAGAAACTAAACCTTCCATTTTTTGAGGTCCCCACTGGTTGGAAATTCTTTGGCAATCTCATGGATGCAGGGAAACTTTCAATATGTGGGGAAGAAAGCTTTGGAACTGGTTCTGATCACATTCGTGAGAAAGATGGAATCTGGGCTGTATTAGCTTGGCTTTCAATTATCGCTTATAAAAATAAAGATAAAAAAGTTGGTGAAAAGCTGGTATCTGTCGCAGATATTGCTAAAGAACATTGGGCAACCTATGGCCGTAACTTCTTTTCTCGTTATGATTATGAGGAATGTGAATTAGAAGGAGCCAACAAAATGGTTGAACATCTACGTGGTTTGATTTCTAACATCAAAGGAGGAGAGATGTATGGAAACTACATGATCCAGTTTGCAGACGATTTTGCATATACTGATCCAGTTGATGGAAGTGTAGCCTTAAAACAAGGAATTCGCTTCGTTTTCACAGATGGATCTAGGATTATATTTCGCTTATCAGGCACAGGTTCAGCTGGCGCGACAATTAGACTTTATGTGGAACAATATGAGCCAGATGTTTCTAAACAAGAAGTGGATGCACAAACAGCATTGAAGCCTTTAATTGATGTTGCTTTGTCAATATCAAAGCTTAAGGAGTACACTGGACGTGAAAAACCCACAGTCATTACATGAACCAACATAATGTGTTTGAGTTATATTCCAAAGGATTAAAATTTTGTCATTATTATTTCCAGTGCAGGATGAGGGCCTTGGTGGCAATAGTGGCTGAATTATACTGAATTATATGCATGAGTTATAATGAATTATGTGTATCTGGGCAATGACTGAATTGATAAATAAAATATTTTTACTTATTACT

Ace file of the UniGene sp_v3.0_unigene7112

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Phosphoglucomutase, chloroplastic; Short=PGM; AltName: Full=Glucose phosphomutase; Flags: Precursor emb\|CAB60128.1\| plastidial phosphoglucomutase [Pisum sativum]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	IPR005846	-	-
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Alpha-D-phosphohexomutase superfamily	IPR005841	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51820.1	PGM, ATPGMP, PGM1, STF1 phosphoglucomutase chr5:21063531-21067933 REVERSE LENGTH=623	80%
RefSeq	Arabidopsis thaliana	NP_199995.1	phosphoglucomutase [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002322433.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXL7

Fln msg:

Fln protein: MALLSYGCPPSTTWRVLEQPWHSGGNSHRHELKCKPLIYVSSWRRARGLPMADTAHCSITTTRHSVTVKASSSTSSSSSSAIADSEGFQVTAVPTKPVEGQKTGTSGLRKKVKVFMQSNYLSNWIQALFNSLPPEDYKGGLLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGRDGLMSTPAVSAVIRKHKANGGFIMSASHNPGGPENDWGIKFNYGSGQPAPESITDKIYGNTLSISEIKMANISDVDLSRLGVTKFGSFTVEVVDPVSDYRELLQSVFDFELIKTFITRPDFRFKFDAMHAITGAYAKPIFVDQLGANADSISNGIPLEDFGNGHPDPNLTYAKELVTIMYSVDAPDFGAASDGDGDRNMILGKSFFVTPSDSVAMIAANAQETIPYFKNGPKGLARSMPTSGALDLVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYKNKDKKVGEKLVSVADIAKEHWATYGRNFFSRYDYEECELEGANKMVEHLRGLISNIKGGEMYGNYMIQFADDFAYTDPVDGSVALKQGIRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKQEVDAQTALKPLIDVALSISKLKEYTGREKPTVIT*

Protein Length: 646

Fln nts: CGTCGTGACCTTGGCTGTCATGTTGGGCATCGATCGCAGAAGATAGCAGAGCAAAGCGAAACAATACAGAGTAA_-_ATGGCCCTTCTTAGTTACGGCTGCCCTCCCAGCACCACCTGGAGAGTCCTAGAACAGCCTTGGCATTCAGGGGGCAACAGTCATAGACATGAACTCAAATGCAAACCGCTCATTTACGTCTCTTCTTGGAGGAGGGCAAGGGGGCTACCGATGGCAGATACTGCCCACTGTTCAATAACCACAACGAGGCATTCTGTTACTGTCAAAGCTTCTTCTTCCACTTCTTCATCATCGTCTTCAGCTATTGCAGATTCTGAGGGCTTCCAGGTGACAGCAGTACCGACTAAGCCGGTAGAAGGTCAAAAGACTGGAACAAGTGGGCTGCGGAAGAAAGTTAAAGTTTTTATGCAATCAAACTATTTATCAAACTGGATTCAGGCTCTGTTTAACTCACTACCACCTGAAGACTACAAAGGCGGGTTGTTGGTCCTAGGTGGAGATGGACGCTATTTCAACAAGGAAGCTGCTCAGATCATCATAAAAATAGCAGCAGGCAATGGAGTAGGAAAAATTCTTGTTGGCAGGGATGGACTAATGTCAACACCTGCAGTGTCTGCAGTTATTCGAAAACATAAGGCTAATGGGGGTTTTATTATGAGTGCAAGCCACAATCCTGGAGGACCAGAAAATGACTGGGGTATCAAGTTTAATTATGGCAGTGGACAGCCTGCACCTGAATCTATCACTGACAAGATATATGGCAACACTCTGTCTATTTCAGAAATCAAGATGGCAAACATTTCAGATGTGGATTTGTCTAGATTGGGAGTTACCAAGTTTGGCAGTTTTACTGTAGAAGTTGTTGATCCTGTTTCTGATTATAGGGAGCTACTACAGAGTGTCTTTGATTTTGAACTTATAAAGACCTTCATAACACGGCCAGATTTCAGGTTCAAATTCGATGCTATGCATGCCATAACTGGTGCCTATGCAAAGCCTATCTTTGTGGATCAACTTGGAGCAAATGCAGATTCTATATCCAATGGAATTCCTTTAGAGGATTTTGGGAATGGACATCCAGACCCCAACCTAACGTATGCTAAGGAGTTGGTAACTATTATGTATAGTGTAGACGCACCAGATTTTGGAGCTGCTAGTGATGGAGATGGTGACCGAAACATGATTCTTGGAAAAAGCTTCTTTGTTACACCTTCAGATTCAGTAGCTATGATTGCAGCTAATGCTCAAGAAACAATTCCATACTTCAAGAATGGACCAAAGGGTCTGGCAAGGTCCATGCCAACAAGCGGTGCCCTTGACCTTGTAGCAAAGAAACTAAACCTTCCATTTTTTGAGGTCCCCACTGGTTGGAAATTCTTTGGCAATCTCATGGATGCAGGGAAACTTTCAATATGTGGGGAAGAAAGCTTTGGAACTGGTTCTGATCACATTCGTGAGAAAGATGGAATCTGGGCTGTATTAGCTTGGCTTTCAATTATCGCTTATAAAAATAAAGATAAAAAAGTTGGTGAAAAGCTGGTATCTGTCGCAGATATTGCTAAAGAACATTGGGCAACCTATGGCCGTAACTTCTTTTCTCGTTATGATTATGAGGAATGTGAATTAGAAGGAGCCAACAAAATGGTTGAACATCTACGTGGTTTGATTTCTAACATCAAAGGAGGAGAGATGTATGGAAACTACATGATCCAGTTTGCAGACGATTTTGCATATACTGATCCAGTTGATGGAAGTGTAGCCTTAAAACAAGGAATTCGCTTCGTTTTCACAGATGGATCTAGGATTATATTTCGCTTATCAGGCACAGGTTCAGCTGGCGCGACAATTAGACTTTATGTGGAACAATATGAGCCAGATGTTTCTAAACAAGAAGTGGATGCACAAACAGCATTGAAGCCTTTAATTGATGTTGCTTTGTCAATATCAAAGCTTAAGGAGTACACTGGACGTGAAAAACCCACAGTCATTACATGA___ACCAACATAATGTGTTTGAGTTATATTCCAAAGGATTAAAATTTTGTCATTATTATTTCCAGTGCAGGATGAGGGCCTTGGTGGCAATAGTGGCTGAATTATACTGAATTATATGCATGAGTTATAATGAATTATGTGTATCTGGGCAATGACTGAATTGATAAATAAAATATTTTTACTTATTACT

Fln Alignment:

Contig7112___MALLSYGCPPSTTWRVLEQPWHSGGNSHRHELKCKPLIYVSSWRRARGLPMADTAHCSITTTRHXXXXXXXXXXXXXXXXX-IADSEGFQVTAVPTKPVEGQKTGTSGLRKKVKVFMQSNYLSNWIQALFNSLPPEDYKGGLLVLGGDGRYFNKEXXXXXXXXXXGNGVGKILVGRDGLMSTPAVSAVIRKHKANGGFIMSASHNPGGPENDWGIKFNYGSGQPAPESITDKIYGNTLSISEIKMANISDVDLSRLGVTKFGSFTVEVVDPVSDYRELLQSVFDFELIKTFITRPDFRFKFDAMHAITGAYAKPIFVDQLGANADSISNGIPLEDFGNGHPDPNLTYAKELVTIMYSVDAPDFGAASDGDGDRNMILGKSFFVTPSDSVAMIAANAQETIPYFKNGPKGLARSMPTSGALDLVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYKNKDKKVGEKLVSVADIAKEHWATYGRNFFSRYDYEECELEGANKMVEHLRGLISNIKGGEMYGNYMIQFADDFAYTDPVDGSVALKQGIRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKQEVDAQTALKPLIDVALSISKLKEYTGREKPTVIT
A9NXL7______________MALLRYGCPTSTTWRLLEQPWHPGCSSHGHELKCKPPIYVSSRRRARGLLITDTASCSITTRRHSVTVKASSTSSSPSSSSAIADSEGFQVTAIPTKPVEGQKTGTSGLRKKVKVFMQSNYLANWIQALFNSLPPEDYKGGLLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGRDGLMSTPSVSAVIRKHKANGGFIMSASHNPGGPENDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKMADISDVDLSRLGVTKFGSFTVEVVDPVSDYMELLESVFDFELIRTFITRPDFRFKFDAMHAITGAYAKPIFVDQLGANADSISNGIPLEDFGNGHPDPNLTYAEELVNIMYSVDAPDFGAASDGDGDRNMILGKSFFVTPSDSVAMIAANAQETIPYFKNGPKGLARSMPTSGALDLVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYKNKDKKVGEKLVSVADIAKEHWATYGRNFFSRYDYEECELEGANKMVEHLRGLISNIKAGEEYGNYTIQFADDFAYTDPVDGSVVFKQGVRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKHDMDAQTALKPLIDVALSISKLKEYTGREKPTVIT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2194		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain