SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7110

Length: 2045 nt

UniGene Fasta

>sp_v3.0_unigene7110
TCAATCTCTTTCCTGAGGGATTCTGCAAGATTACCACACTCGTTTTATTATCGGAGAGATTAACTAACGCTCGTTTCAGTGTACCTCTCCGACAACAAAATCCAAGCTGTTACGGATTCAATTGCTGGTCTTGTAAACCTGGAAACACTGGATTTGAGTGGCAACGTCCTGGTCTCTCTGCCAGATTCACTTGGACTTCTGAAAAGATTAAAATTCTTGAATGTTTCAGGAAATAAACTAAAATGTTTACCAGATAGCATTTCAATGTGCAGTGAGTTGATTGAGCTGGATGCCAGCTACAACCAGTTGATCTATTTGCCAACCAACTTCGGTTATCAGCTTGCCAACCTCCAGAAACTATTGGTTCAATTAAACAAGTTAAGGTCTTTGCCGTCTTCTTTCTGTGAACTGAAATCTCTAAGGTACTTGGACGTTCATTTCAATGAGCTACGATCTTTACCAGATGCCCTTGGAGACTTGAAAAATCTTGAGGTCCTGAATGCTAGCAGCAACTTCAGTGATTTAGTAAGTTTACCAGAATCAATTGGTGAATTAACAAACCTTGTTGAGTTGGATGTCAGCAACAATCAAATCAAGGAACTGCCATATTCATTTGGAAGTTTACAGAATTTGAAGAAGCTCAACCTGGATCAAAACCCCCTCATGACACCACCAAATGAGATTGTTGTACAGGGTGTGGAGGCTGTAAAGGAGTACATGGCCAAAAGATGGTTGGATTATTTGCTGGAAGAGGAACAAAAAAGCATGTCAGCCACTAGCAATAATCAAACAAATAATGGTTGGGTGCAATGGGGCGGTTCTGTGCTTGGAGGTTTGATTTCAGGAACGAAGGAAAGCATCAGAGGATATCTAGGGGCACCAAACAAACGTCAACTGGATCCTTACCTGGAACAGCAGTACTGAATTACTTGCCCATTAACACTTTTAATAGTTTTTATACCATGCAACTTTGCATATTAACTAGTTCTTTCTTTCTCACAGTTCTACTGTTGAGAAGACAGGAGGATAGAATCGTTTTGGGATCTACTCAATTCACCAATGTGTTTGCATCTGATTTCCAGAGTGAGGTAGAATTAACTTGTGGTGCTTGATATAGCATGCAGCTTGAATTCAGAATTTACATTTGCTCATGCAAGCAGACAAAAATGATCTTTGGGTGTTCTAGGCCATGCACATGTATACTGAAACAATATATGTATGCATTGCGAGGAAGTAGTAGGATATGATGCCCAATGACTACCCAGTCAATGCATGCACAATAGGTCTAATGACCGCCTGAATCTCCTGCCATTAACTTGTGCTTGGGTTAGCCTTGTCAACGATTAATAAGGAGTGCTGATTGACAGTTTGATCTTCAATGGGGATCTAAGGCGTCCATGATCTTAAAAATTGTTCATATTTGGTTAAAGTTGCAGGTCAAGTGAGTGTAGGATCAATGAATCGTGCTTTTGGGCAGCTAATGTTGAATATTTTGAATTAGGTTTTTTGAGAAAACGGGTTAGTAGTAGAGATAAATAGGGAAAACCAAAATTAGGGTCTTTGCAATGACTTTCACCTAATTGAGTTATATTTGATTCAGGAGCTTTGTAGTTGGAATAATTTTCCTGCAGTCTTTATTATTCTACTCAAGAAATCTTCACAAACAATGGTAATGCGAAAGCATTGATCTACCTCTTGGGAGGAACACGCAATCGCTGCGTTCATCTTTATCATTCTCTGGAACCGTTGTATTAGAACAGTGCTCTAGCTTATGGAAGCAGTTTGGTTTCTAAGCACAACTGTTTCTTTCTGTGAGAGGATAACTGCAACATCAGTTTTTCAGTCGGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTATTATGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTACTATGTTGCAGAAATAATCAAAGCAATGTAAAGGTGTTCTGGACCTAATAATTCTCTTGTGGGATTTTATCTTTTGACTCGTTATACAAGTCAGACC

Ace file of the UniGene sp_v3.0_unigene7110

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SVK7_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Leucine-rich repeat-containing protein, putative	-	-	1.099e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	4.914e-06	-

Source	Gene names
Sma3	AT4g26050; AT4g35470; At1g12970; At1g69550; At2g17440; At2g19330; At3g11330; At3g26500; At3g26500/MFE16_1; At4g26050; At4g29880; At4g35470; At4g35470/F15J1.40; At5g05850; F10D13_24; F11B9.22; F13K23.23; F20B18.160; GSVIVT00015791001; GSVIVT00015986001; GS

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05850.1	PIRL1 plant intracellular ras group-related LRR 1 chr5:1762691-1764609 REVERSE LENGTH=506	56%
RefSeq	Arabidopsis thaliana	NP_196204.1	plant intracellular ras group-related LRR 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002321633.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 308 - 524

Fln protein: SISFLRDSARLPHSFYYRRD*LTLVSVYLSDNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSLGLLKRLKFLNVSGNKLKCLPDSISMCSELIELDASYNQLIYLPTNFGYQLANLQKLLVQLNKLRSLPSSFCELKSLRYLDVHFNELRSLPDALGDLKNLEVLNASSNFSDLVSLPESIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEYMAKRWLDYLLEEEQKSMSATSNNQTNNGWVQWGGSVLGGLISGTKESIRGYLGAPNKRQLDPYLEQQY*

Protein Length: 309

Fln nts: TCAATCTCTTTCCTGAGGGATTCTGCAAGATTACCACACTCGTTTTATTATCGGAGAGATTAACTAACGCTCGTTTCAGTGTACCTCTCCGACAACAAAATCCAAGCTGTTACGGATTCAATTGCTGGTCTTGTAAACCTGGAAACACTGGATTTGAGTGGCAACGTCCTGGTCTCTCTGCCAGATTCACTTGGACTTCTGAAAAGATTAAAATTCTTGAATGTTTCAGGAAATAAACTAAAATGTTTACCAGATAGCATTTCAATGTGCAGTGAGTTGATTGAGCTGGATGCCAGCTACAACCAGTTGATCTATTTGCCAACCAACTTCGGTTATCAGCTTGCCAACCTCCAGAAACTATTGGTTCAATTAAACAAGTTAAGGTCTTTGCCGTCTTCTTTCTGTGAACTGAAATCTCTAAGGTACTTGGACGTTCATTTCAATGAGCTACGATCTTTACCAGATGCCCTTGGAGACTTGAAAAATCTTGAGGTCCTGAATGCTAGCAGCAACTTCAGTGATTTAGTAAGTTTACCAGAATCAATTGGTGAATTAACAAACCTTGTTGAGTTGGATGTCAGCAACAATCAAATCAAGGAACTGCCATATTCATTTGGAAGTTTACAGAATTTGAAGAAGCTCAACCTGGATCAAAACCCCCTCATGACACCACCAAATGAGATTGTTGTACAGGGTGTGGAGGCTGTAAAGGAGTACATGGCCAAAAGATGGTTGGATTATTTGCTGGAAGAGGAACAAAAAAGCATGTCAGCCACTAGCAATAATCAAACAAATAATGGTTGGGTGCAATGGGGCGGTTCTGTGCTTGGAGGTTTGATTTCAGGAACGAAGGAAAGCATCAGAGGATATCTAGGGGCACCAAACAAACGTCAACTGGATCCTTACCTGGAACAGCAGTACTGA___ATTACTTGCCCATTAACACTTTTAATAGTTTTTATACCATGCAACTTTGCATATTAACTAGTTCTTTCTTTCTCACAGTTCTACTGTTGAGAAGACAGGAGGATAGAATCGTTTTGGGATCTACTCAATTCACCAATGTGTTTGCATCTGATTTCCAGAGTGAGGTAGAATTAACTTGTGGTGCTTGATATAGCATGCAGCTTGAATTCAGAATTTACATTTGCTCATGCAAGCAGACAAAAATGATCTTTGGGTGTTCTAGGCCATGCACATGTATACTGAAACAATATATGTATGCATTGCGAGGAAGTAGTAGGATATGATGCCCAATGACTACCCAGTCAATGCATGCACAATAGGTCTAATGACCGCCTGAATCTCCTGCCATTAACTTGTGCTTGGGTTAGCCTTGTCAACGATTAATAAGGAGTGCTGATTGACAGTTTGATCTTCAATGGGGATCTAAGGCGTCCATGATCTTAAAAATTGTTCATATTTGGTTAAAGTTGCAGGTCAAGTGAGTGTAGGATCAATGAATCGTGCTTTTGGGCAGCTAATGTTGAATATTTTGAATTAGGTTTTTTGAGAAAACGGGTTAGTAGTAGAGATAAATAGGGAAAACCAAAATTAGGGTCTTTGCAATGACTTTCACCTAATTGAGTTATATTTGATTCAGGAGCTTTGTAGTTGGAATAATTTTCCTGCAGTCTTTATTATTCTACTCAAGAAATCTTCACAAACAATGGTAATGCGAAAGCATTGATCTACCTCTTGGGAGGAACACGCAATCGCTGCGTTCATCTTTATCATTCTCTGGAACCGTTGTATTAGAACAGTGCTCTAGCTTATGGAAGCAGTTTGGTTTCTAAGCACAACTGTTTCTTTCTGTGAGAGGATAACTGCAACATCAGTTTTTCAGTCGGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTATTATGTTGTAGATACTAATTCAGCAGGTATAGTGGAATTATGAACGTTTTGTACTATGTTGCAGAAATAATCAAAGCAATGTAAAGGTGTTCTGGACCTAATAATTCTCTTGTGGGATTTTATCTTTTGACTCGTTATACAAGTCAGACC

Fln Alignment:

Contig7110___TLVSVYLSDNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSLGLLKRLKFLNVSGNKLKCLPDSISMCSELIELDASYNQLIYLPTNFGYXXXXXXXXXXXXXXXRSLPSSFCELKSLRYLDVHFNELRSLPDALGDLKNLEVLNASSNFSDLVSLPESIGELTNLVELDVSNNQIKELPYSFGSXXXXXXXXXXXXXXMTPPNEIVVQGVEAVKEYMAKRWLDYLLEEEQKSMSATS--NNQTNNGWVQWGGSVLGGLISGTKESIRGYLGAPNKRQLDPYLEQQY
B8LQU6______________TLVLVNLSRNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSIGLLKRLKFLNISGNKLKSLPDSISMCSELIELDASYNQLTYLPTNFGYQLANLQKLLVQLNKLRSLPSSVCELKSLRYLDVHFNELRSLPEALGDLKNLEVLNASSNFSDLVSLPDSIGELTNLVELDVSNNQIKELPYSFGSLQNLKKLNLDQNPLMTPPNEIVVQGVEAVKEHMAKRWLDYLLEEEQKYMSANSNTNNQTNNGWVQWGSSVFGGLISGTKESIRGYLGASKKPHMESYLEQQY

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
259	20	80			0.995493
262			12	87	0.992554
347	88		11		0.923564
374	88	11			0.923564
376		90		10	0.90298
377	90			10	0.90298
476	12		87		0.992554
709	33		66		0.997452
733	25		75		0.996473
735			25	75	0.996473
754	25		75		0.996473
1036	12		87		0.992554
1037		12		87	0.992554
1038	12			87	0.992554
1127		10		90	0.90298
1195	90		10		0.90298
1523	90		10		0.90298
1912	12			87	0.992554
1913	87	12			0.992554
1923	14		85		0.993533
1988		50		50	1.0
1991			62	37	1.0
1994		33		66	1.0
1998	33			66	0.997452
2001			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain