SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7104

Length: 1599 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7104 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative arogenate dehydratase n=1 Tax=Capsicum annuum RepID=B5LAT0_CAPAN	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08250.1	ADT6 arogenate dehydratase 6 chr1:2588994-2590235 REVERSE LENGTH=413	71%
RefSeq	Arabidopsis thaliana	NP_563809.1	arogenate dehydratase 6 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002328073.1	arogenate/prephenate dehydratase [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ13

Fln msg:

Fln protein: MYSKMVAGARCIALKVDTLHSETLRYKSSLCRYNVSSSMLRAGACNRRHVSVFAKHEANTRNGISSSNSNGDVPMDSRLKVCEWQSSCAILNSQLQLRAKEAEAGPDSKALVRSDSAESDRSAGSKDMMALPRPLSIVDLEPSPKHGSQLRVAYQGVPGAYSEAAAGKAYPGCEPIPCDQFEAAFQAVELWVADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMTLPGTRKEDVRRVISHPQALAQCEHTISKLIGLKVIREGVDDTAGAAQMVAENYLRDTAAIASSRAAEIYGMNIIADGIQDDASNVTRFVILAREPIIPRVDRPFKTSIVFAQDEGTGILFKVLAAFAFRDISLTKIESRPQRNRPLRVVDDSNLGTAKYFEYLFYIDFEASMADPRAQNALAELQEFTNFLRVLGSYPMDISPPIDSLDSS*

Protein Length: 449

Fln nts: A_-_ATGTATTCCAAGATGGTAGCCGGAGCCAGATGCATAGCATTGAAGGTCGATACCCTTCACAGCGAGACGCTGAGGTACAAATCTTCTCTCTGTAGATACAATGTTTCTTCGTCGATGCTTAGGGCCGGCGCCTGCAACAGGCGCCATGTTTCTGTATTTGCAAAACACGAAGCCAACACTAGAAATGGCATTAGTAGTAGTAATAGTAATGGTGATGTACCTATGGATTCCCGCCTGAAAGTCTGCGAATGGCAGAGCTCCTGTGCTATTCTGAATAGCCAGCTGCAGCTCCGGGCGAAGGAAGCCGAAGCGGGGCCGGACTCGAAGGCGCTGGTTCGTTCAGACAGTGCCGAGTCTGATCGTTCCGCGGGTTCCAAAGATATGATGGCGCTGCCCCGGCCGCTCTCGATAGTGGATCTGGAACCGTCGCCGAAGCACGGATCGCAACTTCGGGTGGCGTACCAGGGCGTCCCGGGCGCGTACAGCGAGGCGGCGGCGGGGAAGGCGTACCCGGGTTGTGAGCCCATACCGTGCGACCAATTCGAGGCGGCGTTTCAGGCGGTGGAGCTCTGGGTTGCGGACCGGGCGGTGCTGCCGGTGGAGAATTCACTTGGTGGCAGCATCCACCGCAACTATGATCTGCTCCTCCGCCACCGGCTTCATATTGTGGGCGAGGTGCAGCTGCCCGTGCACCACTGCCTGATGACGCTCCCGGGCACGAGGAAGGAGGATGTGCGGCGCGTGATCAGTCACCCGCAGGCCCTTGCCCAGTGCGAGCACACGATTTCGAAGCTCATCGGCCTCAAGGTCATCCGCGAGGGCGTGGACGACACCGCCGGCGCCGCCCAGATGGTGGCGGAGAATTATCTCCGCGACACGGCCGCCATTGCCAGCTCCCGGGCGGCCGAAATCTACGGCATGAATATCATCGCCGACGGAATCCAAGACGACGCTAGCAACGTCACCCGCTTTGTGATCCTCGCCCGGGAACCAATCATTCCCCGGGTGGACCGCCCATTCAAAACCAGCATAGTCTTCGCACAAGACGAGGGGACTGGAATTCTCTTCAAAGTCCTCGCCGCCTTCGCTTTCCGGGACATTAGCCTCACAAAAATCGAGAGCAGGCCGCAGAGAAACCGCCCACTCCGTGTCGTAGACGATTCCAACTTGGGAACCGCCAAGTACTTCGAGTATCTCTTCTACATCGATTTCGAGGCATCCATGGCGGATCCCAGAGCTCAGAATGCTCTGGCGGAGCTGCAGGAGTTTACTAATTTTCTCAGGGTGCTGGGGAGTTACCCCATGGACATAAGTCCCCCAATCGATTCCCTTGATTCTTCTTAA___ATTACCATTCTTATTTGTAAAGAATTCGGTGAAAATAAGAGACTGGGATTAACTGTTGGGAATTTTATATACATGATATTTATATACTGTCAATGAAATTATGATTGCCTTATTGTTACATCCATGATCAGTGCTGCTGAAGAGCAGCTACTGGTCATATACATTATGTTTCTGTATAAGCCTTTGAAAGGCCGAGCTTTGCCTTTCGAATTAATGAACTATGTGGTTTTCTTTCCTCAGGGTTTCGGGGATTA

Fln Alignment:

Contig7104___MVAGARCIALKVDTLHSETLRYKSSLCRYNVSSSMLRAGACNRRHVSVFAKHEANTRNGISSSNSNGDVPMDSRLKVCEWQSSCAILNSQLQLRAKEAEAGPDSKALVRSDSAESDRSAGSKDMMALPRPLSIVDLEPSPKHGSQLRVAYQGVPGAYSEAAAGKAYPGCEPIPCDQFEAAFQAVELWVADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMTLPGTRKEDVRRVISHPQALAQCEHTISKLIGLKVIREGVDDTAGAAQMVAENYLRDTAAIASSRAAEIYGMNIIADGIQDDASNVTRFVILAREPIIPRVDRPFKTSIVFAQDEGTGILFKVLAAFAFRDISLTKIESRPQRNRPLRVVDDSNLGTAKYFEYLFYIDFEASMADPRAQNALAELQEFTNFLRVLGSYPM
C0PQ13______________MVAGARCIALKVDTLHSEKLRYKSSLCRYNISSSILRTAACNRRHVSVFAKYEANNRNGISSSNSNGDAPMEARLKVCEWQSSCAILNSQLQLRAKEAEAGPDSKALVRSDSAESDHSVCSKDVLQLPRPLSITDYSAFPKHGSQLRVAYQGVPGAYSEAAAGKAYPGCEPVPCDQFEAAFQAVELWVADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLRVHHCLMALPGTRKEDLRRVISHPQALAQCEHTISKLVGLKVIREGVDDTAGAAQMVAENDLRDTAAIASSRAAEIYGMDIIADGIQDDASNVTRFLILAREPIIPGVDRPFKTSIVFAQNEGTGILFKVLAAFAFRDISLTKIESRPQRNRPLRVVDDSNLGTAKYFEYLFYIDFEASLADPRAQNALAELQEFTNYLRVLGSYPM

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
267	80		20		0.995493
984	50		50		1.0
1014		50		50	1.0
1198	25		75		0.996473
1223	16			83	0.994512
1243			80	20	0.995493
1244	80			20	0.995493
1246	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain