SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7085

Length: 2099 nt

UniGene Fasta

>sp_v3.0_unigene7085
GCCCAGTGCATGTATGCAAATAGATTGAGATAATATTATCATATTTGGACATATTTCCACCTCAGCGGAATTGCTTTGAATTGCCCATCTGCCATTAAATTTAGAGAAGCTCGTTGCAGTCATCACTACACAGCAATGGCGGAAGAGTCTCTGAGATATCCTCTATTAGAGGACGCAGGGAGAGACAGACAATGGATTCAGAGCAGGCAGAATGATCTTTCTCTGGATGCCCACTCAATCTTGGATCCCAAAGTTCTGGCTAGAGAGAGCTGGATCGAATCCAAGAAACTGTGGTATATTGGAGGTCCTGCAATTTTCACTGCTATATGTCAGTATTCGCTGGGAGCCATCACCCAGACCTTCGCTGGGCATTTGGGCACCATAGAGCTCGCTGCAGTGGCCATCGAGAACTCCGTTATAGCAGGGCTGGCCTTCGGAACCATGCTTGGTATGGGCAGTGCATTGGAGACACTCTGCGGTCAGGCCTTTGGAGCAGGGCAGATACACATGCTGGGAGTGTATATGCAGAGGTCATGGATTATACTTAATGTGACAGCATTGGTTTTAAGTCTGGTTTATATTTTTGCACCACCGATATTGAAGCTCTTTGGACAAACTGACGAGATTTCCGCCTTGGCTGGGAAGTTTGCCATCTGGATGCTTCCTCAGCTATTTGCTTATGCGATGAATTTTCCCATTCAGAAGTTCCTCCAGTCTCAAAGCAAGGTCATGGCCATGGCTTGGATCTCTGCATTGGGATTAGTTTTACACATTTTCTTGAGCTGGCTGTGTATAATAAAATTGGGATGGGGATTGCCAGGAGCGGCCATAACTCTCAATCTCTCATGGTGGGTAGTTGTATTGGGGCAGCTTGCGTATATATTGTCAGGCACCTGTCCTGGTGCATGGACTGGATTGTCATGTTCGGCGTTTCGAGATTTGGCTGCCTTTGTCAGGCTTTCCTTGGCTTCTGCTGTTATGCTATGCCTTGAGTTCTGGTATCTGATGATATTGATCGTTTTGACTGGGCACCTGAAAAACCCAGAAATTGAATTAGACTCTATCTCTATTTGCATGAATTTGAATGGATGGGAAGTGATGATAGCCCTTGGATTCAATGTTGCTATCAGTGTGAGAGTATCAAATGAACTGGGAGCTGGACATCCAAACGCTGCAAAGTTCTCAGTAGTGGTCGTGACTTTGATGTCCCTATTGATAGGCATCGTGTTTATGATTCTTATTTTTGTCACCAAAAATGATTTCCCAGTGCTTTTTACAAATAGCCAAGAGGTTATGCATGCAGTAACCAAGCTAGCAACCTTGCTGGCACTGACAATGATTCTCAATAGCGTGCAGCCGGTTCTATCAGGAGTGGCGGTCGGAGCAGGATGGCAAGCTTTGGTAGCATATGTAAATATAGGATGTTATTACGTTGTTGGGCTTCCACTTGGTATTCTACTGGGATACAAAATGAACTTTGGAGCCAAGGGTATTTGGAGCGGTATGATTGGAGGAACAGTTCTGCAAACCATAATTCTGATATTTATCACATATAGGACTGACTGGGACAAAGAGGCCTTAGAAGCTGGAGATCGGATTAAAACTTGGGGAGGTTCAGTAGATCCCATGAAAGAGGAATCAAAGAAGGACATCAAAGGAAGTGACAGAAAGAAGTTGCCTTCAAACATATGAAAATGAGATTGCCACACTGTTATTCTAAAGTAATGCATGTACTCTATTGCATCTACATCACTAGATTCAGCTGGCAAACGACATTTTTTAATAAAATTCAAGAAGCTGGTGAATTCATGGTGAATTCGATTATAGTGGCTTCTGCTTCAACTTATGATTGAAGAGTGAATCAGTTTGTTCAATTACCTGGACTTTTTTTCAATCCACCCCCTCATTCATTGTTCTATCGAATCAACATGTTCTCTTCTTTGCAGAGTTATGACTTTTCCAAGATGCCAGTTCACGTTATTCTATTTCCCCTGAAATCATATGAATTTCAGGTGATAACGAAAAGAGATGCTGTTCAAACAGCAAATTGTTCCTCGTGTCTATCTGGATTTAAATTGTAGGCCAGGCCATATTCAAAT

Ace file of the UniGene sp_v3.0_unigene7085

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9R7N6_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Sma3	Multidrug resistance pump, putative	-	-	-

Source	Gene names
Sma3	117M18_23; AT1G61890; AT4G21910; AT4g00350; AT4g21900; AT4g21910; AT4g25640; A_IG005I10.20; At1g11670; At1g12950; At1g33080; At1g33090; At1g33100; At1g33110; At1g47530; At1g61890; At3g21690; At3g26590; At3g59030; At4g00350; At4g21900; At4g21910; At4g25640

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	maintenance of seed dormancy	GO:0010231	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G47530.1	MATE efflux family protein chr1:17451724-17454110 FORWARD LENGTH=484	66%
RefSeq	Arabidopsis thaliana	NP_175184.1	MATE efflux family protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002311767.1	predicted protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg:

Fln protein: MAEESLRYPLLEDAGRDRQWIQSRQNDLSLDAHSILDPKVLARESWIESKKLWYIGGPAIFTAICQYSLGAITQTFAGHLGTIELAAVAIENSVIAGLAFGTMLGMGSALETLCGQAFGAGQIHMLGVYMQRSWIILNVTALVLSLVYIFAPPILKLFGQTDEISALAGKFAIWMLPQLFAYAMNFPIQKFLQSQSKVMAMAWISALGLVLHIFLSWLCIIKLGWGLPGAAITLNLSWWVVVLGQLAYILSGTCPGAWTGLSCSAFRDLAAFVRLSLASAVMLCLEFWYLMILIVLTGHLKNPEIELDSISICMNLNGWEVMIALGFNVAISVRVSNELGAGHPNAAKFSVVVVTLMSLLIGIVFMILIFVTKNDFPVLFTNSQEVMHAVTKLATLLALTMILNSVQPVLSGVAVGAGWQALVAYVNIGCYYVVGLPLGILLGYKMNFGAKGIWSGMIGGTVLQTIILIFITYRTDWDKEALEAGDRIKTWGGSVDPMKEESKKDIKGSDRKKLPSNI*

Protein Length: 520

Fln nts: GCCCAGTGCATGTATGCAAATAGATTGAGATAATATTATCATATTTGGACATATTTCCACCTCAGCGGAATTGCTTTGAATTGCCCATCTGCCATTAAATTTAGAGAAGCTCGTTGCAGTCATCACTACACAGCA_-_ATGGCGGAAGAGTCTCTGAGATATCCTCTATTAGAGGACGCAGGGAGAGACAGACAATGGATTCAGAGCAGGCAGAATGATCTTTCTCTGGATGCCCACTCAATCTTGGATCCCAAAGTTCTGGCTAGAGAGAGCTGGATCGAATCCAAGAAACTGTGGTATATTGGAGGTCCTGCAATTTTCACTGCTATATGTCAGTATTCGCTGGGAGCCATCACCCAGACCTTCGCTGGGCATTTGGGCACCATAGAGCTCGCTGCAGTGGCCATCGAGAACTCCGTTATAGCAGGGCTGGCCTTCGGAACCATGCTTGGTATGGGCAGTGCATTGGAGACACTCTGCGGTCAGGCCTTTGGAGCAGGGCAGATACACATGCTGGGAGTGTATATGCAGAGGTCATGGATTATACTTAATGTGACAGCATTGGTTTTAAGTCTGGTTTATATTTTTGCACCACCGATATTGAAGCTCTTTGGACAAACTGACGAGATTTCCGCCTTGGCTGGGAAGTTTGCCATCTGGATGCTTCCTCAGCTATTTGCTTATGCGATGAATTTTCCCATTCAGAAGTTCCTCCAGTCTCAAAGCAAGGTCATGGCCATGGCTTGGATCTCTGCATTGGGATTAGTTTTACACATTTTCTTGAGCTGGCTGTGTATAATAAAATTGGGATGGGGATTGCCAGGAGCGGCCATAACTCTCAATCTCTCATGGTGGGTAGTTGTATTGGGGCAGCTTGCGTATATATTGTCAGGCACCTGTCCTGGTGCATGGACTGGATTGTCATGTTCGGCGTTTCGAGATTTGGCTGCCTTTGTCAGGCTTTCCTTGGCTTCTGCTGTTATGCTATGCCTTGAGTTCTGGTATCTGATGATATTGATCGTTTTGACTGGGCACCTGAAAAACCCAGAAATTGAATTAGACTCTATCTCTATTTGCATGAATTTGAATGGATGGGAAGTGATGATAGCCCTTGGATTCAATGTTGCTATCAGTGTGAGAGTATCAAATGAACTGGGAGCTGGACATCCAAACGCTGCAAAGTTCTCAGTAGTGGTCGTGACTTTGATGTCCCTATTGATAGGCATCGTGTTTATGATTCTTATTTTTGTCACCAAAAATGATTTCCCAGTGCTTTTTACAAATAGCCAAGAGGTTATGCATGCAGTAACCAAGCTAGCAACCTTGCTGGCACTGACAATGATTCTCAATAGCGTGCAGCCGGTTCTATCAGGAGTGGCGGTCGGAGCAGGATGGCAAGCTTTGGTAGCATATGTAAATATAGGATGTTATTACGTTGTTGGGCTTCCACTTGGTATTCTACTGGGATACAAAATGAACTTTGGAGCCAAGGGTATTTGGAGCGGTATGATTGGAGGAACAGTTCTGCAAACCATAATTCTGATATTTATCACATATAGGACTGACTGGGACAAAGAGGCCTTAGAAGCTGGAGATCGGATTAAAACTTGGGGAGGTTCAGTAGATCCCATGAAAGAGGAATCAAAGAAGGACATCAAAGGAAGTGACAGAAAGAAGTTGCCTTCAAACATATGA___AAATGAGATTGCCACACTGTTATTCTAAAGTAATGCATGTACTCTATTGCATCTACATCACTAGATTCAGCTGGCAAACGACATTTTTTAATAAAATTCAAGAAGCTGGTGAATTCATGGTGAATTCGATTATAGTGGCTTCTGCTTCAACTTATGATTGAAGAGTGAATCAGTTTGTTCAATTACCTGGACTTTTTTTCAATCCACCCCCTCATTCATTGTTCTATCGAATCAACATGTTCTCTTCTTTGCAGAGTTATGACTTTTCCAAGATGCCAGTTCACGTTATTCTATTTCCCCTGAAATCATATGAATTTCAGGTGATAACGAAAAGAGATGCTGTTCAAACAGCAAATTGTTCCTCGTGTCTATCTGGATTTAAATTGTAGGCCAGGCCATATTCAAAT

Fln Alignment:

Contig7085___EESLRYPLL-----EDAGRDRQWIQSRQNDLSLDAHSILDPKVLARESWIESKKLWYIGGPAIFTAICQYSLGAITQTFAGHLGTIELAAVAIENSVIAGLAFGTMLGMGSALETLCGQAFGAGQIHMLGVYMQRSWIILNVTALVLSLVYIFAPPILKLFGQTDEISALAGKFAIWMLPQLFAYAMNFPIQKFLQSQSKVMAMAWISALGLVLHIFLSWLCIIKLGWGLPGAAITLNLSWWVVVLGQLAYILSGTCPGAWTGLSCSAFRDLAAFVRLSLASAVMLCLEFWYLMILIVLTGHLKNPEIELDSISICMNLNGWEVMIALGFNVAISVRVSNELGAGHPNAAKFSVVVVTLMSLLIGIVFMILIFVTKNDFPVLFTNSQEVMHAVTKXXXXXXXXMILNSVQPVLSGVAVGAGWQALVAYVNIGCYYVVGLPLGILLGYKMNFGAKGIWSGMIGGTVLQTIILIFITYRTDWDKEALEAGDRIKTWGGS
B8LKL5______________QDSFRSSLLPPVNEEESGKYGDDLPHRY-DFPDDRRPITDCRSLANGCWEESKKLWYLSGPAIFTSVCQYSLGALTQTFAGHIGELELAAVSIENSVIAGLSFGIMMGMGSALETLCGQSVGARRLDLLGLYMQRSWIILLSTALIMSLIYIFATPILVLIGQQKDIADMAGKFAVWMLPQLFAYAMNFPLAKFLQAQSKVMVMSIIAGCALVVHVLLSWILIFKVGWGLPAAALVLNLSWWIIVLAQIGYVFSGACRDAWAGFSWSAFSNLGAFVRLSLASGVMLCLEAWYLYLLILLAGYLKNPTIAVDAISICMNLMGWEFMIAIGFNIAISVRVSNELGAGRPRAAKFSVIVVVGTTFLVGVVLMAIIFITRNEFAVAFTDSKVVMSAVAQLAPLLAFTMLLNSVQPVLSGVAIGAGWQALVAYINLACYYLFGVPLGCLLGYYFDLGVEGIWAGMISGTLLQTIILCIITYRTKWNKEANQAKARITLWGGA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1844	68		31		1.0
1929	62		37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain