SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7077

Length: 2278 nt

UniGene Fasta

>sp_v3.0_unigene7077
ATGGGGCAACGAACCCAACTATAAGATACTTTACACGTTTGTCCGGGAACCGTTTGTCGTTTGTCCAAAAACCGTGAGAAAATATAGTGCAATTAACTTGTTACGAACGATCCGGTTTAGAAAAACACATATATAATAATGTTCGTCTCACTTTCGATCCTCCTCTTTTTGTTCAATTTCAATTCCAACCCACTGGTGGTATCTATGCTCGTCGTGAAACAGTGAGCAGTATTTGTGGGCTTTGGCGGGCGTAGATATTTCTGCTTTACGACGACCCCTTGTGCAGATCATCTACAGATAAGAGAAAGATGAAAGGAGACTGCCCTATCCAATTAATTGGTGACGTCCCGTGGTGTCAAAGCTAGAGGGTCGGACTATTTGCAGCTTCGATTTGTTTTTCTCCAACACTTTCTCCCTTTTCTTCTCCTCCTACAGGTCGTTCATCAGAATGAGCAGCAAGGAAAATAATTTCAAAGATCTTAAAAAATGAATCACAAATAAAACAGTATTAAGAAAGCCACTGTTGTGAAGGAAAAACACATTTCAACTTATTCAATGACTGCAATGCCAACAGTTGGAACAGCTGGAGGGATTTTCCTTCTTTCATTCATGGTTATATGCCCATGCTTTCGTGTCAAAAAGAAAGAAGAAAAACGCCCTTGTCTTGTGCCTCCTCCAATGGACTCAATTTCATCTTTTGAGGTAAGTTCCACAAGTGAATTGACAACGGCTAGCCCACATCGGTTTTCTCTTTCTCCACAGCCAAGCAATGTTGGAGCTATTATGTTTTCCCTAGCTCAGATTAGTAAAGCAACTCGCAACTTTTCACCATCATTAAAGATTGGTCAAGGAGGATTTGGAACAGTTTATAAAGGTCAGCTGGATAATGGCCAAGTTGTTGCTATTAAACGAGCTAAAAAGGATGCATTTGAGTCACGCCTAACAGCAGAGTTCAGGAATGAAGTTGGAATGTTGGCTAGAATAGAGCATTTGAGCCTTGTGAAACTGATTGGAGTTTGTGAGCAGGAGAAGGAACATATTCTTGTAACTGAGTTTGTTCCCAATGGCACTCTAAGAGAGCATCTAGATGGGCAACGAGGAACATTTTTGGATTTGCCAACACGCTTGGACATTGCAATTGATGTTGCACATGCCCTCACATATCTTCACCTATATGCAGAGCAGTCAATAATTCATCGAGATGTAAAATCTTCAAACATCCTCTTGACTGAAACTTTCCGGGCCAAGGTTGCTGACTTTGGCTTTTCCCGAATTGGTCCATCGGAAGCAAATGAAACCCATATTTCAACTCAAGTTAAGGGAACTGCAGGTTACCTTGATCCAGAGTATCTGAAGACATATCAGCTAACACAGAAAAGTGATGTTTATTCATTTGGAATCTTACTAGTAGAAATTCTTACTGGACGACGCCCCATAGAGTTCAAGAAGGAAATTGAGGAGCGGATCACTATCAGATGGGCTTTCTCCAAATTCAATGGAGGTAAGGCAACTGAAATTTTGGATGAACACTTGGTAAGAGTTCCAGGGATAGACACGGTGGCAGAAAAGTTGTTCGAACTGGCATTTCAATGTTCTGCGCCTATGAAATCAGACAGACCAACTATGAAGCAAGCAGGAGAGCAACTTTGGGCTATAAGAAAAAGCTATCAGGCCTTGAAGTTGAGAGATAATTTTAATTAGAACTGATTTTTTAATATTTGTTTTATAGGGCTACCTCAAAACAAACCTAATGTTGTGTCCTTTTTTAAGGGGATAACAGCAATTATTTGGAAACTCTACGTCTTGTACATTTTTTAGCACTGTAACTGAAGTATGGATGTGATCAGTGCAGTATCAATTTATTCTTAAAAACAGCAAGTATTAGATAGAATCCATGTAACTATTCGAACTTGACCTGGTTATAATGCCTTTGTATCTAAAGAAGGTAACATATGTGTGATCTGGTAATTCAACGTGTTCTATTGGTAGTCCTGAGATGTAAATGTAATCAAACTGACAATCTGTGTTCTGGATTGAAGTTCCTTTTTAATAGTCTTTGAGAAGGTTCAGTAAATGGAATTGTAGGTGCTACATGGTGGTGGCAAAGGAAGAGCTCAATTCAATGTCAAAATAGACTGATATTCAGTATCTTGTGTGGTTGAAATGTCGCGGTTTTTGACAATAAATAATAAGTTGCCCTTAAAGTGAGTTTGGCACTAAGAACATGTTGAAATATATCAATATTATTTATCATTCTATGTTGCAAATTCATTGAAAT

Ace file of the UniGene sp_v3.0_unigene7077

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin-binding receptor-like cytoplasmic kinase 3 [Arabidopsis thaliana] gb\|AAK32926.1\|AF367339_1 At2g11520/F14P14.15 [Arabidopsis thaliana] gb\|AAD28055.2\| putative protein kinase [Arabidopsis thaliana] gb\|AAM16251.1\| At2g11520/F14P14.15 [Arabidopsis	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Receptor protein kinase-like	-	-	7.399e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.448e-13	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.922e-10	-

Source	Gene names
Sma3	AT1G79620; AT4g00330; AT5G49760; AT5G49770; A_IG005I10.8; At1g30570; At1g79620; At1g79620/F20B17_5; At2g11520; At2g21480; At2g23450; At4g00330; At5g49760; At5g49760/K2I5_13; At5g49780; At5g54380; B1143G03.32; B1148D12.10; DMI2; F26B6.10; F5I10.8; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G11520.1	CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 chr2:4619145-4621448 FORWARD LENGTH=510	50%
RefSeq	Arabidopsis thaliana	NP_565351.1	calmodulin-binding receptor-like cytoplasmic kinase 3 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002331067.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ93

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is longer than subject: 382 - 350

Fln protein: MTAMPTVGTAGGIFLLSFMVICPCFRVKKKEEKRPCLVPPPMDSISSFEVSSTSELTTASPHRFSLSPQPSNVGAIMFSLAQISKATRNFSPSLKIGQGGFGTVYKGQLDNGQVVAIKRAKKDAFESRLTAEFRNEVGMLARIEHLSLVKLIGVCEQEKEHILVTEFVPNGTLREHLDGQRGTFLDLPTRLDIAIDVAHALTYLHLYAEQSIIHRDVKSSNILLTETFRAKVADFGFSRIGPSEANETHISTQVKGTAGYLDPEYLKTYQLTQKSDVYSFGILLVEILTGRRPIEFKKEIEERITIRWAFSKFNGGKATEILDEHLVRVPGIDTVAEKLFELAFQCSAPMKSDRPTMKQAGEQLWAIRKSYQALKLRDNFN*

Protein Length: 383

Fln nts: ATGGGGCAACGAACCCAACTATAAGATACTTTACACGTTTGTCCGGGAACCGTTTGTCGTTTGTCCAAAAACCGTGAGAAAATATAGTGCAATTAACTTGTTACGAACGATCCGGTTTAGAAAAACACATATATAATAATGTTCGTCTCACTTTCGATCCTCCTCTTTTTGTTCAATTTCAATTCCAACCCACTGGTGGTATCTATGCTCGTCGTGAAACAGTGAGCAGTATTTGTGGGCTTTGGCGGGCGTAGATATTTCTGCTTTACGACGACCCCTTGTGCAGATCATCTACAGATAAGAGAAAGATGAAAGGAGACTGCCCTATCCAATTAATTGGTGACGTCCCGTGGTGTCAAAGCTAGAGGGTCGGACTATTTGCAGCTTCGATTTGTTTTTCTCCAACACTTTCTCCCTTTTCTTCTCCTCCTACAGGTCGTTCATCAGAATGAGCAGCAAGGAAAATAATTTCAAAGATCTTAAAAAATGAATCACAAATAAAACAGTATTAAGAAAGCCACTGTTGTGAAGGAAAAACACATTTCAACTTATTCA_-_ATGACTGCAATGCCAACAGTTGGAACAGCTGGAGGGATTTTCCTTCTTTCATTCATGGTTATATGCCCATGCTTTCGTGTCAAAAAGAAAGAAGAAAAACGCCCTTGTCTTGTGCCTCCTCCAATGGACTCAATTTCATCTTTTGAGGTAAGTTCCACAAGTGAATTGACAACGGCTAGCCCACATCGGTTTTCTCTTTCTCCACAGCCAAGCAATGTTGGAGCTATTATGTTTTCCCTAGCTCAGATTAGTAAAGCAACTCGCAACTTTTCACCATCATTAAAGATTGGTCAAGGAGGATTTGGAACAGTTTATAAAGGTCAGCTGGATAATGGCCAAGTTGTTGCTATTAAACGAGCTAAAAAGGATGCATTTGAGTCACGCCTAACAGCAGAGTTCAGGAATGAAGTTGGAATGTTGGCTAGAATAGAGCATTTGAGCCTTGTGAAACTGATTGGAGTTTGTGAGCAGGAGAAGGAACATATTCTTGTAACTGAGTTTGTTCCCAATGGCACTCTAAGAGAGCATCTAGATGGGCAACGAGGAACATTTTTGGATTTGCCAACACGCTTGGACATTGCAATTGATGTTGCACATGCCCTCACATATCTTCACCTATATGCAGAGCAGTCAATAATTCATCGAGATGTAAAATCTTCAAACATCCTCTTGACTGAAACTTTCCGGGCCAAGGTTGCTGACTTTGGCTTTTCCCGAATTGGTCCATCGGAAGCAAATGAAACCCATATTTCAACTCAAGTTAAGGGAACTGCAGGTTACCTTGATCCAGAGTATCTGAAGACATATCAGCTAACACAGAAAAGTGATGTTTATTCATTTGGAATCTTACTAGTAGAAATTCTTACTGGACGACGCCCCATAGAGTTCAAGAAGGAAATTGAGGAGCGGATCACTATCAGATGGGCTTTCTCCAAATTCAATGGAGGTAAGGCAACTGAAATTTTGGATGAACACTTGGTAAGAGTTCCAGGGATAGACACGGTGGCAGAAAAGTTGTTCGAACTGGCATTTCAATGTTCTGCGCCTATGAAATCAGACAGACCAACTATGAAGCAAGCAGGAGAGCAACTTTGGGCTATAAGAAAAAGCTATCAGGCCTTGAAGTTGAGAGATAATTTTAATTAG___AACTGATTTTTTAATATTTGTTTTATAGGGCTACCTCAAAACAAACCTAATGTTGTGTCCTTTTTTAAGGGGATAACAGCAATTATTTGGAAACTCTACGTCTTGTACATTTTTTAGCACTGTAACTGAAGTATGGATGTGATCAGTGCAGTATCAATTTATTCTTAAAAACAGCAAGTATTAGATAGAATCCATGTAACTATTCGAACTTGACCTGGTTATAATGCCTTTGTATCTAAAGAAGGTAACATATGTGTGATCTGGTAATTCAACGTGTTCTATTGGTAGTCCTGAGATGTAAATGTAATCAAACTGACAATCTGTGTTCTGGATTGAAGTTCCTTTTTAATAGTCTTTGAGAAGGTTCAGTAAATGGAATTGTAGGTGCTACATGGTGGTGGCAAAGGAAGAGCTCAATTCAATGTCAAAATAGACTGATATTCAGTATCTTGTGTGGTTGAAATGTCGCGGTTTTTGACAATAAATAATAAGTTGCCCTTAAAGTGAGTTTGGCACTAAGAACATGTTGAAATATATCAATATTATTTATCATTCTATGTTGCAAATTCATTGAAAT

Fln Alignment:

Contig7077___MFSLAQISKATRNFSPSLKIGQGGFGTVYKGQLDNGQVVAIKRAKKDAFESRLTAEFRNEVGMLARIEHLSLVKLIGVCEQEKEHILVTEFVPNGTLREHLDGQRGT--FLDLPTRLDIAIDVAHALTYLHLYAEQSIIHRDVKSSNILLTETFRAKVADFGFSRIGPSEANETHISTQVKGTAGYLDPEYLKTYQLTQKSDVYSFGILLVEILTGRRPIEFKKEIEERITIRWAFSKFNGGKATEILDEHLVRVPGIDTVAEKLFELAFQCSAPMKSDRPTM
B8LQ93______________VFSLKELHSATNNFNYDNKLGEGAFGSVYWGQLWDGSQIAVKRLK--VWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCSEGQERLIVYDYMPNLSILSHLHGQHAAECLLDWSRRMNIAIGSAEGLAYLHHHATPHIIHRDIKASNVLLDSDFKAQVADFGFAKLIPE--GETHVTTGVKGTVGYLAPEYAMWRKASENCDVYSFGILLLELVSGKKPVDKMDSNTKHTIVDWALPLVLEGKYDQLADPKFHGKYNEEEL-KRVVHVAIMCAQNAPEKRPTM

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1637		96		3	0.984346
1978	2		97		0.977151
2047		2		94	0.967557
2152			12	87	0.992554
2154	16	83			0.994512
2155	16			83	0.994512
2156	16			83	0.994512
2157	20		80		0.995493
2158	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain