SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7058

Length: 2968 nt

UniGene Fasta

>sp_v3.0_unigene7058
GAATATGTATACTGTCTTGGGAGAGAGATTCAGGAAATGTGAACCAACAAGCAATATTGGGAATGGCATTCTATATGAATGTATATGCACGGTGACATCTATTTATCCCAGTCCCAAGCTACTGGAAACTGCGGCTGAAGTGACATCCAGGTTTTTAAAGAGTGACAGCCACAATTTGAAGTATATGGGTATTGATGCACTTGGTAGAGTCATTAAGATCAACCCTGACTTTGCAGAAGAACATCAATTGGCAGTGATCGATTGCTTAGAGGATCCAGATGATTCACTTAAACGGAAGACATTGGATTTACTTTATAAAATGACAAAATCCAGCAATGTTGAAGTAATTGCAGAACGCATGATCAGCTACATGATCAGCATCAATGACTCTCACTATAAAACAGAAATAGCATCAAGATCCATCGAACTTGCAGAACGCTTTGCACCAAGCAATCATTGGTTCATTCAGACTATGAACAAAGTCTTTGAGCATGCTGGAGATCTGGTAAATATTAAAGTGGCACATAATTTAATGCGACTGATTGCTGAAGGTTCTGGTGAAGATGATGAGGATGCTGATAGCCAATTGAGATCTTCTGCTGTGGATTCATATTTGCAGATACTTGGAGAGCCGAAACTTCCATCTATTCTTTTGCAAGTAATATGCTGGGTTTTAGGAGAGTATGGAACAGCTGATGGGAAGTACTCTGCACAATATATTATAGGAAAATTATGTGATGTGGCCGAGGCTCATTCAGGGGATAATGTGGTCATGGGTTATGCTACAACTGCCATCATGAAGATCTGTGCTTTTGAAATCACAGCTGGAAAGAAAGTGGAGCTATTTCCAGAGTGCCATTCCTTAATTGATGAAATATCAACATCACATTCGACAGACTTGCAACAACGTGCCTATGAATTACAGGCACTGCTAGGGTTAAGTGCTGATATAGTTGAATGTGTAATGCCATTAGATGCAAGCTGTGAAGACATCGAGGTAGACAAGCGCCTATCATTTTTGAATGATTATGTGCAGTCATCTCTAGAGAAAGGAGCAAGGCCTTACATACCAGAGAATGAACGTCTGAACATGGATAATGTGAATGCTTTCCGCAGTCATCAGGACCAGAATGAAGGTGCTGGTCATTCTTTAAGGTTTGAAGCATATGAAATTCCAAAAGTTCCAGTACCAACAAGAGCTGTCCAAGTCTCTGTTTCAGCATCAACTGAGTTTGAGGCAATGGCGGAGTCTAGTTATGCAAGAGCAATGCAGCTGGCTGCACCTGTTTCATCATCATCAGATACACAGTTTTCCATCACTGATGGTATCAAGCTACGATTGGATGGGGTACAAAAGAAATGGGGTCGACCAACATATACTCCCACTTCATCAGTATCTCCTCCGGCCAACACAGACAAGTCCAGTAATGGGACACATCAAGGTATACTTGGTGGACCCATCACTATGCAAAACAAGGAGAGCTCATATGAGTCGAGACAAATCGATCGAAGGCAACAGGCTGAACCCTCTATAGAGAAGCAGAAACTTGCTGCTTCTTTATTTGGATCATCTTCTGCGAAAACTGACAAGAGAGGTGCAGTAGCCAAAGTTCCTAAACCAGTTGATAAGAAGAATAATCCTGTGCGTTCAGAGAAGAGCCAGACAGTTTCCAAAGTTTCTTCTCATATGATGGACACAGCCATGTCTCAGCAAACTGTTAGAGCTCCGCCTCCACCAGACCTCCTTGATTTGAGTGAAGAAAGCCCTGCTATAGAAGTATCTTATGACCCATTTAAGCAGCTTGAGGGCCTCCTTGAACCCTCTGAAGATGCTGCAAATCCTAAGCTTGCAGCTTCTGTAGTTACCAGTCCACCAGTGGATCTCATGTCTTTATATACGACCACACCAATTACAGGTCTGTCTTTAAACCCCACTACTTCTGTGGGACAAATTACTACAGGTATTCTACCAAATGATGGCTTTGGTGGGGCTTCGGTCCTCCAAACTAGTTTTTCCGGTTTGGGCAGCCATGGTGTGGGTGTAGCTGCTACCTCTGGTCAATCTATGCCAGTTGTGAAAAAGGGGGAATCTTCCCAGGATTCTTTACAAAAAGACGCAGTATCTAGACAAGTTGGAGTGACTCCAACGGGCAAGAACCCCAACCTTTTCAAAGATCTGCTTGGTTGATTAATAAGGTCCAATACCAGACAACTTGGAGCTACATTTGTGGCACAATAATTGTTCTTTTACATCTTGAGGGTTTAAAAATCAGAGGCAGGTATGTGATTGGAAGAATTATTCTGATTATAAAGGCCATCTCTGTCATATTGCAAGGAAATGCTTTTTTCCTTGTTGAAACACTGCGAGTTGGTAGAATTCTAGAGAATTTTATGGGATGCAACAGGTGGGATTTCCAGAAGCATCCCTATTGAAACGTAAAGTTTCTAGGATTTAGCCATACAAGCTTCTATGTGTCCATCTCATAAATTGTATTCCCTGTGTATTTTTATTCAAGCATAGATAAATTCTCCAAATAGGAGGATGATGGTTTTGGGTCTTTTGTTGGAACATTATCCTTGAAATTCTTCTCAGAGTATTTTTTCTGAGATCTTTGTTGTTCTGGTAGCACAGTGTTTCACGAGTGTAAACTGTTAGTGGATTTTGAAGAGGACAAATAAATGTGCTGAGATGTTGTAAGGAATGCACTCTTCTGTGTCAAGTGGTATTATTTTCCCACTTAGTGTTTTCAACTATTGATTCACCTGGTTCCGCTTTTTAAATTATTGCATCTATAATTAGATATCCCACTATTGCAACATTACCATTTGGCTACATTACCAGGGATCTTATGTATCCTTCGAACACATTTGAGTGTTCTAGTGTTATTAGTTGTATTATTTGAGAACCTTTCGACATTCAACATTGCGGGCAAATAAATGTCTTTTAAAGTCTACAAATTGAATCTCG

Ace file of the UniGene sp_v3.0_unigene7058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP-4 complex subunit epsilon [Arabidopsis thaliana] sp\|Q8L7A9.1\|AP4E_ARATH RecName: Full=AP-4 complex subunit epsilon; AltName: Full=AP-4 adapter complex subunit epsilon; AltName: Full=Adapter-related protein complex 4 subunit epsilon; AltName: Full=Epsil	-	-	0.0	51%
FL-Next	sp=AP-4 complex subunit epsilon; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%

Source	Gene names
Sma3	At1g31730; F27M3_7; GSVIVT00001186001; MICPUCDRAFT_34904; MICPUN_83194; OSTLU_39338; Os01g0916200; OsI_04915; OsJ_04538; P0004D12.31; P0413C03.5; PHATRDRAFT_16891; PHYPADRAFT_128444; PHYPADRAFT_208374; POPTRDRAFT_596858; RCOM_0867610; THAPS_596;

Source	GOs	Term	Type	Identity
Sma3	membrane coat	GO:0030117	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-4, epsilon subunit	IPR017109	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31730.1	Adaptin family protein chr1:11359907-11363916 FORWARD LENGTH=938	53%
RefSeq	Arabidopsis thaliana	NP_174454.2	AP-4 complex subunit epsilon [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002328755.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8L7A9

Fln msg: your sequence is shorter than subject: 729 - 938

Fln protein: NMYTVLGERFRKCEPTSNIGNGILYECICTVTSIYPSPKLLETAAEVTSRFLKSDSHNLKYMGIDALGRVIKINPDFAEEHQLAVIDCLEDPDDSLKRKTLDLLYKMTKSSNVEVIAERMISYMISINDSHYKTEIASRSIELAERFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGSGEDDEDADSQLRSSAVDSYLQILGEPKLPSILLQVICWVLGEYGTADGKYSAQYIIGKLCDVAEAHSGDNVVMGYATTAIMKICAFEITAGKKVELFPECHSLIDEISTSHSTDLQQRAYELQALLGLSADIVECVMPLDASCEDIEVDKRLSFLNDYVQSSLEKGARPYIPENERLNMDNVNAFRSHQDQNEGAGHSLRFEAYEIPKVPVPTRAVQVSVSASTEFEAMAESSYARAMQLAAPVSSSSDTQFSITDGIKLRLDGVQKKWGRPTYTPTSSVSPPANTDKSSNGTHQGILGGPITMQNKESSYESRQIDRRQQAEPSIEKQKLAASLFGSSSAKTDKRGAVAKVPKPVDKKNNPVRSEKSQTVSKVSSHMMDTAMSQQTVRAPPPPDLLDLSEESPAIEVSYDPFKQLEGLLEPSEDAANPKLAASVVTSPPVDLMSLYTTTPITGLSLNPTTSVGQITTGILPNDGFGGASVLQTSFSGLGSHGVGVAATSGQSMPVVKKGESSQDSLQKDAVSRQVGVTPTGKNPNLFKDLLG*

Protein Length: 730

Fln nts: GAATATGTATACTGTCTTGGGAGAGAGATTCAGGAAATGTGAACCAACAAGCAATATTGGGAATGGCATTCTATATGAATGTATATGCACGGTGACATCTATTTATCCCAGTCCCAAGCTACTGGAAACTGCGGCTGAAGTGACATCCAGGTTTTTAAAGAGTGACAGCCACAATTTGAAGTATATGGGTATTGATGCACTTGGTAGAGTCATTAAGATCAACCCTGACTTTGCAGAAGAACATCAATTGGCAGTGATCGATTGCTTAGAGGATCCAGATGATTCACTTAAACGGAAGACATTGGATTTACTTTATAAAATGACAAAATCCAGCAATGTTGAAGTAATTGCAGAACGCATGATCAGCTACATGATCAGCATCAATGACTCTCACTATAAAACAGAAATAGCATCAAGATCCATCGAACTTGCAGAACGCTTTGCACCAAGCAATCATTGGTTCATTCAGACTATGAACAAAGTCTTTGAGCATGCTGGAGATCTGGTAAATATTAAAGTGGCACATAATTTAATGCGACTGATTGCTGAAGGTTCTGGTGAAGATGATGAGGATGCTGATAGCCAATTGAGATCTTCTGCTGTGGATTCATATTTGCAGATACTTGGAGAGCCGAAACTTCCATCTATTCTTTTGCAAGTAATATGCTGGGTTTTAGGAGAGTATGGAACAGCTGATGGGAAGTACTCTGCACAATATATTATAGGAAAATTATGTGATGTGGCCGAGGCTCATTCAGGGGATAATGTGGTCATGGGTTATGCTACAACTGCCATCATGAAGATCTGTGCTTTTGAAATCACAGCTGGAAAGAAAGTGGAGCTATTTCCAGAGTGCCATTCCTTAATTGATGAAATATCAACATCACATTCGACAGACTTGCAACAACGTGCCTATGAATTACAGGCACTGCTAGGGTTAAGTGCTGATATAGTTGAATGTGTAATGCCATTAGATGCAAGCTGTGAAGACATCGAGGTAGACAAGCGCCTATCATTTTTGAATGATTATGTGCAGTCATCTCTAGAGAAAGGAGCAAGGCCTTACATACCAGAGAATGAACGTCTGAACATGGATAATGTGAATGCTTTCCGCAGTCATCAGGACCAGAATGAAGGTGCTGGTCATTCTTTAAGGTTTGAAGCATATGAAATTCCAAAAGTTCCAGTACCAACAAGAGCTGTCCAAGTCTCTGTTTCAGCATCAACTGAGTTTGAGGCAATGGCGGAGTCTAGTTATGCAAGAGCAATGCAGCTGGCTGCACCTGTTTCATCATCATCAGATACACAGTTTTCCATCACTGATGGTATCAAGCTACGATTGGATGGGGTACAAAAGAAATGGGGTCGACCAACATATACTCCCACTTCATCAGTATCTCCTCCGGCCAACACAGACAAGTCCAGTAATGGGACACATCAAGGTATACTTGGTGGACCCATCACTATGCAAAACAAGGAGAGCTCATATGAGTCGAGACAAATCGATCGAAGGCAACAGGCTGAACCCTCTATAGAGAAGCAGAAACTTGCTGCTTCTTTATTTGGATCATCTTCTGCGAAAACTGACAAGAGAGGTGCAGTAGCCAAAGTTCCTAAACCAGTTGATAAGAAGAATAATCCTGTGCGTTCAGAGAAGAGCCAGACAGTTTCCAAAGTTTCTTCTCATATGATGGACACAGCCATGTCTCAGCAAACTGTTAGAGCTCCGCCTCCACCAGACCTCCTTGATTTGAGTGAAGAAAGCCCTGCTATAGAAGTATCTTATGACCCATTTAAGCAGCTTGAGGGCCTCCTTGAACCCTCTGAAGATGCTGCAAATCCTAAGCTTGCAGCTTCTGTAGTTACCAGTCCACCAGTGGATCTCATGTCTTTATATACGACCACACCAATTACAGGTCTGTCTTTAAACCCCACTACTTCTGTGGGACAAATTACTACAGGTATTCTACCAAATGATGGCTTTGGTGGGGCTTCGGTCCTCCAAACTAGTTTTTCCGGTTTGGGCAGCCATGGTGTGGGTGTAGCTGCTACCTCTGGTCAATCTATGCCAGTTGTGAAAAAGGGGGAATCTTCCCAGGATTCTTTACAAAAAGACGCAGTATCTAGACAAGTTGGAGTGACTCCAACGGGCAAGAACCCCAACCTTTTCAAAGATCTGCTTGGTTGA___TTAATAAGGTCCAATACCAGACAACTTGGAGCTACATTTGTGGCACAATAATTGTTCTTTTACATCTTGAGGGTTTAAAAATCAGAGGCAGGTATGTGATTGGAAGAATTATTCTGATTATAAAGGCCATCTCTGTCATATTGCAAGGAAATGCTTTTTTCCTTGTTGAAACACTGCGAGTTGGTAGAATTCTAGAGAATTTTATGGGATGCAACAGGTGGGATTTCCAGAAGCATCCCTATTGAAACGTAAAGTTTCTAGGATTTAGCCATACAAGCTTCTATGTGTCCATCTCATAAATTGTATTCCCTGTGTATTTTTATTCAAGCATAGATAAATTCTCCAAATAGGAGGATGATGGTTTTGGGTCTTTTGTTGGAACATTATCCTTGAAATTCTTCTCAGAGTATTTTTTCTGAGATCTTTGTTGTTCTGGTAGCACAGTGTTTCACGAGTGTAAACTGTTAGTGGATTTTGAAGAGGACAAATAAATGTGCTGAGATGTTGTAAGGAATGCACTCTTCTGTGTCAAGTGGTATTATTTTCCCACTTAGTGTTTTCAACTATTGATTCACCTGGTTCCGCTTTTTAAATTATTGCATCTATAATTAGATATCCCACTATTGCAACATTACCATTTGGCTACATTACCAGGGATCTTATGTATCCTTCGAACACATTTGAGTGTTCTAGTGTTATTAGTTGTATTATTTGAGAACCTTTCGACATTCAACATTGCGGGCAAATAAATGTCTTTTAAAGTCTACAAATTGAATCTCG

Fln Alignment:

Contig7058___MYTVLGERFRKCEPTSNIGNGILYECICTVTSIYPSPKLLETAAEVTSRFLKSDSHNLKYMGIDALGRVIKINPDFAEEHQLAVIDCLEDPDDSLKRKTLDLLYKMTKSSNVEVIAERMISYMISINDSHYKTEIASRSIELAERFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIXXXXXXXXXXXXXQLRSSAVDSYLQILGEPKLPSILLQVICWVLGEYGTADGKYSAQYIIGKLCDVAEAHSGDNVVMGYATTAIMKICAFEITAGKKVELFPECHSLIDEISTSHSTDLQQRAYELQALLGLSADIVECVMPLDASCEDIEVDKRLSFLNDYVQSSLEKGARPYIPENERLNMDNVNAFRSHQDQNEGAGHSLRFEAYEIPKVPVPTRAVQVSVSASTEFEAMAESSYARAMQLAAPVSSSSDTQFSITDGIKLRLDGVQKKWGRXXXXXXXXXXXXANTDKSSNG--THQGILGGPITMQNKESSYESRQIDRRQQAEPSIEKQKLAASLFGSSSAKTDKRGXXXXXXXXXXXXXXXXRSEKSQTVSKVSSHMMDTAMSQQTVRAXXXXXXXXXXXXXXAIEVSYDPFKQLEGLLEPSEDAANPKLAASVVTSPPVDLMSLYT-TTPITGLSLNPTTSVGQITTGILPNDGFGGASVLQTSFSGLGSHGVGVAATSGQSMPVVKKGESSQDSLQKDAVSRQVGVTPTGKNPNLFKDLLG
Q8L7A9______________MSMVLGDLFRKCDSSTNIGNAILYECIRCISCILPNPKLLEAAADAISKFLKSDSHNLKYMGIDGLGRLIKISPDIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDNHYKTEIASRCVELAEQFAPSNQWFIQIMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDDADSKLRLSAVESYLQLISEPKLPSLFLQVISWVLGEYGTADGKYSASYISGKLCDVADAYSSDETVKGYAVSALMKIYAFEIASGRKVDVLPECQSLIEELLASHSTDLQQRAYELQALLALDARAVETILPLDASCEDIEVDKDLSFLNGYIQQAIESGAQPYISERERSGMFETTDYHP-QDHHEVPTHALRFEAYELPKPSVPPQ-------ASNELVPVPEPSY--YSESHQPISTSLVSERESSE-IKLRLDGVKQKWGR--PSYQSTTAASSTTPQAANGISTHSD-AGVGSSSSKPRSSYE----PKKPEIDP--EKQRLAASLFGGSSSRTDKRS-----------------SSGGHKPAKGTANKTATVPKENQTPVQPPPDLLDFGEPTATTATAMDPFKELEGLMDSSSQDGGSS-----------DVMGLYSDAAPVT-----TTTSVDSL------------LSELSDSSKG----------NSRTYQPQTSKGPNTKEALEKDALVRQMGVNPTSQNPTLFKDLLG

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
236	57			42	1.0
426	12		87		0.992554
590	11		88		0.923564
1730	16		83		0.999991
1997	30		70		1.0
2069	12		87		0.992554
2121	25		75		1.0
2122		25		75	1.0
2125		75		25	1.0
2232			90	10	0.90298
2237	90			10	0.90298
2238		10		90	0.90298
2336	11		88		0.923564
2350		87		12	0.992554
2416		50		50	1.0
2812	61		38		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1289	1300	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain