SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7052

Length: 2333 nt

UniGene Fasta

>sp_v3.0_unigene7052
ACTGTACTTCAGTGTATTTGTTGCAATCAGAGTGCTTGTTGCAGTCCCTCTGGTCAAATGCATGACTGCAATAGTTGATAAGTTGAGTTTGTTTGTAAACCCTAGATCAGACGAGGCGGCTGCTTCTTCTTCGTTATCGAATATGAACTCTGGTTCAGGCACTTCTGCCTCACTCCATGGCAGCTCTCTGCACATTCAAGCCGTTCCAGGGTTTCATTCTTCGTCGCTTCAAGCGTCGTCCCCGTTTCCCGTCTCGTCCAACAGCAACAACAACAAACGTAAACGTCGTCCAGCAGGAACCCCTGATCCCGATGCGGAAGTGGTGGCATTGTCGCCCAAAACGTTAATGGAATCTGATAGATATGTCTGTGAGATATGCCACCAGGGCTTTCAGAGGGATCAAAACTTGCAGATGCACAGGCGTCGGCACAAGGTTCCATGGAAGCTGTTAAAGAGACCTACTCCAGAAGTCCGGAAACGAGTGTATGTTTGCCCTGACCCAACGTGCCTTCATAACGATCCATGCCATGCTCTTGGAGACCTAGTTGGGATCAAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGAAGTGCGAGAAATGCTCAAAGGGATATGCAGTCCAATCTGACTACAAAGCCCATCTCAAGACCTGTGGAACTAGAGGCCATTCTTGTGACTGCGGCCGAGTTTTTCCAGGGTAGAGAGCTTCATCGAACACCAAGATAATTGCATTAAAGCAAAAGAGAGAGCAGCGTTTGGATACAGCGATCAGCGGAGCCTGCCTTCATTAACAGCCAGGACCAGCAGTTCTAATGATACACTCAGTGTCACGAGGTCTGGGATCTCAACGGCAGGCAAACAATTTGATTCTGCTAAGTTTCACGACCAAGCTGCTTGGCTGAATATAGAACAGCGAGAGCTTCAATTTCTTTCTGCAAATCACCAGCACAATACTTCTGAAACAGCAATAACATCGACGAACAACGCAGCTGCTGTAACCAGAGATCATTTCATTAGCTCGGCCACTGACCAGATATCGAATCCTGCCACCTTACATGCCAAAGAAAACAGATTTCTTGATGACAGTGCTCTAAGGTTGCAGCTCTCTATAGGCTTCTGCAAGTCTCCTGGAAACCATGAAGAAAAGCCACATGTAAAACCAGATCACTTCACTGCTGTTAATCAAACACAGCCAAGCAATAGGGCTGGAAACCAGAAAGCCCTAGGACTTACACTTTACTCTAACGATTCAATGCAATGTACTGAGAACGTTGAAACTGAAGCAGCAATGACTGATGTTTTCAGTACTTCATCCAGGCCAGCAGGCCATTATGAAGCAAGCCTAATAAACGACACCGGCAGCTCAGGCGCAGTGGCAGAAAACAGCTTCAGGGATTCTTCGCCTCAGAAGAGGAGAAAAGAGTTGAGCTTATTCCAAGCACTTTGGCCTGGTCACATGGTAAGACGTCATTCCGAGGAAGTGCAGCCTCCTGTAAGCCTAAGATCTCAGATTCCTGCGCCGTCCCTTCCTGAAACCAGGCAAGCAGAAAACCAGTTGGGTCACATGGCCGCAGAAGCTATAGCCAATGTAGAAAGCATGAGCTCACAAAGCGAGGCCGTAGAGAGAACCCAACTGGTAAACCCATGGTCCGATCACATCGCTGCTGCCCGCCTCGCTAAAGAACAAGCCCAGCAAGAACGAGACGAAGCCCAGAGTCACATGGCGGGAGCCGAGCTTCTTAAACACCAGGCGAGGGAGCAGCTGAGGCAGGCCACGGCCGAAAAAGCTTACGCAGAACACGCAAGAGATTTGGCGAAGAAGCAGATTGAATTAGCTGAAGCCGAATTCGAAGCAGCAAGGCGAATTCAAGAACAGGCTCACGCCCAGCTGGCCAGAGCTCAGCTTTTGAAAGAGCAGGCAACTAGGCGAATCGATGAAACTCGCCTAGAGATCACTTGCCAAGCTTGTCGCCAGCAGTTTCTCTGCCATATGCCTCCATTATGGCAGCCTGATCAGAGCTCTAACAAAACACCTATGATACTCCCAGTTGAGTACCCTTCCCCATCCAATTTTCCAAGACCTGTGCTTTTTCAAAATGGTCTCAAGAAAGAACCCTGAATGGACCATCAACCTGCAAATGGAATTTTGCAATTTTCTGTGTGATCCTTGCCAGCTGCTTCAAAACCGATGAACCATGTCAAATTTGGTAAGCTTTGAGTTGATCCTTGCATAGTTCAACTCTGAATTTTCTGAATGAATATTTTGAATACTGCATGCCATGTTTCAATAAGAGAATTCACAATACGGGGACCCCATTACATCAT

Ace file of the UniGene sp_v3.0_unigene7052

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-synt_B multi-domain protein	-	-	5.0e-06	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Nucleic acid binding protein, putative	-	-	1.6e-34	-

Source	Gene names
Sma3	12.EGGPLANT.6; 12.PETUNIA.6; 12.POTATO.11; AT4g02670; At1g03840; At1g14580; At1g25250; At1g55110; At1g68130; At2g01940; At2g02070; At2g02080; At2g02080/F5O4.15; At3g13810; At3g45260; At3g50700; At4g02670; At5g03150; At5g44160; At5g60470; At5g66730; B1066G

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	regulation of cell division	GO:0051302	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68130.1	AtIDD14, IDD14 indeterminate(ID)-domain 14 chr1:25532484-25534317 FORWARD LENGTH=419	89%
RefSeq	Arabidopsis thaliana	NP_176980.1	indeterminate(ID)-domain 14 protein [Arabidopsis thaliana]	89%
RefSeq	Populus trichocarpa	XP_002311555.1	predicted protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP08

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 462 aas, putative chimeric sequence, atg_distance in limit (1-15): atg_distance = 3, your sequence is shorter than subject: 216 - 698

Fln protein: MTAIVDKLSLFVNPRSDEAAASSSLSNMNSGSGTSASLHGSSLHIQAVPGFHSSSLQASSPFPVSSNSNNNKRKRRPAGTPDPDAEVVALSPKTLMESDRYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKRPTPEVRKRVYVCPDPTCLHNDPCHALGDLVGIKKHFRRKHSIEKQWKCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFPG*

Protein Length: 217

Fln nts: ACTGTACTTCAGTGTATTTGTTGCAATCAGAGTGCTTGTTGCAGTCCCTCTGGTCAAATGC_-_ATGACTGCAATAGTTGATAAGTTGAGTTTGTTTGTAAACCCTAGATCAGACGAGGCGGCTGCTTCTTCTTCGTTATCGAATATGAACTCTGGTTCAGGCACTTCTGCCTCACTCCATGGCAGCTCTCTGCACATTCAAGCCGTTCCAGGGTTTCATTCTTCGTCGCTTCAAGCGTCGTCCCCGTTTCCCGTCTCGTCCAACAGCAACAACAACAAACGTAAACGTCGTCCAGCAGGAACCCCTGATCCCGATGCGGAAGTGGTGGCATTGTCGCCCAAAACGTTAATGGAATCTGATAGATATGTCTGTGAGATATGCCACCAGGGCTTTCAGAGGGATCAAAACTTGCAGATGCACAGGCGTCGGCACAAGGTTCCATGGAAGCTGTTAAAGAGACCTACTCCAGAAGTCCGGAAACGAGTGTATGTTTGCCCTGACCCAACGTGCCTTCATAACGATCCATGCCATGCTCTTGGAGACCTAGTTGGGATCAAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGAAGTGCGAGAAATGCTCAAAGGGATATGCAGTCCAATCTGACTACAAAGCCCATCTCAAGACCTGTGGAACTAGAGGCCATTCTTGTGACTGCGGCCGAGTTTTTCCAGGGTAG___AGAGCTTCATCGAACACCAAGATAATTGCATTAAAGCAAAAGAGAGAGCAGCGTTTGGATACAGCGATCAGCGGAGCCTGCCTTCATTAACAGCCAGGACCAGCAGTTCTAATGATACACTCAGTGTCACGAGGTCTGGGATCTCAACGGCAGGCAAACAATTTGATTCTGCTAAGTTTCACGACCAAGCTGCTTGGCTGAATATAGAACAGCGAGAGCTTCAATTTCTTTCTGCAAATCACCAGCACAATACTTCTGAAACAGCAATAACATCGACGAACAACGCAGCTGCTGTAACCAGAGATCATTTCATTAGCTCGGCCACTGACCAGATATCGAATCCTGCCACCTTACATGCCAAAGAAAACAGATTTCTTGATGACAGTGCTCTAAGGTTGCAGCTCTCTATAGGCTTCTGCAAGTCTCCTGGAAACCATGAAGAAAAGCCACATGTAAAACCAGATCACTTCACTGCTGTTAATCAAACACAGCCAAGCAATAGGGCTGGAAACCAGAAAGCCCTAGGACTTACACTTTACTCTAACGATTCAATGCAATGTACTGAGAACGTTGAAACTGAAGCAGCAATGACTGATGTTTTCAGTACTTCATCCAGGCCAGCAGGCCATTATGAAGCAAGCCTAATAAACGACACCGGCAGCTCAGGCGCAGTGGCAGAAAACAGCTTCAGGGATTCTTCGCCTCAGAAGAGGAGAAAAGAGTTGAGCTTATTCCAAGCACTTTGGCCTGGTCACATGGTAAGACGTCATTCCGAGGAAGTGCAGCCTCCTGTAAGCCTAAGATCTCAGATTCCTGCGCCGTCCCTTCCTGAAACCAGGCAAGCAGAAAACCAGTTGGGTCACATGGCCGCAGAAGCTATAGCCAATGTAGAAAGCATGAGCTCACAAAGCGAGGCCGTAGAGAGAACCCAACTGGTAAACCCATGGTCCGATCACATCGCTGCTGCCCGCCTCGCTAAAGAACAAGCCCAGCAAGAACGAGACGAAGCCCAGAGTCACATGGCGGGAGCCGAGCTTCTTAAACACCAGGCGAGGGAGCAGCTGAGGCAGGCCACGGCCGAAAAAGCTTACGCAGAACACGCAAGAGATTTGGCGAAGAAGCAGATTGAATTAGCTGAAGCCGAATTCGAAGCAGCAAGGCGAATTCAAGAACAGGCTCACGCCCAGCTGGCCAGAGCTCAGCTTTTGAAAGAGCAGGCAACTAGGCGAATCGATGAAACTCGCCTAGAGATCACTTGCCAAGCTTGTCGCCAGCAGTTTCTCTGCCATATGCCTCCATTATGGCAGCCTGATCAGAGCTCTAACAAAACACCTATGATACTCCCAGTTGAGTACCCTTCCCCATCCAATTTTCCAAGACCTGTGCTTTTTCAAAATGGTCTCAAGAAAGAACCCTGAATGGACCATCAACCTGCAAATGGAATTTTGCAATTTTCTGTGTGATCCTTGCCAGCTGCTTCAAAACCGATGAACCATGTCAAATTTGGTAAGCTTTGAGTTGATCCTTGCATAGTTCAACTCTGAATTTTCTGAATGAATATTTTGAATACTGCATGCCATGTTTCAATAAGAGAATTCACAATACGGGGACCCCATTACATCAT

Fln Alignment:

Contig7052___GTPDPDAEVVALSPKTLMESDRYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKRPTPEVRKRVYVCPDPTCLHNDPCHALGDLVGIKKHFRRKHSIEKQWKCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVF
B8LP08______________GMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKRVYICPEPSCVHHDPSRALGDLTGIKKHFCRKHG-EKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLF

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1802	20	80			0.995493
1803			80	20	0.995493
1804	60		20		0.99255
1805	80		20		0.995493
1806	80		20		0.995493
1865		60	40		1.0
1982		10		90	0.90298
2069		90		10	0.90298
2070		90	10		0.90298
2072		10	90		0.90298
2076	90	10			0.90298
2081		90		10	0.90298
2113	10			90	0.90298
2114	10			90	0.90298
2116			10	90	0.90298
2117		90		10	0.90298
2226	85	14			0.993533
2270	80		20		0.995493
2283	75		25		0.996473
2284	75		25		0.996473
2305	75		25		0.996473
2316	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
265	276	CAA CAA CAA CAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain