SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7047

Length: 1034 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7047

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATATH9, putative n=1 Tax=Ricinus communis RepID=B9T5X6_RICCO	-	-	0.0	60%
FL-Next	sp=Putative ABC1 protein At2g40090; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%

Source	Gene names
Sma3	At2g40090; CHLREDRAFT_111503; GSVIVT00029277001; LOC_Os03g49140; OSJNBb0017F17.22; OsI_13145; OsJ_12218; PHYPADRAFT_202989; POPTRDRAFT_564017; RCOM_0339590; THAPSDRAFT_31771;

Source	InterPros	Term	Type	e value	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	0.0	-
Sma3	ABC-1	IPR004147	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G40090.1	ATATH9, ATH9 ABC2 homolog 9 chr2:16737685-16740303 REVERSE LENGTH=538	59%
RefSeq	Arabidopsis thaliana	NP_565923.1	putative ABC1 protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002311218.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O04212

Fln msg: your sequence is shorter than subject: 260 - 538

Fln protein: CGCHQATWNRPSDVAKLISQAFAEMIFKHGFVHCDPHAANMMVQVAPSGKMGILGKRKPQLVLLDHGLYRVLDPLTRAHYAKLWKALVFADVKGIKENSIKLGAGEDLYVLFAGVLTMRPWQKVLDPAIDHLRLNGTDADRAELQMYASQYFMQISELLKRLPRVILLLLKTNDCLRAVDNALGASVNTYVIIGRVSSTAAAELQLSQGSSIWSRLSIYLDKLEVEVRLLALQVAACLISLQRFLCSFGMRYGFREQIL*

Protein Length: 261

Fln nts: ATGTGGATGCCATCAAGCGACTTGGAATCGGCCAAGTGATGTTGCAAAACTGATAAGCCAGGCTTTTGCAGAGATGATCTTCAAACATGGATTTGTGCATTGTGACCCGCATGCCGCAAACATGATGGTTCAAGTTGCCCCCTCTGGTAAAATGGGCATCCTAGGTAAAAGAAAGCCACAATTGGTATTACTTGACCATGGTTTATACAGGGTGCTTGACCCATTAACACGGGCGCACTATGCTAAGCTTTGGAAGGCTCTTGTGTTTGCAGATGTCAAGGGGATCAAGGAGAATAGTATCAAATTAGGTGCAGGTGAGGATCTCTATGTCCTTTTTGCTGGTGTTCTAACAATGAGGCCATGGCAGAAGGTGCTTGATCCAGCAATCGACCATTTACGTTTGAATGGGACTGATGCTGATCGTGCTGAACTTCAGATGTATGCATCACAATATTTCATGCAAATTTCAGAGCTTTTAAAGAGACTTCCTCGTGTAATTCTACTGCTTCTGAAGACTAATGACTGCTTACGTGCGGTGGATAATGCCCTGGGAGCATCTGTTAACACGTATGTCATCATTGGGAGAGTCTCATCTACGGCAGCTGCGGAGTTACAGTTGTCACAAGGGTCATCTATTTGGTCACGTTTGAGTATTTATTTAGATAAGTTGGAAGTGGAAGTTCGTCTCCTTGCTTTACAAGTTGCTGCTTGTCTAATAAGCCTTCAAAGATTTTTGTGCTCATTTGGTATGAGATATGGGTTCAGAGAGCAGATATTGTAG___TATAGCAGGTATTTATACTTAGTTGTATTTCTGGGGATTCAATTCTTTCCATTGAGGTAAGAACCTTCATGGGGGCATTTTTTTACATGGAATAAGAGGAAACGAATTTCTCTGAAAACATATATGCAATTTTCTGTTGCATGGATTGAAATATAATTTTTTTCAATAGTTTGGTTCAGAAAAAGCATGGTATCTATAACAGTGCCATTCATATCAATAATTTTAAATCATAAGAGAGCAGTGTCTTCTGTCA

Fln Alignment:

Contig7047___RPSDVAKLISQAFAEMIFKHGFVHCDPHAANMMVQVAPSGKMGILGKRKPQLVLLDHGLYRVLDPLTRAHYAKLWKALVFADVKGIKENSIKLGAGEDLYVLFAGVLTMRPWQKVLDPAIDHLRLNGTDADRAELQMYASQYFMQISEXXXXXXXXXXXXXXTNDCLRAVDNAL--GASVNTYVIIGRVSSTAAAELQLSQGSSIWSRLSIYLDKLEVEVRLLALQVAACLISLQRFL
O04212______________QPYEVSKLVSQTFAEMMFKHGFVHCDPHAANLIVRPDPSGKRNIYGKRKPQLVILDHGLYKELDFNTRFNYASLWKALVFSDAKAIKEHSEKLGAGDDLYVLFAGILTMRPWKQVIDTSVDHLVIQGNKEDVSELQMYASQYFSEISELLRRLPRVILLMLKTNDCLRSVNNELMQGSSLESFLIIGKVSSQAVLEAKRAEKKSLMKWLKVWFEGFSVEARLWVMQFALWILQVRKSL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
603		86		13	0.999973
728	85	14			0.993533
772	30		70		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain