SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7036

Length: 863 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7036 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heat shock protein 17.0 n=15 Tax=Picea RepID=Q40851_PICGL	-	-	8.0e-35	62%
FL-Next	tr=Heat shock protein 17.0; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	62%
Sma3	17.5 kDa class II heat shock protein	-	-	3.223e-14	-

Source	Gene names
Sma3	At5g12020; At5g12020/F14F18_190; At5g12030; Dchsp-1; EMB27; EMB29; F14F18_190; F14F18_200; GSVIVT00032232001; GSVIVT00032233001; GSVIVT00032234001; GSVIVT00032235001; GSVIVT00032238001; GSVIVT00032240001; GSVIVT00032241001; GSVIVT00032242001; GSVIVT000322

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	hyperosmotic response	GO:0006972	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G12020.1	HSP17.6II 17.6 kDa class II heat shock protein chr5:3882409-3882876 REVERSE LENGTH=155	3.0e-33	50%
RefSeq	Arabidopsis thaliana	NP_196763.1	heat shock protein 17.6-II [Arabidopsis thaliana]	4.0e-33	50%
RefSeq	Populus trichocarpa	XP_002308537.1	predicted protein [Populus trichocarpa]	3.0e-39	54%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
126			33	66	1.0
127	33			66	1.0
303	25		75		0.996473
492	35		64		1.0
582	77		22		0.999999
640		17	82		1.0
678	7	92			0.999532
689		10		90	0.999898
698			46	53	1.0
735		11	88		0.923564
736	44	11	44		1.0
740			88	11	0.923564
795	60	40			1.0
805		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain