SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7024

Length: 1487 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7024

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleotide-diphospho-sugar transferase-like protein [Arabidopsis thaliana] emb\|CAB87837.1\| putative protein [Arabidopsis thaliana] dbj\|BAF00425.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE79446.1\| nucleotide-diphospho-sugar transferase-like prote	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	At3g55830; F27K19_10; GSVIVT00029249001; OsI_24388; OsJ_22565; P0018H04.8; PHYPADRAFT_213245; POPTRDRAFT_563994; POPTRDRAFT_822406; RCOM_0592150; RCOM_1498510; VITISV_017356; VITISV_038958;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	intrinsic to endoplasmic reticulum membrane	GO:0031227	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	cell-cell adhesion	GO:0016337	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	TonB box, conserved site	IPR010916	-	0.0	-
Sma3	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55830.1	EPC1 Nucleotide-diphospho-sugar transferases superfamily protein chr3:20715101-20717133 FORWARD LENGTH=334	63%
RefSeq	Arabidopsis thaliana	NP_191142.1	nucleotide-diphospho-sugar transferase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002311207.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADK4

Fln msg: Overlapping hits, possible frame ERROR between 524 and 523,

Fln protein: MRVHHRKRSLVKWIRQLLTNMVSFQRKLLLLFCILFALILIVGRAGSFMGWHRHSTELKSPASRGGYTVLINTWRQNSVLKQSVAHYASCSSVDAVRVVWSDTDSPSESLKAYLRKTVRSKAKSNHKPDFRFDLNEEDNLNNRFKPIEGLRTDAIxxSIDDDVVVPCSTLEFAFSVWQSAPDSMVGFVPRMHWVDTKNTDAIRYKYGGWWSVWWMGTYSMVLSKAAFFHQKYLEMYTYHMPASIQEYVSRERDCEDIAMSFLVANATGAPPVWVKGKLFEIGSGGISSLKGHSQRRNKCLNDFVSLYGYMPLVASNFNAVNAQYEWFW*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTGTTATATCCAGATAACAAGGTGCTGTC_-_ATGCGAGTTCATCACAGGAAACGATCCCTCGTGAAATGGATTCGGCAGCTGCTAACCAACATGGTCTCCTTTCAGAGAAAATTGCTCTTATTGTTCTGTATATTATTTGCGCTCATTTTAATTGTGGGCCGCGCTGGTTCCTTCATGGGATGGCACCGCCATTCCACTGAACTCAAATCCCCTGCCTCCAGGGGGGGGTATACAGTACTAATTAATACATGGAGGCAAAATTCAGTTCTCAAGCAATCGGTGGCACATTATGCATCTTGTAGCAGTGTTGATGCAGTACGTGTTGTGTGGAGTGATACTGATTCACCATCAGAATCTCTCAAGGCATATCTCAGGAAGACTGTGCGTTCGAAAGCAAAAAGTAATCACAAACCTGACTTTAGGTTTGACCTGAACGAGGAGGACAATCTCAACAACAGATTTAAACCAATCGAGGGCTTGAGAACAGATGCAATTxxxxxxTCTATTGATGATGATGTTGTAGTTCCATGTTCCACCCTGGAGTTTGCATTTAGTGTGTGGCAAAGCGCTCCAGATAGCATGGTTGGGTTTGTCCCACGCATGCATTGGGTTGATACAAAGAACACTGATGCTATACGTTATAAATATGGTGGCTGGTGGTCTGTTTGGTGGATGGGGACATATAGCATGGTGCTTTCCAAAGCAGCCTTTTTTCATCAAAAGTATTTGGAAATGTATACTTATCACATGCCAGCATCAATTCAAGAATATGTGAGCAGGGAAAGGGATTGCGAAGATATTGCAATGTCTTTCCTTGTTGCAAATGCAACTGGAGCTCCTCCTGTTTGGGTTAAAGGCAAATTATTTGAAATTGGTTCAGGCGGCATTAGTAGCTTGAAAGGACACAGTCAACGGAGAAATAAATGTCTCAATGACTTTGTTTCTCTATATGGTTATATGCCATTGGTTGCCAGTAATTTTAACGCTGTTAATGCTCAATATGAATGGTTTTGGTAG___CTCTGCTTCAATTTCTTATTGCATTCTTGTTATGATCAGATTTTGTGGGCATTTCGTTTATGCCAGGTATTGAAGTATATTACCTGCCTTGATAAAACATCACTGTTCTTTCTGTACCATTGGACTTGAACGAACTTTTAATTTTTCCCGGTTCTTTTGGTGTAGTCCAACCCTATTTTAAAGATAATCAAGTACTGTTACTTCTTGGAAGATGAATTTTGAAGGGTTCATTTGTTGTTACACCTTTTGTTTAGGTTGGAGACAACCTATGTATTTAATCATGTTGAGACTTCATGTTTTGGAAATTCAGTTTCACTCCATATTTTCAACGTCAGTTTGAGTGGTGGGGACTCATCAAACTGTCTAATTATCTCAATACAAATGTATTTGTGCTAAATAGTGTAAAAACGGGTAGGTTCCTGTTGTATGCCTGTATTGGTCTCTCA

Fln Alignment:

Contig7024___MRVHHRKRSLVKWIRQLLTNMVSFQRKXXXXXXXXXXXXXXVGRAGSFMGWHRHSTELKSPASRGGYTVLINTWRQNSVLKQSVAHYASCSSVDAVRVVWSDTDSPSESLKAYLRKTVRSKAKSNHKPDFRFDLNEEDNLNNRFKPIEGLRTDAIxSIDDDVVVPCSTLEFAFSVWQSAPDSMVGFVPRMHWVDTKNTDAIRYKYGGWWSVWWMGTYSMVLSKAAFFHQKYLEMYTYHMPASIQEYVSRERDCEDIAMSFLVANATGAPPVWVKGKLFEIGSGGISSLKGHSQRRNKCLNDFVSLYGYMPLVASNFNAVNAQYEWFW
D5ADK4______________MRVHHRNRSLVKWIRQVLTNIGSLKTKLLLSFCMLFALSLIVGRAGSFMGWHRHSTELKFPSSRGGYTVLINTWRRNSVLKQSVAHYASCSSVDAIRVVWSENNPPSESLKAYLRKSVRSKAKSNHKPDFRFDLNEQDNLNNRFKPIEGLRTDAIxSIDDDVVVPCSTLEFAFSVWQSAPYSMVGFVPRMHWVDTKSADAIRYKYGGWWSVWWMGTYSMVLSKAAFFHQKYLEMYTYHMPASIQEYVSRERNCEDIAMSFLVANATGAPPVWVKGKLFEIGSSGISSLKGHSQRRNECLNDFVSLYGYMPLVASNFNAVNVQYEWFW

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
78		83		16	0.994512
456	16	83			0.994512
458			83	16	0.994512
502		14	85		0.993533
503	14	85			0.993533
526		20		80	0.995493
527		80		20	0.995493
560	16	83			0.994512
561		83		16	0.994512
562		83	16		0.994512
563			16	83	0.994512
649	90		10		0.90298
655		10	90		0.90298
658	90			10	0.90298
659			10	90	0.90298
660	90		10		0.90298
664		10		90	0.90298
685	11			88	0.923564
688	11		88		0.923564
704		90	10		0.90298
705	90		10		0.90298
706			10	90	0.90298
919		10		90	0.90298
1164		60	40		1.0
1304	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain