SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6855

Length: 1432 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6855

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana] gb\|AAD10651.1\| branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana] gb\|ABD59079.1\| At1g55510 [Arabidopsis thaliana] gb\|AEE33256.1\| branched-	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Sma3	Chromosome chr6 scaffold_3, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00024844001;

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55510.1	BCDH BETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit chr1:20723482-20725505 FORWARD LENGTH=352	88%
RefSeq	Arabidopsis thaliana	NP_175947.1	branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002304849.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU2

Fln msg: your sequence is shorter than subject: 359 - 378

Fln protein: MATIARKLGWRRAMSTLSSSSSIQSVNSSIVQSEGKRINLFTAINQALHIALETDPRSYVFGEDVSFGGVFRCTTGLTERFGKHRVFNTPLCEQGIVGFGIGLAAMGNQAIVEIQFADYIYPAFDQIVNEAAKYRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHAPGIKVVIPRSPMQAKGLLLASIRDPNPVLFFEPKWLYRLAVEEVPDHDYTLPLSQAEVIREGTDITLVGWGAQLAIMEQACLDASKEGISCELIDLRTLIPWDKETVEASVRKTGRLLVSHEAPVTGGFGAEIAASVVERCFLRLEAPVARVCGLDTPFPLVFEPFYMPTKNKVLDAIRATVNY*

Protein Length: 360

Fln nts: ATGGGGGCCCAACATTAAACAACCTGACCAGCATTGTAGCGTGGCATAGGTAGAATTCTATTCTCACGCTTGAGGAGAGGTTAGCCCAGATCGTCGAGGAGAAGCGACAGAGGCGACAGGA_-_ATGGCGACGATTGCGAGGAAATTGGGATGGAGGAGGGCGATGAGCACATTGTCTTCATCTTCTTCAATCCAATCTGTGAATTCGTCGATAGTTCAATCAGAGGGGAAGAGAATTAATCTTTTCACGGCCATAAATCAGGCCCTTCACATTGCTCTTGAAACCGATCCTCGGTCTTATGTGTTTGGGGAGGATGTGAGCTTTGGTGGGGTCTTCCGTTGCACAACTGGATTAACAGAGCGATTTGGTAAACATCGAGTTTTTAACACTCCCCTTTGTGAGCAGGGCATTGTTGGATTTGGAATTGGATTGGCTGCAATGGGAAATCAGGCAATAGTGGAAATTCAATTTGCAGATTACATTTACCCTGCATTTGACCAGATTGTTAATGAAGCTGCAAAATATCGATATCGAAGTGGGAATCAATTCAATTGTGGAGGACTTACTATAAGAGCTCCTTACGGTGCTGTTGGCCATGGTGGGCACTATCACTCACAATCACCAGAGGCCTTCTTTTGTCATGCGCCAGGTATCAAGGTTGTTATACCACGGAGCCCAATGCAAGCAAAAGGTTTACTTCTTGCATCAATACGCGATCCAAATCCAGTGCTCTTTTTTGAGCCAAAGTGGCTCTATCGTCTGGCAGTCGAAGAAGTCCCTGACCATGATTATACATTGCCCTTGTCGCAGGCAGAAGTGATTCGGGAAGGGACGGACATCACATTAGTAGGATGGGGAGCTCAGCTTGCAATTATGGAACAAGCTTGTCTGGATGCCAGTAAGGAGGGAATTTCTTGTGAGCTAATAGACTTGCGAACCTTGATTCCATGGGACAAGGAGACAGTTGAGGCATCTGTCAGAAAGACTGGGAGACTTCTTGTTAGTCATGAGGCTCCTGTTACTGGGGGCTTTGGAGCAGAAATTGCTGCCTCTGTTGTGGAACGCTGTTTTCTAAGGTTAGAAGCTCCAGTTGCAAGGGTTTGTGGTCTAGATACTCCATTCCCATTGGTTTTTGAGCCCTTCTACATGCCCACAAAGAATAAGGTCTTAGATGCCATCAGAGCAACTGTAAATTACTAG___CATTGCAGAATCCTTGCATCTGATTTCCCCGTTGTAAAACAAAGCGCTTCTATAGCTGATCTGCGTTCAGATATTTTGCAGAGGGTGCTGTACTTTATACCTGTAACTGACACAAATTAAATGATTAAATGATTTACTTGACAAATATTGAAAATTCAAAGTTCAATTATTGTACATAAAAAAACTGTTGAATATATTGAAAAATATCTTCAAGATCATTGGGGAAGTTTGACC

Fln Alignment:

Contig6855___KRINLFTAINQALHIALETDPRSYVFGEDVS-FGGVFRCTTGLTERFGKHRVFNTPLCEQGIVGFGIGLAAMGNQAIVEIQFADYIYPAFDQIVNEAAKYRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQSPEAFFCHAPGIKVVIPRSPMQAKGLLLASIRDPNPVLFFEPKWLYRLAVE---EVPDHDYTLPLSQAEVIREGTDITLVGWGAQLAIMEQACLDASKEGISCELIDLRTLIPWDKETVEASVRKTGRLLVSHEAPVTGGFGAEIAASVVERCFLRLEAPVARVCGLDTPFPLV--FEPFYMPTKNKVLDAIRAT
B8LPU2______________KEMTVRDALNSAIDEEMSADPKVFLMGEEVGEYQGAYKISKGLLQKFGPDRVLDTPITEAGFTGIGVGAAFYGLRPIVEFMTFNFAMQAIDQIINSAAKTYYMSAGQISVP-IVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLTPYSAEDSRGLMKAAIRDPDPVIFLENELLYGESFPVSAECLDPSFCLPIGKAKIEREGKDVTITAFSKMVGYALQAAQELEKEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGIGAEICTSVVEESFEYLDAPVERITGADIPMPYAANLERLAVP---QVEDIIRAS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
409	20			80	0.995493
670		11	88		0.923564
671	88			11	0.923564
672			87	12	0.992554
674		87	12		0.992554
728		57	42		1.0
1148		88		11	0.923564
1251			11	83	0.999887
1299		81	18		1.0
1384	16			83	0.994512
1416	75		25		0.996473
1419	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain