SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6835

Length: 1975 nt

UniGene Fasta

>sp_v3.0_unigene6835
AGCCACGCTTTATGGGGGAGCCGGTTTTGTTTGGCTTCTGTGGTGTCCCTGATGTCGCCCTTGTTTCCACTTACGCATCCGAATTGAAGTTTTCTACACCAGACAAGTTTCGGCCATGGCAGTCGACCAGTTTCTGCTTGCCTTTCTTCTCTTCTCATTTGGCTTCCTACTCTTTTTCATTACAAGAAATCGAAGCAATCGGCCATACCAAGGTCCTGTAGTATATCCTGTAATTGGTACTCTGTGGGATTTTCTCAAGAACAGGAACAGAGTTCTGGAATGGACAGCGGATGTTCTTTCCAGAATCCCTTCCCACACATTTATGGTGCAGCGCCCGGGAGGTGTACGAGGCATTATCACTGCAAATCCCTCAAACGTGGAGCATATTCTGAGAACTAATTTTCAGAATTACCCCAAGGGAGAACGCTTCAGGTTCTTTCTCCACGATTTCCTGGGCAAGGGGATCTTCAACACTGACGGGGAGCTGTGGAAAATGCAGAGGAAGGTTGCGAGCTACGAATTCAATACCAAGTCGCTCCGGAACATAGTAGTGGAGGCTGTTCAGTGGGAAATCAAGAACAGGCTCATGGTGGTCCTCAAGAACGCATGCGAAGGAAGAGAGAAGATAGACTTGCAGGACGTTCTCATGAGGTTTGCATTCGACAATATCTGCAAGGTTGCGTTCGGCGTCGATCCCGGCTGCCTCCACCCTTGTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGATGCTACTGATATCAGCGCGGGTAGGTTTATTTCCATTGTTCCCTTTCTGTGGAAAATCAAGCGAATGCTTGACATCGGTTCTGAGAAGCGGTTAAGAGAAGCGATAAATGTAGTGAACAAATTTGCCATGGACATTATTCGTTCCAGGAGAAGCGAGATCTCTGAAGGGCATGTCAGGGAAGACCTGCTTTCAAGATTCATGGCGGCAGCTCTGTCTGATTCGGAGCAATTTGAGACAGAATGCGATCAGAAAGATTCTAAGAAATCGGAATTATTCGTCAGAGATATGATGGTTAGTTTTATGATGGCAGGTAGGGATACCACTTCGTCTGCCTTAACTTGGTTTTTCTGGCTGATTTCGTCTCGGCCCCATGTCCGAGAAGCCATTCGCAGAGAAATTTTGGTCGTTACAGGCAGCAGAAATTCCATACAACCCGAAGATGAATGGGTCGTCTTCGGCTTTGATGAACTGAAGGGCATGCAGTATCTCCATGCCGCGCTCTGTGAGTCAATGAGGCTGTGGCCTCCCGTGCCTGTTGATTCAAAGGTTGCTGTGAAAGATGATGTATTGCCAGACGGGACTGCTGTACCCAGAGGATGGTCCGTGAATTACAGTATATATTCAATGGGCAGGATGGAGAGCATTTGGGGTGAGGATTTCATGGAGTTCAGACCCGAGAGATGGCTGAAAGATGGGGAATTTGTGGGGGAAAATCCCTACAAATTTACTGTGTTCCAGGCAGGGCCTCGCATATGTTTGGGAAAAGAGATGGCGTTCATACAGATGAAGTCCATTGTAGCATCTGTCCTTCATAGGTTCAGTCTGGAGGTAGACACCGGATACGTTCCAAAATATGCAATGTGCCTCACTTTGCGCATGAAGAATGGGCTGCCTGTGACAGTGAGAAGTCACTGCGACAGAGATAATATAACTGCCTGATCTCTCCGGGCTGCATGATGTCAAGGGTCAGCCAGGGACAATGTAACTGGAAGGTGCCCTGTAATAACTTCAAGCTATATGAATATTTACATAGACAATTACAGCTTTCTAATTATTTTGGATGGTTGTGCATTTAGGATTTAAATGACATGTCAGACTGTCAGTAAATTTCTGCAGTAAATTTCTGCCGGAGCAATGATCTGATATCATTTTGTTCAATTCTAGGCGTGGATGAAAAGTCGGAAAAAGAAATTAGAGAGGTTCTATTCATAAATAGACGTGTTG

Ace file of the UniGene sp_v3.0_unigene6835

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative cytochrome P450 [Oryza sativa Japonica Group] gb\|EAY89085.1\| hypothetical protein OsI_10573 [Oryza sativa Indica Group]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Cytochrome P450	-	-	1.395e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	4.176e-26	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	4.176e-26	%
Sma3	Steroid hormone biosynthesis	00140	4.176e-26	%
Sma3	Caffeine metabolism	00232	4.176e-26	%
Sma3	Tryptophan metabolism	00380	4.176e-26	%
Sma3	Arachidonic acid metabolism	00590	4.176e-26	%
Sma3	Linoleic acid metabolism	00591	4.176e-26	%
Sma3	Aminobenzoate degradation	00627	4.176e-26	%
Sma3	Retinol metabolism	00830	4.176e-26	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	4.176e-26	%
Sma3	Drug metabolism - cytochrome P450	00982	4.176e-26	%
Sma3	Drug metabolism - other enzymes	00983	4.176e-26	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	4.176e-26	%
Sma3	Metabolic pathways	01100	4.176e-26	%

Source	Gene names
Sma3	A_IG005I10.21; At1g01600; At1g01600/F22L4_10; At1g13150; At1g24540; At1g34540; At1g63710; At1g69500; At1g69500/F10D13_15; At2g27690; At2g27690/F15K20.21; At2g44890; At2g45970; At3g01900; At3g48520; At3g56630; At4g00360; At5g08250; At5g23190; At5g58860; At

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3		GO:0008393	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	suberin biosynthetic process	GO:0010345	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56630.1	CYP94D2 cytochrome P450, family 94, subfamily D, polypeptide 2 chr3:20978953-20980512 FORWARD LENGTH=499	50%
RefSeq	Arabidopsis thaliana	NP_191222.1	cytochrome P450, family 94, subfamily D, polypeptide 2 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002307954.1	cytochrome P450 [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg: your sequence is longer than subject: 525 - 456

Fln protein: MAVDQFLLAFLLFSFGFLLFFITRNRSNRPYQGPVVYPVIGTLWDFLKNRNRVLEWTADVLSRIPSHTFMVQRPGGVRGIITANPSNVEHILRTNFQNYPKGERFRFFLHDFLGKGIFNTDGELWKMQRKVASYEFNTKSLRNIVVEAVQWEIKNRLMVVLKNACEGREKIDLQDVLMRFAFDNICKVAFGVDPGCLHPCLPRSQFAEAFNDATDISAGRFISIVPFLWKIKRMLDIGSEKRLREAINVVNKFAMDIIRSRRSEISEGHVREDLLSRFMAAALSDSEQFETECDQKDSKKSELFVRDMMVSFMMAGRDTTSSALTWFFWLISSRPHVREAIRREILVVTGSRNSIQPEDEWVVFGFDELKGMQYLHAALCESMRLWPPVPVDSKVAVKDDVLPDGTAVPRGWSVNYSIYSMGRMESIWGEDFMEFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVLHRFSLEVDTGYVPKYAMCLTLRMKNGLPVTVRSHCDRDNITA*

Protein Length: 526

Fln nts: AGCCACGCTTTATGGGGGAGCCGGTTTTGTTTGGCTTCTGTGGTGTCCCTGATGTCGCCCTTGTTTCCACTTACGCATCCGAATTGAAGTTTTCTACACCAGACAAGTTTCGGCC_-_ATGGCAGTCGACCAGTTTCTGCTTGCCTTTCTTCTCTTCTCATTTGGCTTCCTACTCTTTTTCATTACAAGAAATCGAAGCAATCGGCCATACCAAGGTCCTGTAGTATATCCTGTAATTGGTACTCTGTGGGATTTTCTCAAGAACAGGAACAGAGTTCTGGAATGGACAGCGGATGTTCTTTCCAGAATCCCTTCCCACACATTTATGGTGCAGCGCCCGGGAGGTGTACGAGGCATTATCACTGCAAATCCCTCAAACGTGGAGCATATTCTGAGAACTAATTTTCAGAATTACCCCAAGGGAGAACGCTTCAGGTTCTTTCTCCACGATTTCCTGGGCAAGGGGATCTTCAACACTGACGGGGAGCTGTGGAAAATGCAGAGGAAGGTTGCGAGCTACGAATTCAATACCAAGTCGCTCCGGAACATAGTAGTGGAGGCTGTTCAGTGGGAAATCAAGAACAGGCTCATGGTGGTCCTCAAGAACGCATGCGAAGGAAGAGAGAAGATAGACTTGCAGGACGTTCTCATGAGGTTTGCATTCGACAATATCTGCAAGGTTGCGTTCGGCGTCGATCCCGGCTGCCTCCACCCTTGTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGATGCTACTGATATCAGCGCGGGTAGGTTTATTTCCATTGTTCCCTTTCTGTGGAAAATCAAGCGAATGCTTGACATCGGTTCTGAGAAGCGGTTAAGAGAAGCGATAAATGTAGTGAACAAATTTGCCATGGACATTATTCGTTCCAGGAGAAGCGAGATCTCTGAAGGGCATGTCAGGGAAGACCTGCTTTCAAGATTCATGGCGGCAGCTCTGTCTGATTCGGAGCAATTTGAGACAGAATGCGATCAGAAAGATTCTAAGAAATCGGAATTATTCGTCAGAGATATGATGGTTAGTTTTATGATGGCAGGTAGGGATACCACTTCGTCTGCCTTAACTTGGTTTTTCTGGCTGATTTCGTCTCGGCCCCATGTCCGAGAAGCCATTCGCAGAGAAATTTTGGTCGTTACAGGCAGCAGAAATTCCATACAACCCGAAGATGAATGGGTCGTCTTCGGCTTTGATGAACTGAAGGGCATGCAGTATCTCCATGCCGCGCTCTGTGAGTCAATGAGGCTGTGGCCTCCCGTGCCTGTTGATTCAAAGGTTGCTGTGAAAGATGATGTATTGCCAGACGGGACTGCTGTACCCAGAGGATGGTCCGTGAATTACAGTATATATTCAATGGGCAGGATGGAGAGCATTTGGGGTGAGGATTTCATGGAGTTCAGACCCGAGAGATGGCTGAAAGATGGGGAATTTGTGGGGGAAAATCCCTACAAATTTACTGTGTTCCAGGCAGGGCCTCGCATATGTTTGGGAAAAGAGATGGCGTTCATACAGATGAAGTCCATTGTAGCATCTGTCCTTCATAGGTTCAGTCTGGAGGTAGACACCGGATACGTTCCAAAATATGCAATGTGCCTCACTTTGCGCATGAAGAATGGGCTGCCTGTGACAGTGAGAAGTCACTGCGACAGAGATAATATAACTGCCTGA___TCTCTCCGGGCTGCATGATGTCAAGGGTCAGCCAGGGACAATGTAACTGGAAGGTGCCCTGTAATAACTTCAAGCTATATGAATATTTACATAGACAATTACAGCTTTCTAATTATTTTGGATGGTTGTGCATTTAGGATTTAAATGACATGTCAGACTGTCAGTAAATTTCTGCAGTAAATTTCTGCCGGAGCAATGATCTGATATCATTTTGTTCAATTCTAGGCGTGGATGAAAAGTCGGAAAAAGAAATTAGAGAGGTTCTATTCATAAATAGACGTGTTG

Fln Alignment:

Contig6835___MVQRPGGVRGIITANPSNVEHILRTNFQNYPKGERFRFFLHDFLGKGIFNTDGELWKMQRKVASYEFNTKSLRNIVVEAVQWEIKNRLMVVLKNACEGREKIDLQDVLMRFAFDNICKVAFGVDPGCLHPCLPRSQFAEAFNDATDISAGRFISIVPFLWKIKRMLDIGSEKRLREAINVVNKFAMDIIRSRRSEISEGHVREDLLSRFMAAALSDSEQFETECDQKD-------SKKSELFVRDMMVSFMMAGRDTTSSALTWFFWLISSRPHVREAIRREILVVTGSRNSI--QPEDEWVVFGFDELKGMQYLHAALCESMRLWPPVPVDSKVAVKDDVLPDGTAVPRGWSVNYSIYSMGRMESIWGEDFMEFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVLHRFSLEVDTGYVPKYAMCLTLRMKNGLPVTVRS
B8LML7______________MIQRPGGVRGIITANPSNVEHILRANFQNYPKGERFSFLLHDFLGRGILNTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMAVLKNACERGEVIELQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFNDATGISAGRFFSSVPFLWRIKKMLDIGSEKRLREAISVVDEFVMDIIRSRRSEISEGHLREDLLSRFMAAAISDLDQLETECDKNGSQKMAMVSEKSELFVRDMMVSFMMAGRDTTSTALTWFFWLISSRPHIQEAIRREILLVKGNRNSITVEPEDQWVVFDFDELKGMQYLHAALCESMRLWPPVPVDTKVAATDDVLPDGTVVPRGWFVSYSIYSMGRMESIWGGDFMDFRPERWLKDGEFVGENPYKFTVFQAGPRICLGKEMAFIQMKSIVASVIHRFSLEVDSEYVPKYAMSITLRMKTGLPVNVKS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
630	83			16	0.994512
672	9		72	18	0.999994
675	88			11	0.923564
676			88	11	0.923564
758			66	33	1.0
767	16		83		0.994512
768	16	83			0.994512
769			83	16	0.994512
771			83	16	0.994512
811			83	16	0.994512
814	83			16	0.994512
863		16	83		0.994512
865			83	16	0.994512
995	16		83		0.994512
998		83	16		0.994512
1072		75		25	0.996473
1105	20		80		0.995493
1108			20	80	0.995493
1567	20		80		0.995493
1627	33	66			1.0
1655	83		16		0.994512
1718		16		83	0.994512
1747		66		33	1.0
1876		25		75	0.996473
1879		75		25	0.996473
1916		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain