SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6808

Length: 2395 nt

UniGene Fasta

>sp_v3.0_unigene6808
CTAGAGCAAAGGCATTGAGCTTGCAGTATTTGTCTCAGATCAGGTGCCAGATATGGTTGTTGGTGACCCTGGGAGATTTCGACAAATCATTACAAATCTTGTTGGAAACTCTGTTAAATTCACAGAGAGAGGTCATATATGTGTATGTGTTCACCTAGCTGAAAATGTGAAGGCTGTAAGGGAGGCCAATGTTGAAGCATTCTCAAAGCAGTTGACAGAAGATAGGAAGCAGAGTTCAAAAAGTTCATGCAACACTTTGAGTGGGTTGAAGCAGCTGATGGGACGAATAGTTGGGAGACCTTTAGGCTCCTACTATCTGATGGAATAATGAATCAGCAGCCTGGCACAATCAATAAGCTGTCCTTTGCTGAAACATCCGACACCGTAAATTTAGTTGTTAGTGTTGAGGATACGGGAGTTGGAATTCCTATACATGCACAAAGGCGTGTCTTTATGCGCTTCATGCAAGCAGACAGTTCTACTTCACGCACATATGGAGGAACAGGCATAGGTTTAAGCATCAGCAAACGTCTGGTGGAGCTTATGAGTGGTGAGATGAGCTTTGAAAGCAAGCCAGCTGTTGGAAGCACATTCACATTCACAGTTGTACTTAAAAAAGCCAATACAAGCCAGGATATAGAGCGACATCAGCCTGAACCCTTACCCACCATTTTCAAAGGAATGAGAGCTGTTGTGGTGGATGGAAGACCTGTTCGAGCTGAAGTAACAAAGTATCATTTGCGGAGGCTTGGTGTGCAAGTTGAAATAGCAAATGACCAGAAATCGGCACTAGCTATAATATCTGGAGGGGAAAATGGTGATATCAGATGCAAAGCAACAGGAAATACAGATATGGTTCTTGTTGATAAGGAAGCATGGGGTCCAGGAACAGGTCTCACATTCCCTCAACTTTTGAGAGAGTCAAGGCTGAGCTCTAAAGCAGGAAGTTGTCGCATGTTACCAAGGATGATTCTTCTTGCTACTTCCATTAATAGCGTAGATTCAGAGAAATCTAAGGCCATTGGATTTGTGGAAACAGTAATCATGAAACCTCTTAGAGCAAGCCTGATCGCAGCATGTCTCCAGCAAGCTTTGGGTATAGGAGATAAAAGACAGCAGGGGAAGGGAGTTATGGATGAATCTCCATCTCTGCACAGTGTTCTATTAGGGAAGAATATTTTGGTAGTAGATGATAACAAAGTGAATAGAAGAGTTGCAGTTGCTGCTTTGAAGAAGTACGGGGCAAAAGTGGAGAATGCAGATAGTGGGAAGGATGCAATAGCAATGCTTCAGCCACCACACAAGTTTGATGCGTGCTTCATGGATGTTCAAATGCCAGAAATGGATGGGTTCGAGGCTACTCGGCAAGTACGTAATATAGAACAACAAATTAATGAGCATATAGAATCAGGAGTTGCTTCTCGTGAGGCATATGGGGATGTTGATAGATGGCATGTACCCATATTGGCAATGACAGCTGATGTAATCCAGGCAACTAATGAGGAGTGCACAAGATGTGGAATGGATGGTTATGTGTCAAAACCCCTCGAAGAAGAACAACTGTACAGAGAAGTAGTTCGTTTTTTGGATACCAAGACGAAACCTACTTAGTGATGAGGATCAGATATTGTTATGATTTTGAAGGTTTAAGTTGCATGTTAAATGAGTTTCCAATGCAGTGCAGAAGGGTTGATGCGTTAAAAGCCCTTTATTGGTCTGGCCTTTGGTAAAAATTATATTACCAACAATGAGCAAACTACGTGTAAATAATCTTCACGAGCTGCAGAGCAGAGAACATGCAAACTCACATTCCCATTGATACTATTATGAGTTGTATTTTAGAATTTCTTTTCGATTCACTTGCAATTGTATGTTGCCCTACATGTGTTAGAGTAGTATCAATTGCGTATCTTTAGACGCCAAAGTTTGGCATGTATAGATCTGCAGGATCCTCAATCTGTTTACTCTGTTGATTGCTTCTTGTATAATAGTCATGACATTGATTCTTTCATGGAGGATAGCATGCAACATGCTTTCCTTCAAGGTCTTAATTAGACATCTAAGAAGTATTGATGTCTAGTCAAATTGGCCTGTATAAATAAACATTTGCAATTGGATCCATGGAGTTTAATGTGATGAGAGCTGATTCCAGTTAATCTGATGGCAAAGTCTTCCATATTTCTTCCTTGCAAGGTTGTGTTTTGAGATAAATTTAAAATTCCCCATACAATATTGGAAGAATCATCTCACATTAGAGACATGATTAGATCTAAATCCCACAGGAAATGTATTTTCTGTCGGTCATTTGAACAATTTCATTGTAATTGAAGAGGCTTTAGTAGGTGGCTCTTCTTAAAAAGATATCCAATACTTTTGATATTTAATATACTTATTC

Ace file of the UniGene sp_v3.0_unigene6808

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Histidine kinase	-	-	2.131e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histidine kinase.	EC:2.7.13.3	-	7.47e-09	-

Source	Gene names
Sma3	AHK2; AHK3; AHK4; At1g27320; At2g01830; At5g35750; B1455F06.33; CKI2e; CKR1; CRE1; CRE1A; CRE1B; CRE2; CRE3; GSVIVT00002792001; GSVIVT00029130001; GSVIVT00030632001; GSVIVT00032433001; HK1; HK2; HK3; HK3A; HK3B; LOC_Os03g50860; LOC_Os10g21810; OHK2; OHK3;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	osmosensor activity	GO:0005034	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cytokinin receptor activity	GO:0009884	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	regulation of seed germination	GO:0010029	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	regulation of chlorophyll catabolic process	GO:0010271	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-
Sma3	regulation of shoot development	GO:0048831	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	CHASE	IPR006189	-	-
Sma3	PAS fold-4	IPR013656	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01830.2	WOL, CRE1, WOL1, AHK4, ATCRE1 CHASE domain containing histidine kinase protein chr2:363332-368016 REVERSE LENGTH=1080	50%
RefSeq	Arabidopsis thaliana	NP_849925.1	histidine kinase 4 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002312478.1	histidine kinase cytokinin receptor [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC19

Fln msg: your sequence is longer than subject: 455 - 252

Fln protein: MQHFEWVEAADGTNSWETFRLLLSDGIMNQQPGTINKLSFAETSDTVNLVVSVEDTGVGIPIHAQRRVFMRFMQADSSTSRTYGGTGIGLSISKRLVELMSGEMSFESKPAVGSTFTFTVVLKKANTSQDIERHQPEPLPTIFKGMRAVVVDGRPVRAEVTKYHLRRLGVQVEIANDQKSALAIISGGENGDIRCKATGNTDMVLVDKEAWGPGTGLTFPQLLRESRLSSKAGSCRMLPRMILLATSINSVDSEKSKAIGFVETVIMKPLRASLIAACLQQALGIGDKRQQGKGVMDESPSLHSVLLGKNILVVDDNKVNRRVAVAALKKYGAKVENADSGKDAIAMLQPPHKFDACFMDVQMPEMDGFEATRQVRNIEQQINEHIESGVASREAYGDVDRWHVPILAMTADVIQATNEECTRCGMDGYVSKPLEEEQLYREVVRFLDTKTKPT*

Protein Length: 456

Fln nts: CTAGAGCAAAGGCATTGAGCTTGCAGTATTTGTCTCAGATCAGGTGCCAGATATGGTTGTTGGTGACCCTGGGAGATTTCGACAAATCATTACAAATCTTGTTGGAAACTCTGTTAAATTCACAGAGAGAGGTCATATATGTGTATGTGTTCACCTAGCTGAAAATGTGAAGGCTGTAAGGGAGGCCAATGTTGAAGCATTCTCAAAGCAGTTGACAGAAGATAGGAAGCAGAGTTCAAAAAGTTC_-_ATGCAACACTTTGAGTGGGTTGAAGCAGCTGATGGGACGAATAGTTGGGAGACCTTTAGGCTCCTACTATCTGATGGAATAATGAATCAGCAGCCTGGCACAATCAATAAGCTGTCCTTTGCTGAAACATCCGACACCGTAAATTTAGTTGTTAGTGTTGAGGATACGGGAGTTGGAATTCCTATACATGCACAAAGGCGTGTCTTTATGCGCTTCATGCAAGCAGACAGTTCTACTTCACGCACATATGGAGGAACAGGCATAGGTTTAAGCATCAGCAAACGTCTGGTGGAGCTTATGAGTGGTGAGATGAGCTTTGAAAGCAAGCCAGCTGTTGGAAGCACATTCACATTCACAGTTGTACTTAAAAAAGCCAATACAAGCCAGGATATAGAGCGACATCAGCCTGAACCCTTACCCACCATTTTCAAAGGAATGAGAGCTGTTGTGGTGGATGGAAGACCTGTTCGAGCTGAAGTAACAAAGTATCATTTGCGGAGGCTTGGTGTGCAAGTTGAAATAGCAAATGACCAGAAATCGGCACTAGCTATAATATCTGGAGGGGAAAATGGTGATATCAGATGCAAAGCAACAGGAAATACAGATATGGTTCTTGTTGATAAGGAAGCATGGGGTCCAGGAACAGGTCTCACATTCCCTCAACTTTTGAGAGAGTCAAGGCTGAGCTCTAAAGCAGGAAGTTGTCGCATGTTACCAAGGATGATTCTTCTTGCTACTTCCATTAATAGCGTAGATTCAGAGAAATCTAAGGCCATTGGATTTGTGGAAACAGTAATCATGAAACCTCTTAGAGCAAGCCTGATCGCAGCATGTCTCCAGCAAGCTTTGGGTATAGGAGATAAAAGACAGCAGGGGAAGGGAGTTATGGATGAATCTCCATCTCTGCACAGTGTTCTATTAGGGAAGAATATTTTGGTAGTAGATGATAACAAAGTGAATAGAAGAGTTGCAGTTGCTGCTTTGAAGAAGTACGGGGCAAAAGTGGAGAATGCAGATAGTGGGAAGGATGCAATAGCAATGCTTCAGCCACCACACAAGTTTGATGCGTGCTTCATGGATGTTCAAATGCCAGAAATGGATGGGTTCGAGGCTACTCGGCAAGTACGTAATATAGAACAACAAATTAATGAGCATATAGAATCAGGAGTTGCTTCTCGTGAGGCATATGGGGATGTTGATAGATGGCATGTACCCATATTGGCAATGACAGCTGATGTAATCCAGGCAACTAATGAGGAGTGCACAAGATGTGGAATGGATGGTTATGTGTCAAAACCCCTCGAAGAAGAACAACTGTACAGAGAAGTAGTTCGTTTTTTGGATACCAAGACGAAACCTACTTAG___TGATGAGGATCAGATATTGTTATGATTTTGAAGGTTTAAGTTGCATGTTAAATGAGTTTCCAATGCAGTGCAGAAGGGTTGATGCGTTAAAAGCCCTTTATTGGTCTGGCCTTTGGTAAAAATTATATTACCAACAATGAGCAAACTACGTGTAAATAATCTTCACGAGCTGCAGAGCAGAGAACATGCAAACTCACATTCCCATTGATACTATTATGAGTTGTATTTTAGAATTTCTTTTCGATTCACTTGCAATTGTATGTTGCCCTACATGTGTTAGAGTAGTATCAATTGCGTATCTTTAGACGCCAAAGTTTGGCATGTATAGATCTGCAGGATCCTCAATCTGTTTACTCTGTTGATTGCTTCTTGTATAATAGTCATGACATTGATTCTTTCATGGAGGATAGCATGCAACATGCTTTCCTTCAAGGTCTTAATTAGACATCTAAGAAGTATTGATGTCTAGTCAAATTGGCCTGTATAAATAAACATTTGCAATTGGATCCATGGAGTTTAATGTGATGAGAGCTGATTCCAGTTAATCTGATGGCAAAGTCTTCCATATTTCTTCCTTGCAAGGTTGTGTTTTGAGATAAATTTAAAATTCCCCATACAATATTGGAAGAATCATCTCACATTAGAGACATGATTAGATCTAAATCCCACAGGAAATGTATTTTCTGTCGGTCATTTGAACAATTTCATTGTAATTGAAGAGGCTTTAGTAGGTGGCTCTTCTTAAAAAGATATCCAATACTTTTGATATTTAATATACTTATTC

Fln Alignment:

Contig6808___KNILVVDDNKVNRRVAVAALKKYGAKVENADSGKDAIAMLQPPHKFDACFMDVQMPEMDGFEATRQVRNIEQQINEHIESGVASREAYGDVDRWHVPILAMTADVIQATNEECTRCGMDGYVSKPLEEEQLYREVVRF
D5AC19______________RRILLVEDTELNRIILGKVLQTLNLHCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSM----------GVKT------------PIVALTGNTLQSDKDLFFEAGVDDFQTKPLSKDRLVQLLARY

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1630	80		20		0.995493
1632		20		80	0.995493
1633	20		80		0.995493
1634		20		80	0.995493
1637		20		80	0.995493
1638	20		80		0.995493
1830	60		40		1.0
1840		11		88	0.923564
1850		11		88	0.923564
1876	20		80		0.999996
1877	10			90	0.90298
1881		88		11	0.923564
1958	88		11		0.923564
2071		25		75	0.996473
2155	20		80		0.995493
2156			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain