SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6647

Length: 2492 nt

UniGene Fasta

>sp_v3.0_unigene6647
AGAGTAGTAGTACAACCTGAAGTGGAGTGGATAGATCAGCTCAGGGACAGACAGAGCTCTCAGCCTATCCTTACAACTTAGGCCAGGCTAATCAGGTACAAATAGCTATTTATTGCTGTCAGTGTGGAGAATTAGAATGGCAGTGGACAGATCATTGGAAGTGAGCAAAGAGGAGGAGGGGAAAGAAAATTCACCAGTGGAGCAGGTGGCATTCACTGTGAGTACAGAAGACGATCCAACCATTCCTGTATGGACATTTCGAATGTGGTTTCTGGGGCTGTTTTCATGCATCCTGCTCTCATTTTTGAACCAGTTCTTCAGTTACAGGAGGGAGCCACTTATCATCACACAGATTTCAGTGCAGGTGGCAGCCCTTCCCCTTGGGCGTTCCATGGCCTCGGCTCTGCCAAAGAGGAGATTCAGAGTGCCTCTGTTGGGGAAGGAGGTGTCCCTGAATCCAGGGCCCTTTAATATGAAGGAGCATGTGCTCATTACAATCTTTGCCAGTGCAGGCTACGCATTCGGCAATGGATCCGCCTACGCGGTGGGCATTGTCAACATCATTAAGGCGTTTTACATGAGGAATATCAGTTTTCTGGTAGCTTGGCTGATCATAATTACAACTCAGGTGTTAGGATATGGATGGGCTGGACTGCTTCGTAAGTATGTTGTAGAACCTGCACACATGTGGTGGCCGAGCACACTGGTCCAGGTGACCCTGTTCCGGGTACTGCATGAGAAAGACCATGGAAAGGGGATGTCTCGTAATACATTCTTCTTCATTACCATGACCTGCAGCTTTTGCTATTATGTATTCCCTGGTTATCTTTTCTCAACTCTGTCCTGCGTATCGTGGGTATGTTGGATTTGGCCTCGCTCTGTCACAGCACATCAGATTGGCTCTGGTTTGAAAGGCCTTGGACTTGGTGCCTTTGGTTTCGATTGGAGCACGATTGCAGCCTTCTTGTTCAGCCCCCTTATTTCTCCATTCTTTGCCATTATGAATGTCTTGGCTGGTTATCTCCTCGTAGTATACTTGACCGCCCCTCTTGCTTATTGGGGCGCTAACCTGTACAATGCAAAGACTTTTCCTATTTTCAGCTCGGATTTGTTCACTGCCCAGGGGGAGAAGTATAATATTTCACAGATTGTGAACAATAAATTCGAGCTGGATCTTCCTGCTTACAATCAGAATGGTCAAATACATTTAAGTTTGTTTTTCGCTCTGACTTATGGGTTCGGATTTGCGACTATTGCTTCTACAGTCACCCATGTCTTTCTGTTCTATGGGAAGGAAATATGGGAGCGTACGGTTGCAACATCAAAAAATAATCGGCCTGATATTCATACTAAATTGATGCGCAAGTACCCAGATATCCCACAATGGTGGTTCTACACTCTCTTGTGTGGGACTCTGGCTGTTTCCTTGGCACTTTGTGGGTTTTTCAAGGAAGAGGTGCAGCTACCATGGTGGGGCTTACTCTTTGCCTGTGCTCTCGCTTCATTTTTCACTCTCCCCATAAGTATCATCACTGCTACTACTAACCAGACACCAGGCTTGAACATTATCACCGAATACCTAATGGGATATATCCTTCCTGGGAAGCCTATTGCCAATGTTTGCTTCAAGGTCTATGGATACATGAGTATGAGCCAGGCAGTTTCTTTCTTGTCAGACTTCAAGCTCGGCCATTACATGAAAATCCCCCCTCGATCTATGTTCCTTGTACAGTTTATAGGCACAATAGTGGCTGGAACAGTCAACCTGGGAGTTGCATGGTGGATGTTGGGATCAGTGAAAGATATATGCCAAGCAGATCTTTTGGCTGCAGATAGCCCATGGACATGTCCTGGTGATCGTGTGTTTTTGATGCATCAGTCATATGGGGTTTGGTTGGTCCCAAGAGGATATTTGGCAAGCTTGGAGTGTATCCCCAGTTAAATTGGTTCTTCTTGGGTGGGGCAGCTGCTCCAGTTATAGTGTGGTTGGCACACAAGGCATTTCCAAATGTCAAATGGATTCCTCTGATCAACATGCCAGTTATGTTGGGATCTACAGCTATGATGCCTCCAGCCACTGCAGTCAATTACACATCTTGGATAACCGTTGGGACCATCTTCAACTATTTTATATTTAAATATCACAAGGCTTGGTGGCACCGCTACAATTATGTGCTCTCTGCAGGCCTGGATGCTGGTTTGGCCTTTATGGCTATACTACTATACTTTACATTGGGTCTTAACAACATATCCATAAACTGGTGGGGAGCAGGAGGGGAGCATTGTGGTTTGGCAAGTTGCCCCACTGCTAAGGGTGTCAAGGTGGATGGTTGCCCTGTTTATTAATTCTGATCTTTGATGTTTGCTGCTTTGTGCAGGTCTGATTTTCATGTTCAGACTTATGTACGTTGTATACATGTTATTTCACCTCAAGTATGTATATGCACACTTAATTTTCTATCATATATTTAACCCAAGAAGCATACACTCTC

Ace file of the UniGene sp_v3.0_unigene6647

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter OPT family n=2 Tax=Populus trichocarpa RepID=B9HN76_POPTR	-	-	0.0	69%
FL-Next	sp=Oligopeptide transporter 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Oligopeptide transporter OPT family	-	-	1.547e-30	-

Source	Gene names
Sma3	12.t00046; At1g09930; At4g10770; At4g16370; At4g26590; At4g27730; At5g53510; At5g53520; At5g55930; At5g64410; B1053A04.20-1; B1053A04.20-2; F21M12.32; FCAALL.72; GSVIVT00000539001; GSVIVT00004656001; GSVIVT00004853001; GSVIVT00005733001; GSVIVT00008167001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	-
Sma3	oligopeptide transporter activity	GO:0015198	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Nop2p	IPR011023	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	IPR018314	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G64410.1	ATOPT4, OPT4 oligopeptide transporter 4 chr5:25750921-25754974 REVERSE LENGTH=729	70%
RefSeq	Arabidopsis thaliana	NP_201246.1	oligopeptide transporter 4 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002313213.1	oligopeptide transporter OPT family [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FME8

Fln msg: Overlapping hits, possible frame ERROR between 1867 and 1867,

Fln protein: MAVDRSLEVSKEEEGKENSPVEQVAFTVSTEDDPTIPVWTFRMWFLGLFSCILLSFLNQFFSYRREPLIITQISVQVAALPLGRSMASALPKRRFRVPLLGKEVSLNPGPFNMKEHVLITIFASAGYAFGNGSAYAVGIVNIIKAFYMRNISFLVAWLIIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVTLFRVLHEKDHGKGMSRNTFFFITMTCSFCYYVFPGYLFSTLSCVSWVCWIWPRSVTAHQIGSGLKGLGLGAFGFDWSTIAAFLFSPLISPFFAIMNVLAGYLLVVYLTAPLAYWGANLYNAKTFPIFSSDLFTAQGEKYNISQIVNNKFELDLPAYNQNGQIHLSLFFALTYGFGFATIASTVTHVFLFYGKEIWERTVATSKNNRPDIHTKLMRKYPDIPQWWFYTLLCGTLAVSLALCGFFKEEVQLPWWGLLFACALASFFTLPISIITATTNQTPGLNIITEYLMGYILPGKPIANVCFKVYGYMSMSQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTIVAGTVNLGVAWWMLGSVKDICQADLLAADSPWTCPGDRVxxDASVIWGLVGPKRIFGKLGVYPQLNWFFLGGAAAPVIVWLAHKAFPNVKWIPLINMPVMLGSTAMMPPATAVNYTSWITVGTIFNYFIFKYHKAWWHRYNYVLSAGLDAGLAFMAILLYFTLGLNNISINWWGAGGEHCGLASCPTAKGVKVDGCPVY*

Protein Length: 738

Fln nts: AGAGTAGTAGTACAACCTGAAGTGGAGTGGATAGATCAGCTCAGGGACAGACAGAGCTCTCAGCCTATCCTTACAACTTAGGCCAGGCTAATCAGGTACAAATAGCTATTTATTGCTGTCAGTGTGGAGAATTAGA_-_ATGGCAGTGGACAGATCATTGGAAGTGAGCAAAGAGGAGGAGGGGAAAGAAAATTCACCAGTGGAGCAGGTGGCATTCACTGTGAGTACAGAAGACGATCCAACCATTCCTGTATGGACATTTCGAATGTGGTTTCTGGGGCTGTTTTCATGCATCCTGCTCTCATTTTTGAACCAGTTCTTCAGTTACAGGAGGGAGCCACTTATCATCACACAGATTTCAGTGCAGGTGGCAGCCCTTCCCCTTGGGCGTTCCATGGCCTCGGCTCTGCCAAAGAGGAGATTCAGAGTGCCTCTGTTGGGGAAGGAGGTGTCCCTGAATCCAGGGCCCTTTAATATGAAGGAGCATGTGCTCATTACAATCTTTGCCAGTGCAGGCTACGCATTCGGCAATGGATCCGCCTACGCGGTGGGCATTGTCAACATCATTAAGGCGTTTTACATGAGGAATATCAGTTTTCTGGTAGCTTGGCTGATCATAATTACAACTCAGGTGTTAGGATATGGATGGGCTGGACTGCTTCGTAAGTATGTTGTAGAACCTGCACACATGTGGTGGCCGAGCACACTGGTCCAGGTGACCCTGTTCCGGGTACTGCATGAGAAAGACCATGGAAAGGGGATGTCTCGTAATACATTCTTCTTCATTACCATGACCTGCAGCTTTTGCTATTATGTATTCCCTGGTTATCTTTTCTCAACTCTGTCCTGCGTATCGTGGGTATGTTGGATTTGGCCTCGCTCTGTCACAGCACATCAGATTGGCTCTGGTTTGAAAGGCCTTGGACTTGGTGCCTTTGGTTTCGATTGGAGCACGATTGCAGCCTTCTTGTTCAGCCCCCTTATTTCTCCATTCTTTGCCATTATGAATGTCTTGGCTGGTTATCTCCTCGTAGTATACTTGACCGCCCCTCTTGCTTATTGGGGCGCTAACCTGTACAATGCAAAGACTTTTCCTATTTTCAGCTCGGATTTGTTCACTGCCCAGGGGGAGAAGTATAATATTTCACAGATTGTGAACAATAAATTCGAGCTGGATCTTCCTGCTTACAATCAGAATGGTCAAATACATTTAAGTTTGTTTTTCGCTCTGACTTATGGGTTCGGATTTGCGACTATTGCTTCTACAGTCACCCATGTCTTTCTGTTCTATGGGAAGGAAATATGGGAGCGTACGGTTGCAACATCAAAAAATAATCGGCCTGATATTCATACTAAATTGATGCGCAAGTACCCAGATATCCCACAATGGTGGTTCTACACTCTCTTGTGTGGGACTCTGGCTGTTTCCTTGGCACTTTGTGGGTTTTTCAAGGAAGAGGTGCAGCTACCATGGTGGGGCTTACTCTTTGCCTGTGCTCTCGCTTCATTTTTCACTCTCCCCATAAGTATCATCACTGCTACTACTAACCAGACACCAGGCTTGAACATTATCACCGAATACCTAATGGGATATATCCTTCCTGGGAAGCCTATTGCCAATGTTTGCTTCAAGGTCTATGGATACATGAGTATGAGCCAGGCAGTTTCTTTCTTGTCAGACTTCAAGCTCGGCCATTACATGAAAATCCCCCCTCGATCTATGTTCCTTGTACAGTTTATAGGCACAATAGTGGCTGGAACAGTCAACCTGGGAGTTGCATGGTGGATGTTGGGATCAGTGAAAGATATATGCCAAGCAGATCTTTTGGCTGCAGATAGCCCATGGACATGTCCTGGTGATCGTGTGxxxxxxGATGCATCAGTCATATGGGGTTTGGTTGGTCCCAAGAGGATATTTGGCAAGCTTGGAGTGTATCCCCAGTTAAATTGGTTCTTCTTGGGTGGGGCAGCTGCTCCAGTTATAGTGTGGTTGGCACACAAGGCATTTCCAAATGTCAAATGGATTCCTCTGATCAACATGCCAGTTATGTTGGGATCTACAGCTATGATGCCTCCAGCCACTGCAGTCAATTACACATCTTGGATAACCGTTGGGACCATCTTCAACTATTTTATATTTAAATATCACAAGGCTTGGTGGCACCGCTACAATTATGTGCTCTCTGCAGGCCTGGATGCTGGTTTGGCCTTTATGGCTATACTACTATACTTTACATTGGGTCTTAACAACATATCCATAAACTGGTGGGGAGCAGGAGGGGAGCATTGTGGTTTGGCAAGTTGCCCCACTGCTAAGGGTGTCAAGGTGGATGGTTGCCCTGTTTATTAA___TTCTGATCTTTGATGTTTGCTGCTTTGTGCAGGTCTGATTTTCATGTTCAGACTTATGTACGTTGTATACATGTTATTTCACCTCAAGTATGTATATGCACACTTAATTTTCTATCATATATTTAACCCAAGAAGCATACACTCTC

Fln Alignment:

Contig6647___LEVSKEEEGKENSPVEQVAFTVSTEDDPTIPVWTFRMWFLGLFSCILLSFLNQFFSYRREPLIITQISVQVAALPLGRSMASALPKRRFRVPLLGK-EVSLNPGPFNMKEHVLITIFASAGYAFGNGSAYAVGIVNIIKAFYMRNISFLVAWLIIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVTLFRVLHEKDHGKGMSRNTFFFITMTCSFCYYVFPGYLFSTLSCVSWVCWIWPRSVTAHQIXXXXXXXXXXXXXFDWSTIAAFLFSPLISPFFAIMNVLAGYLLVVYLTAPLAYWGANLYNAKTFPIFSSDLFTAQGEKYNISQIVNNKFELDLPAYNQNGQIHLSLFFALTYGFGFATIASTVTHVFLFYGKEIWERTVATSKNNRPDIHTKLMRKYPDIPQWWFYTLLCGTLAVSLALCGFFKEEVQLPWWGLLFACALASFFTLPISIITATTNQTPGLNIITEYLMGYILPGKPIANVCFKVYGYMSMSQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTIVAGTVNLGVAWWMLGSVKDICQADLLAADSPWTCPGDRVFFDASVIWGLVGPKRIFGKLGVYPQLNWFFLGGAAAPVIVWLAHKAFPNVKWIPLINMPVMLGSTAMMPPATAVNYTSWITVGTIFNYFIFKYHKAWWHRYNYVLSAGLDAGLAFMAILLYFTLGLNNISINWWGAGGEHCGLASCPTAKGVKVDGCPV
Q9FME8______________MATADEFSDEDTSPIEEVRLTVTNTDDPTLPVWTFRMWFLGLISCSLLSFLNQFFSYRTEPLVITQITVQVATLPIGHFLAKVLPKTRFGLPGCGSARFSLNPGPFNMKEHVLISIFANAGSAFGSGSAYAVGIITIIKAFYGRSISFIAGWLLIITTQVLGYGWAGLLRKYVVEPAHMWWPSTLVQVSLFRALHEKDDQR-MTRAKFFVIALVCSFGWYIVPGYLFTTLTSISWVCWAFPRSVTAQQIGSGMRGLGLGAFTLDWTAVASFLFSPLISPFFAIANVFIGYVLLIYFVLPLAYWGFDSYNATRFPIFSSHLFTSVGNTYDIPAIVNDNFELDLAKYEQQGRINLSMFFALTYGLGFATIASTLTHVALFYGKEISER-FRVSYKGKEDIHTRLMKRYKDIPSWWFYSMLAATLLISLALCVFLNDEVQMPWWGLVFASAMAFVFTLPISIITATTNQTPGLNIITEYAMGLIYPGRPIANVCFKVYGYMSMAQAVSFLNDFKLGHYMKIPPRSMFLVQFIGTILAGTINITVAWWQLNSIKNICQEELLPPNSPWTCPGDRVFFDASVIWGLVGPKRIFGSQGNYAAMNWFFLGGALGPVIVWSLHKAFPKRSWIPLVNLPVLLGATAMMPPATAVNYNSWILVGTIFNLFVFRYRKSWWQRYNYVLSAAMDAGVAFMAVLLYFSVGMEEKSLDWWGTRGEHCDLAKCPTARGVIVDGCPV

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1357	87			12	0.992554
1417	12			87	0.992554
1460		12	87		0.992554
1490	14		85		0.993533
1492	14	85			0.993533
1494			85	14	0.993533
1662	33	66			0.997452
1878	25	75			0.996473
1881		75	25		0.996473
1882	75			25	0.996473
1946	83			16	0.994512
1947	83		16		0.994512
1948			16	83	0.994512
1949			16	83	0.994512
1972	20			80	0.995493
1974		80		20	0.995493
1975	20			80	0.995493
1976	20	80			0.995493
1980			20	80	0.995493
1981			25	75	0.996473
2001	75			25	0.996473
2185		14		85	0.993533
2218			25	75	1.0
2222		87		12	0.992554
2232		12		87	0.992554
2240		12	87		0.992554
2253		25		75	1.0
2292		50	50		1.0
2293		25		75	0.996473
2329			40	60	1.0
2341		25		75	0.996473
2358	20	80			0.995493
2369	25		75		0.996473
2377			75	25	0.996473
2412	14		71	14	0.984337
2428		33		66	1.0
2433		80		20	0.995493
2438		20	80		0.995493
2442			80	20	0.995493
2449		20	80		0.995493
2450		80		20	0.995493
2468	66			33	0.997452
2479		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain