SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6639

Length: 1780 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6639

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana] dbj\|BAB10956.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK83641.1\| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb\|AAM26724.1\| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb\|AED98315.1\| tRNA-dihy	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein Sb10g029830; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	69%

Source	Gene names
Sma3	At5g67220; CHLREDRAFT_114939; GSVIVT00019548001; MICPUCDRAFT_57858; MICPUN_82497; OJ1663_H12.36; OSTLU_3755; Os06g0712900; OsI_24443; OsJ_22639; Ot08g00950; P0712G01.11; PHATRDRAFT_3015; PHATRDRAFT_4048; PHATRDRAFT_4049; PHYPADRAFT_149014; PHYPADRAFT_4462

Source	GOs	Term	Type	Identity
Sma3	tRNA dihydrouridine synthase activity	GO:0017150	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	tRNA-dihydrouridine synthase, conserved site	IPR018517	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67220.1	FMN-linked oxidoreductases superfamily protein chr5:26820276-26821926 REVERSE LENGTH=423	59%
RefSeq	Arabidopsis thaliana	NP_201523.1	tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002310123.1	predicted protein, partial [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C5Z1S4

Fln msg: your sequence is longer than subject: 488 - 421

Fln protein: MGTTLTRWPSMKTRPSIARLSSISSIDNRNSHGPTFPLLPWILRRFHFSSSSVVPMTKEASEDADNVLCSRVADFTLSESPHSSSEDAAEDTFEAIDCSVLSTLVDSEHSLPDSSDGCMADGSLIERAWRHWRKLGEPKLIVAPMVDQSELPFRMLCRKYGATAAYTPMLHARLFAENPKYHKLEFTTCKEDRPLFVQFCANDPEKLLAAAQLVQHCCDYVDINLGCPQRIAKRGNYGAFLMDNLPLVESLVKNLASNLSVPVSCKIRMFQSLEDTIAYAKMLEAAGCSLLAVHGRTRDQKDGKSIRADWAVINAVKKALRIPVLANGNIRYLEDVYDCLRETGADGVLSAESILENPALFAGYRLMADWEDNSSSQAEEVLEKYERVKHTEHELKNPFNQATLVLEYFDLCEKYPVPWRMVRAHVHRMLGDWFRIYPDLRQELNKQSKLTFEWLRDMVHQLMERDIKLVLRPSTPCEKLMYKASSC*

Protein Length: 489

Fln nts: _-_ATGGGGACTACGCTAACTAGATGGCCCTCAATGAAGACAAGGCCTTCTATCGCACGACTTTCATCAATTTCAAGCATAGATAATCGAAATTCTCATGGCCCGACATTTCCTCTGCTTCCTTGGATATTAAGACGATTTCACTTCTCCTCTTCCTCTGTTGTTCCAATGACAAAAGAGGCCTCGGAGGACGCAGACAACGTCCTGTGTTCGAGAGTCGCTGACTTCACTCTTTCCGAATCACCACATAGTTCTTCAGAGGATGCAGCTGAAGATACCTTTGAAGCCATAGATTGTTCAGTCCTCTCCACTCTTGTGGACTCTGAACACTCCTTACCTGATTCAAGCGATGGATGTATGGCAGATGGGTCTCTGATAGAAAGGGCGTGGAGGCATTGGAGGAAGCTAGGGGAACCCAAATTGATAGTGGCACCCATGGTTGATCAATCCGAACTTCCATTCAGAATGCTCTGCAGAAAGTACGGGGCCACTGCTGCTTACACACCCATGTTGCATGCTCGCCTTTTTGCAGAAAATCCCAAATATCATAAGCTTGAATTCACCACATGTAAGGAAGATCGTCCTTTGTTTGTGCAATTTTGTGCAAACGACCCTGAAAAACTATTGGCTGCAGCTCAGCTTGTTCAACATTGTTGTGATTATGTTGATATCAATTTGGGGTGCCCACAACGCATTGCCAAACGAGGTAATTATGGAGCATTTTTGATGGACAACTTGCCACTTGTGGAATCCTTAGTTAAAAATCTGGCTTCTAACTTATCTGTGCCTGTATCATGTAAGATTCGGATGTTTCAATCCCTTGAGGACACTATAGCATATGCCAAAATGCTTGAGGCTGCAGGATGCTCACTTCTTGCTGTTCATGGACGCACCAGGGATCAGAAAGATGGGAAAAGCATTAGAGCAGATTGGGCTGTAATTAATGCTGTCAAGAAGGCTCTTAGAATTCCTGTTTTGGCAAATGGAAATATAAGATATTTAGAAGATGTCTATGATTGTTTAAGAGAGACTGGTGCAGATGGAGTTTTGTCAGCTGAATCCATACTGGAAAATCCTGCACTTTTTGCAGGGTATCGATTAATGGCAGACTGGGAAGATAATTCAAGCTCCCAGGCAGAAGAGGTGCTAGAAAAATATGAGAGAGTGAAGCATACTGAACATGAACTTAAAAATCCATTCAATCAGGCAACTCTGGTGTTGGAATACTTCGATCTTTGTGAGAAATATCCAGTTCCATGGCGAATGGTTCGAGCCCACGTGCACCGAATGTTAGGTGACTGGTTCAGGATTTATCCAGATCTACGTCAGGAACTCAACAAACAGTCTAAGTTGACATTCGAGTGGCTTCGAGATATGGTGCATCAGCTGATGGAACGTGATATCAAACTTGTCCTTCGTCCATCAACACCATGTGAAAAGCTGATGTACAAAGCATCTTCCTGTTGA___GTATTGGAACTGTTATTCGAATGATTCAAATGCTGCAAACCTCACCTGAAGTCTTTCCATGAGTGGGATGAGCAATAACATCTGCAATGATGGACTCTAAGCATGGAAGTTCACTCTTTCATATTGGGTTAGTTTATTCCTAAAGCCTCCCTTAATTTACAGGGGCTATTAAAATGTTCTCTTGTACGTTCATGCTATCATTAACATTTGTTGAAGCTAATGTCATTATAAAGCTGTTATTGGCTGTTGCGGCAGGCTTGCAATTTCTGGGTTGACAGGATATACAATGGTTCTGTTGTCTACAAGTTCGACAGAT

Fln Alignment:

Contig6639___IERAWRHWRKLGEPKLIVAPMVDQSELPFRMLCRKYGATAAYTPMLHARLFAENPKYHKLEFTTCKEDRPLFVQFCANDPEKLLAAAQLVQHCCDYVDINLGCPQRIAKRGNYGAFLMDNLPLVESLVKNLASNLSVPVSCKIRMFQSLEDTIAYAKMLEAAGCSLLAVHGRTRDQKDGKSIRADWAVINAVKKALRIPVLANGNIRYLEDVYDCLRETGADGVLSAESILENPALFAGYRLMADWEDNSSSQAEEVLEKYERVKHTEHELKNPFNQATLVLEYFDLCEKYPVPWRMVRAHVHRMLGDWFRIYPDLRQELNKQSKLTFEWLRDMVHQLME
C5Z1S4______________VERAWAHWRRLGSPRLLVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKYRSMEFTTCKEDRPLFVQFCANDPDILLQAAKMVEPHCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLVQNLAANLHVPVSVKIRVFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAIKAVKDALRVPVLANGNIRHMEDVKNCLEHTGADGVLSAETLLENPALFAGFR-TKEWKEDSDENGDSGLD-----------------QADLVIEYLKLCEQYPVPWRMVRSHVHKMLGDWFRVHPEVREELNKQNKLTFEWLHDMVMRLKE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1214	14		85		0.993533
1217			14	85	0.993533
1218			14	85	0.993533
1420	80			20	1.0
1576	14		14	71	0.984337
1768	33		66		0.997452
1769		66	33		0.997452
1770	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain