SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6614

Length: 1755 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6614 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor bHLH62 n=1 Tax=Arabidopsis thaliana RepID=BH062_ARATH	-	-	7.0e-31	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	BHLH transcription factor	-	-	1.22e-14	-

Source	Gene names
Sma3	24.t00060; AP22.3; AT1G68920; At1g03040; At1g10120; At1g18400; At1g25330; At1g26260; At1g59640; At1g68920; At1g73830; At2g18300; At2g24260; At2g42300; At3g07340; At3g23690; At4g30980; At4g34530; At4g36540; At5g50915; At5g62610; B21F5.2; BEE1; BEE2; BEE3;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	petal morphogenesis	GO:0048446	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3		IPR001092	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59640.2	ZCW32, BPE, BPEp BIG PETAL P chr1:21909635-21911030 REVERSE LENGTH=343	6.0e-36	60%
RefSeq	Arabidopsis thaliana	NP_564749.1	transcription factor BPE [Arabidopsis thaliana]	5.0e-36	59%
RefSeq	Populus trichocarpa	XP_002321546.1	predicted protein, partial [Populus trichocarpa]	5.0e-35	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB25

Fln msg: your sequence is longer than subject: 376 - 222

Fln protein: MANFSGHYEASITDSVGIRGQISDFQDQKSHQYDISKYLADRQYIEFSPEDGLISSDYCPSITTQATNLNPPVLNTTHAAYNGILHWHESSVQSIGLQQIIDPVIINEEHIAPAFYGSSVAERAVYTETKSIVSEEREDYEASHLHKLTLGNVENEHVLTDKDMCSGKPLTYRGEGHTASAKMKKRKTDQYAYGSVMETYVRVSGQKGPLKKSKGHKHKSSQSSGISKDQEQNANPKLDIIRGDPPELLTNNVMDKPKDEPQKDYIHLRTRRGQATDSHSLAERVRREKISERMRVLQDLVPGCNKVTGKALVLETIINYVQSLQYQVEILSGKLTSVLSRCHFDLPVNGHPAKEVEDIHGSLMYYKQDILKGCQ*

Protein Length: 377

Fln nts: AGTAACAATAGGGGGAATTTGTACGTGGGTAGAGTGAGAAGACCAGACGTATTAATTTCAGTTGTTTCCCAGCGACTTCCTTTAGTACTAGTTATGTTTGGTGTCTCGGAACAGTGGGCCACATTACAAGTGGTTCTGTAAGTTACAGTAAGTTGCAGGTTTTGATAAATGTGGAAGTACAATGATAGGAACAAGTCGTTTTAGTGCACTACAATAATACAGCCAGTGTCGCCGGTGGTGGATTCAGCTTTAATATAGAATTTGCCAGAAAGAGCGACCTGTTGATTCATGGCCAGGTCGCTGATCTCTGCACTCTGAAGCAGGGTACTGTGATTTCAGATTTCTTCAGCATTATTAGCAGTTGATGAAATTGTTATGAGACTTATCACTGTTCACTTGCTTCAATTAGTTTGTTTTGAGAAATTACAGATCA_-_ATGGCAAACTTTTCTGGTCATTATGAGGCTTCTATTACTGACTCCGTTGGGATTAGAGGCCAGATCTCTGATTTTCAGGATCAAAAATCTCATCAGTACGATATTAGTAAGTATCTTGCTGATCGGCAATATATCGAGTTTTCTCCCGAGGATGGGCTGATCAGCTCTGATTATTGCCCAAGTATAACAACCCAGGCTACTAACCTGAACCCTCCTGTTCTTAATACTACTCATGCTGCTTACAATGGGATACTGCATTGGCATGAGTCAAGCGTCCAGTCCATAGGGTTGCAGCAGATCATCGATCCCGTTATAATCAACGAGGAGCACATAGCTCCAGCATTCTATGGTTCATCTGTTGCCGAAAGGGCGGTGTATACTGAGACTAAAAGCATTGTGAGCGAAGAAAGAGAGGATTATGAAGCCAGTCATCTCCATAAACTTACGCTAGGTAATGTGGAGAATGAACATGTACTGACAGATAAAGATATGTGTTCTGGTAAACCCTTAACGTATAGAGGCGAAGGGCATACAGCCTCTGCAAAGATGAAGAAAAGAAAAACCGATCAATATGCCTATGGAAGTGTTATGGAGACATATGTTCGGGTTTCAGGTCAGAAGGGACCCCTCAAGAAATCGAAAGGGCATAAACACAAATCTTCGCAAAGTTCAGGCATTTCCAAAGATCAGGAACAGAATGCAAACCCTAAGTTAGATATTATTAGAGGTGACCCTCCTGAATTACTTACCAATAATGTCATGGACAAACCAAAGGATGAGCCTCAAAAGGATTACATCCACCTTAGAACAAGAAGAGGTCAGGCTACAGACAGTCATAGCCTCGCAGAAAGGGTCAGAAGGGAGAAGATAAGTGAGCGAATGAGAGTGTTACAGGATCTTGTTCCAGGCTGCAACAAGGTTACAGGCAAAGCACTTGTGCTGGAGACAATCATCAACTATGTGCAGTCCTTGCAGTATCAAGTGGAGATTCTTTCAGGGAAGCTCACTTCTGTTCTTTCTCGCTGTCATTTTGACCTTCCAGTCAATGGTCACCCAGCTAAAGAGGTTGAGGACATTCATGGCAGCTTAATGTACTACAAACAGGATATATTGAAAGGATGCCAGTGA___CTGAATATTATAGTTGAAATTTCTCTAATGATTTCAACCTTGAGGTGAACTATAATACTTCTTTGCAAGGCGTTCCGTTTAATATGTTCAAGATTTTAATCTAAGTATGTTCCAGCTTTGACTTATTGTTTTGACACAACATTATATTATACGCTATTTTTGGAAATTTAATTCGTGGACATTGCATTGACTTC

Fln Alignment:

Contig6614___LTDKDMCSGKPLTYRGEG--HTASAKMKKRKTDQYAYGSVMETYVRVSGQKGPLXXXXXXXXXXXXXXXXXKDQEQNANPKLDIIRGDPPELLTNNVMDKPKDEPQKDYIHLRTRRGQATDSHSLAERVRREKISERMRVLQDLVPGCNKVTGKALVLETIINYVQSLQYQVEILSGKLTSVLSRCHFDLPVNGHPAK-------EVEDIHGSLMYYKQ
D5AB25______________MTDQNMCVDKPLTYRGKGKGHRAPGNMNKRKTDQYANGSFMETYVQVSAQKGSVKKSRGDRHKSSQSSSIYNDHEQNSNPKSDVIRGESSELLTNSVKDEPKNKSQKDYIHLRSRRGQATNSHSLAERVRREKISERMKVLQDLVPGCNKVTGKALVLENIINYVQSLQSQVEILSVKLTSVLSRCHFDLQINGHPSKEHWSNVRETEDFHGSLMHYKQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1073			33	66	1.0
1132	25		75		0.996473
1133	25			75	0.996473
1278	14		85		0.993533
1279		14	85		0.993533
1281			85	14	0.993533
1329			57	42	1.0
1393	83	16			0.994512
1394	83	16			0.994512
1396		16		83	0.994512
1397	16		83		0.994512
1398		66		16	0.988813
1511		20	80		0.995493
1512	75	25			0.996473
1513	75	25			0.996473
1514			25	75	0.996473
1517	66	33			0.997452
1522		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain