SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6602

Length: 2325 nt

UniGene Fasta

>sp_v3.0_unigene6602
CTACTACGTCTGCGGAGGTCGAGTTTAAGAGTAATGGATCATGTAGCTTGCACTGAGTCAGTCAATTCATTCATCTTATTTTGCCCAGAATGGCGGCTTTAGAGATTTTTATATTCTATATGACGCAGCCATTGCGTGACACATTACCCAATTTCGAAATAAATGGAATAGATGATTTTCAGTAAATCCATGTTTGGAAAAAGACCAAATTTGTTTAGTTAAGAGCGTGATATTTTAGAAAAAGTCAAAATTACTTGAGATGTTTGCAAAATCCTTGCAACTGCACACAGAAATCTCGCCGGTTGTCTGCAATCGTTCTTGTTTTTTGGTTTGTGGAGAGTTAGATCACCAAAAATGGGGATAGTACTCTTTCTGTCCTATTGTATTTATGCTCACCAGTCTGCCCAATTTGAATCAGATAGGGTGTGATTTAACTCAGTATAGGCATTTATCGACAGAGAGGATTCATTGGCTCTGGAGAAGCCGAGGATTTCGAAGAAGAATTCTGCAAACCAACCAGGGTATTTTGGTGCCTGATTGTTATTGAATAGATGGGAAATTCGGATTTGGAGAAGAAGAGAAAGAGGTATAGATTGGAATGGAAATCATGGGCATCCGTCGCTTTAATTGGGATTTTGGCCATCGCTGTTGCTGCTTCATCATCATCAGGCAGAGAAACTGTGATTTCTTTGTTTGGCTTCTCCAACAAGCTATGCAGTTGTGGGAGTCAAAATAAACTTACTGGACTTGTGGAAGATTGCTGTTGTGATTATGAAACTGTGGACACTCTTAACAATGAGGTGTTACACCCTTCACTTCAAGAAGTTGTGAAAACTCCTTTCTTCCGGTATTTTAAGGCAAGGCTTTGGTGTGATTGTCCATTCTGGCCTGATGATGGTATGTGCCATCTCCGAGATTGTAGTGTGTGCGAATGTCCTGCTCATGAGTTTCCTGAATCATTCAAGAGACCAAATATTCAGCTGTCCAGTGATGACCCAATTTGTCAAGAGGGCAAGCCACAGGCTACAGTTGATCGGACTCTAGATAGTAAGGCATTTACGGGTTGGATGGAAATAGACAACCCCTGGACCTATGATGACGAGACTGACAACTCTGAAATGACTTACGTAAATCTTCAACTAAATCCAGAACGCTACACAGGCTACATTGGTCCTTCATCTCGGAGAATTTGGGACTCTATATACAAGGAGCATTGTCTCAAAGATGGACCTGGAGATTCCTCTCCAGAGAGGCGGGTTTTCTACAAGCTTATTTCAGGGTTGCATTCTTCTATTACAGTTCATATCGCAGCAGAATATCTACTTGATGAGGAAAAGGATCTGTGGGGGCCAAATCCAATTTTGCTTTATGAACGGGTGTTGAAATATCCTGAGAGAGTGAGAAATTTGTACTTCACATTCCTCTTTGTGCTTCGAGCAGTGACAAAGGCAGCTGACTACCTTTCCCAAGCAGAATACAGCACAGGAAATCCATTAGAGGATAAACATACACAGTCATTAATCATTCAGCTTGTAAATAACAGGCAATTACAAGCAGCTTGTCCAATTCCTTTTGATGAAGCCAAATTGTGGAGGGGTCAGAATGTGCATGACTTGAAAAGGCAAATTCAGTTGCAGTTCAGAAATATAAGTGCGTTGATGGACTGTGTTGGCTGTGAAAAATGCCGGCTTTGGGGAAAGCTTCAAATCCTTGGTGTTGGCACAGCCTTGAAGATTCTTTTTTCTGTAGACAGCGGCAATTCTGTAGTCCAGCCATTACAGTTACAGCGAAACGAAGTTATTGCATTGATAAATCTTCTGAACAGATTATCAGAATCAGTTCAAACAGTGCAGGCATTTCTTCCCATTGTTGAGAATGTTGTAAAAAAAGGGAATCGTTCAGTGCCCATTGTTGAGAGTGTAAAGAGTTCCTGGTAAGTATTTTTCAATTAAGGGCAGCTAGTGAAGATAAACAGATAATTTCCTAGTTGAATGTGCATTTGCATATCATGCTGGTTTGTTATTCTTGACACTGGGTGCCACTTTACTGAACTGGTGAGCCTCTTTAAATTGTAATTTTATAAGATTGTAAGGACAATCTGAGCACTGACATATTCTAGATTCATTAATTCCTGGGAAAGAGGAATAATGGTGACTGGGGCTTTGGAATATTTTATTCATTCTCTACCTTCCAAAAGGGGGGTGCTCTGTCATACTGTACAAGAAATTGGGACTCAGAAGCAAGTCCTGTGAGAATAAATAACAACAGCAATCAACTGATCAAGCTTCACATGATATATTTGAAATTTTTTTAAGGTTAATCAAA

Ace file of the UniGene sp_v3.0_unigene6602

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative endoplasmic reticulum oxidoreductin [Oryza sativa Japonica Group] gb\|ABF98719.1\| Endoplasmic oxidoreductin 1 precursor, putative, expressed [Oryza sativa Japonica Group]	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Endoplasmic oxidoreductin-1	-	-	6.427e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	6.427e-09	-

Source	Gene names
Sma3	AERO1; AERO2; At1g72280; At2g38960; CHLREDRAFT_195663; ERO1; ERO2; GSVIVT00002683001; GSVIVT00025811001; GSVIVT00028334001; LOC_Os03g52340; OSJNBa0027J18.20; OSJNBa0079G12.1; Os03g0733800; OsI_13409; OsJ_12469; PHYPADRAFT_183236; PHYPADRAFT_23278; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	protein thiol-disulfide exchange	GO:0006467	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Endoplasmic reticulum oxidoreductin 1	IPR007266	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38960.3	ERO2 endoplasmic reticulum oxidoreductins 2 chr2:16265455-16268150 FORWARD LENGTH=479	67%
RefSeq	Arabidopsis thaliana	NP_181430.2	endoplasmic oxidoreductin-2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002317004.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPH1

Fln msg:

Fln protein: MGNSDLEKKRKRYRLEWKSWASVALIGILAIAVAASSSSGRETVISLFGFSNKLCSCGSQNKLTGLVEDCCCDYETVDTLNNEVLHPSLQEVVKTPFFRYFKARLWCDCPFWPDDGMCHLRDCSVCECPAHEFPESFKRPNIQLSSDDPICQEGKPQATVDRTLDSKAFTGWMEIDNPWTYDDETDNSEMTYVNLQLNPERYTGYIGPSSRRIWDSIYKEHCLKDGPGDSSPERRVFYKLISGLHSSITVHIAAEYLLDEEKDLWGPNPILLYERVLKYPERVRNLYFTFLFVLRAVTKAADYLSQAEYSTGNPLEDKHTQSLIIQLVNNRQLQAACPIPFDEAKLWRGQNVHDLKRQIQLQFRNISALMDCVGCEKCRLWGKLQILGVGTALKILFSVDSGNSVVQPLQLQRNEVIALINLLNRLSESVQTVQAFLPIVENVVKKGNRSVPIVESVKSSW*

Protein Length: 463

Fln nts: CTACTACGTCTGCGGAGGTCGAGTTTAAGAGTAATGGATCATGTAGCTTGCACTGAGTCAGTCAATTCATTCATCTTATTTTGCCCAGAATGGCGGCTTTAGAGATTTTTATATTCTATATGACGCAGCCATTGCGTGACACATTACCCAATTTCGAAATAAATGGAATAGATGATTTTCAGTAAATCCATGTTTGGAAAAAGACCAAATTTGTTTAGTTAAGAGCGTGATATTTTAGAAAAAGTCAAAATTACTTGAGATGTTTGCAAAATCCTTGCAACTGCACACAGAAATCTCGCCGGTTGTCTGCAATCGTTCTTGTTTTTTGGTTTGTGGAGAGTTAGATCACCAAAAATGGGGATAGTACTCTTTCTGTCCTATTGTATTTATGCTCACCAGTCTGCCCAATTTGAATCAGATAGGGTGTGATTTAACTCAGTATAGGCATTTATCGACAGAGAGGATTCATTGGCTCTGGAGAAGCCGAGGATTTCGAAGAAGAATTCTGCAAACCAACCAGGGTATTTTGGTGCCTGATTGTTATTGAATAG_-_ATGGGAAATTCGGATTTGGAGAAGAAGAGAAAGAGGTATAGATTGGAATGGAAATCATGGGCATCCGTCGCTTTAATTGGGATTTTGGCCATCGCTGTTGCTGCTTCATCATCATCAGGCAGAGAAACTGTGATTTCTTTGTTTGGCTTCTCCAACAAGCTATGCAGTTGTGGGAGTCAAAATAAACTTACTGGACTTGTGGAAGATTGCTGTTGTGATTATGAAACTGTGGACACTCTTAACAATGAGGTGTTACACCCTTCACTTCAAGAAGTTGTGAAAACTCCTTTCTTCCGGTATTTTAAGGCAAGGCTTTGGTGTGATTGTCCATTCTGGCCTGATGATGGTATGTGCCATCTCCGAGATTGTAGTGTGTGCGAATGTCCTGCTCATGAGTTTCCTGAATCATTCAAGAGACCAAATATTCAGCTGTCCAGTGATGACCCAATTTGTCAAGAGGGCAAGCCACAGGCTACAGTTGATCGGACTCTAGATAGTAAGGCATTTACGGGTTGGATGGAAATAGACAACCCCTGGACCTATGATGACGAGACTGACAACTCTGAAATGACTTACGTAAATCTTCAACTAAATCCAGAACGCTACACAGGCTACATTGGTCCTTCATCTCGGAGAATTTGGGACTCTATATACAAGGAGCATTGTCTCAAAGATGGACCTGGAGATTCCTCTCCAGAGAGGCGGGTTTTCTACAAGCTTATTTCAGGGTTGCATTCTTCTATTACAGTTCATATCGCAGCAGAATATCTACTTGATGAGGAAAAGGATCTGTGGGGGCCAAATCCAATTTTGCTTTATGAACGGGTGTTGAAATATCCTGAGAGAGTGAGAAATTTGTACTTCACATTCCTCTTTGTGCTTCGAGCAGTGACAAAGGCAGCTGACTACCTTTCCCAAGCAGAATACAGCACAGGAAATCCATTAGAGGATAAACATACACAGTCATTAATCATTCAGCTTGTAAATAACAGGCAATTACAAGCAGCTTGTCCAATTCCTTTTGATGAAGCCAAATTGTGGAGGGGTCAGAATGTGCATGACTTGAAAAGGCAAATTCAGTTGCAGTTCAGAAATATAAGTGCGTTGATGGACTGTGTTGGCTGTGAAAAATGCCGGCTTTGGGGAAAGCTTCAAATCCTTGGTGTTGGCACAGCCTTGAAGATTCTTTTTTCTGTAGACAGCGGCAATTCTGTAGTCCAGCCATTACAGTTACAGCGAAACGAAGTTATTGCATTGATAAATCTTCTGAACAGATTATCAGAATCAGTTCAAACAGTGCAGGCATTTCTTCCCATTGTTGAGAATGTTGTAAAAAAAGGGAATCGTTCAGTGCCCATTGTTGAGAGTGTAAAGAGTTCCTGGTAA___GTATTTTTCAATTAAGGGCAGCTAGTGAAGATAAACAGATAATTTCCTAGTTGAATGTGCATTTGCATATCATGCTGGTTTGTTATTCTTGACACTGGGTGCCACTTTACTGAACTGGTGAGCCTCTTTAAATTGTAATTTTATAAGATTGTAAGGACAATCTGAGCACTGACATATTCTAGATTCATTAATTCCTGGGAAAGAGGAATAATGGTGACTGGGGCTTTGGAATATTTTATTCATTCTCTACCTTCCAAAAGGGGGGTGCTCTGTCATACTGTACAAGAAATTGGGACTCAGAAGCAAGTCCTGTGAGAATAAATAACAACAGCAATCAACTGATCAAGCTTCACATGATATATTTGAAATTTTTTTAAGGTTAATCAAA

Fln Alignment:

Contig6602___DLEKKRKRYRLEWKSWXXXXXXXXXXXXXXXXXXXXRETVISLFGFSNKLCSCGSQNKLTGLVEDCCCDYETVDTLNNEVLHPSLQEVVKTPFFRYFKARLWCDCPFWPDDGMCHLRDCSVCECPAHEFPESFKRPNIQLSSDDPICQEGKPQATVDRTLDSKAFTGWMEIDNPWTYDDETDNSEMTYVNLQLNPERYTGYIGPSSRRIWDSIYKEHCLKDGPGDSSPERRVFYKLISGLHSSITVHIAAEYLLDEEKDLWGPNPILLYERVLKYPERVRNLYFTFLFVLRAVTKAADYLSQAEYSTGNPLEDKHTQSLIIQLVNNRQLQAACPIPFDEAKLWRGQNVHDLKRQIQLQFRNISALMDCVGCEKCRLWGKLQILGVGTALKILFSVDSGNSVVQ--PLQLQRNEVIALINLLNRLSESVQTVQAFLPIVENVV
B8LPH1______________ELEEQRRHSSRFW-GWKTWTVIALTTILAVSVAACGRQPRMSLFGFSTKECKCTSSHELTGIVEDCCCDYKTVDTLNDHVLHPLLQDLVRAPFFRYFKAKLWCDCPFWPDDGMCHLRDCSVCECPEHEFPETFKVPSGQLPVDDLKCQEGKPQAMVDRTLDKKAFRGWMETDNPWTYDDETDNSEMTYVNLLLNPERYTGYMGPSARRIWDTIYKKHCLKDLPGDASTERRVLYKLISGMHSSISVHIAKEYLLDEGKNLWGPNPTLLYERVLKHPDRVRNLYFTFLFVLRAVTKAGDYLSQAEYSTMNSLEDQNTLSLVNQLVNNKRLQSACPIPFDEAKLWKGENGNELKSQIQLQFRNISALMDCVGCEKCRLWGKLQILGLGTALKILFSVDSNDLINQSAQLQLQRNEVIALINLLSRLSESVKTLHDLAPVTKNAM

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
39			66	33	0.997452
51		33	66		0.997452
149	33	66			0.997452
396		80		20	0.995493
459	20		80		0.995493
460	80			20	0.995493
462	80			20	0.995493
487			25	75	0.996473
553	75			25	0.996473
575	50			50	1.0
613	33		66		1.0
657	50			50	1.0
701	14			85	0.993533
702	14	85			0.993533
704		85	14		0.993533
705		85		14	0.993533
1005	25			75	0.996473
1006		25		75	0.996473
1007			75	25	0.996473
1099	14		85		0.993533
1230		16		83	0.994512
1232			83	16	0.994512
1291	25			75	0.996473
1376	75		25		0.996473
1591		85		14	0.993533
1650	14			85	0.993533
1704			85	14	0.993533
1882			88	11	0.923564
2283	12		87		0.992554
2284	87	12			0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
657	668	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain