SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6577

Length: 2637 nt

UniGene Fasta

>sp_v3.0_unigene6577
CAAGAGATGCGGTTCCCTGACAATAGTTATATATCTTATATATTCCATTTTACATATTGATGTAGTTTTATATCCAACTTGTGGAACAATTGAATATCTGCTGTGTATTTAATTACGGGCAGAAATGATTTAATTAATTGGGAAAAAGGCAAGCTTTAGTGGGTGGCATAAAGCTCGAAACATACACATGCTGTTTGGTCACAGTCCTGCCACAGGGACATAATCTCCAGTCTCTGCATACGAATGTATATTTTCCTGTGGGCTGTAATATTGTTCATCTGGTGTTTATCTCAGTTTCTTTCCACGGTCAAATGCCATTTTCATGTTCAATTATTTTCCAGTGAAGCAAGTGGATTGAGCATGCAAAGAATTATAGGATTAGTTCCATTATCGTTAGCGTTCCCTGTTGGTGCTCAACGCATGCTTCTGTTGGCTCTGGCTCTCCATTCACCTTTTACACTTTCTTATTTGCTAACCTTCTGCTCTAGAATTCTCTCTATTTTTGGGTCTTAAGGGCCATTTTGCTGAAGGCTGACAGTAACTGTAATACGGTTTTGTTCAAGTGAGATTCCATTCTGAAATTATTGCATTGTTTAAAATATAAATTTTGATGTCCAAACGTATATTTTCTCTCGCTTCTGCGTTCGTGCAAAAGTTGGATCAGGGATCAATGACAATGGAGGATTGATTGGTCTGCGAAGATGCCTGAAAACAATATGCTGAGATCAGATTCATCATGAAGAGCCTTGTGAAATGGGCATCGGATATTGGAGATGAAGGAGCGGCAACGGTGGCAGCCTGAAGAAGATGCTTTATTACGTGCTTATGTTAAGCAATACGGGCCAAGGGAATGGAACTTAGTATCACAGCGAATGGGAAAAGCCCTGGACAGAGATGCGAAATCCTGTTTAGAGAGGTGGAAGAACTATCTTAAGCCTGGGATAAAAAAGGGTTCTTTAACAGAAGAGGAGCAATCACTTGTTATAAGTCTTCAAGCAAAATATGGTAACAAGTGGAAGAAAATTGCCGCTGAAGTGCCAGGACGGACAGCAAAGAGATTAGGTAAATGGTGGGAGGTATTCAAAGAAAAGCAGCTGAAGGAGAGGCGCAAAGAAAGGCACAATATAGACAGTGCCAACTCCAGGGAAGGAGGCAAGTATGACCATATTTTGGAAACATTTGCAGAAAAATATGTGCAAAAGAAAATTTGTCCAACCAGCTTACCACCCATTCTGATGCCCTGCCCGTCATCCTCTCCTCTCCTGACCCTCAGTGTTCCAACAGGTAGTACATATGCTGATAACATATGTCTGGCCAATGTAAAAACAACACCATCTGTTTTATCAGGTCCAATTGTTTCCCAGATGGCAAACTTACCTGGATCTATGGGTTTTACTCTGCCTGTCATCAAGGGAAAAATGCCTTCGGCACGTGAAATAGAACCCCGGTTGACCTTAGAAAGCCTTGGTAGTACAAGGCCCATGTTGGAGCCCGAACTTGCTTTGCAATGCAGTTCTTCGGCGATGGATTTAGATTTGACACCAACGTATCTTGGAACTTCGTCTTCTGCTGTTGATGCAACCTCATCCCTTCCTTCATGGATGTCCAATGTACCCACTGCACAAGTGCCTTCCTCAGGTGGTTCTGATGTTAAAACTACGGTGTCTGCATTCATTTTGGAGAAAGATACTCCTTTCTCATCCAAATCAATTCATCTCAACTCATCCCCTTCTGTGAGTCTGTCTCTTTCTCCATCATCAAGTGATCCAGTTGTGTCTAGTGGCTCTGCATCACCTGCCTCTGAAGTTATAGCACCTAGGTCTTGGCTGCAGGATACTATGAGGCATCACGAGATTATCAATGGGGTTGCTGGGGGAGTTGCCAAAGAGAAAAAGGTAAATTTTCCATGGTGTGCATTGGAAAAGCAAGTAGGGACATCATCTTTTGATCCAAATTTGTCTTCTAACAAACAAGCAATGGATAGTCTAATCATGCAGCAACTGCCTACCTTCCTCCAATATTGCAAAGATCTAGAAGAGGGTAGACAGTCATGGTTTATGCACAAGAAGGAAGCTACCTGGAGGCTCAGTCGGCTTGAGCAGCAGCTTGAATCTGAGAAAGCTCGCAAGCGGAGAGAAAAAATTGAAGAGGTAGGTTCAAAAATACGTGCCCTCAGGGAGGAAGAAATAACATATCTTGACAAACTGGAAACTGAGTGCAGGGAGCAGCTTTCTAGTCTCCAAAGGGATGCAGAAATGAAGGAGGCTAAGATGATGGAATTGTGGGCTACCAAACATCTGCAGTTGACAAAATTCGTTGAACAGATGCTTTATCAGTTTCCTGATGCTCAGAGACTCTTCAGCAAGGAAATGCATTGAAAAGTACCTCTTTAGCAAGGAAATGCATTGAAAAATACCTCTTTAGCAAGGAAATGCATTGACAAATGCCCCGAATTTATATAGATTTAAATGGCTTCATTCTTGCCTAGTTATACTGCTGGCTTTCACGCATTTTATTTAACAAGTTTGGATATACTGCAGAAAAACAGCTTTCTGTGAAGACTATTGTATAGCCTGCGTCCTGTCTCATAAATTGCTTTAATTTCTATTATTTTAGTCCCATCTTTTTCCCTGTTCT

Ace file of the UniGene sp_v3.0_unigene6577

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phantastica-like MYB protein [Eschscholzia californica subsp. californica]	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Phantastica transcription factor	-	-	2.67e-14	-

Source	Gene names
Sma3	ARP1; AS1; At2g37630; F13M22.13; GSVIVT00021322001; GSVIVT00038174001; LOC_Os12g38400; MAPHAN1; MYB091; MYB110; MYB154; MYB223; MYB224; MYB91; Os12g0572000; OsI_37943; OsI_38817; OsJ_36593; PHAN; PHAN1; PHANa; PHANb; POPTRDRAFT_556142; POPTRDRAFT_580774;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	asymmetric cell division	GO:0008356	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	leaf formation	GO:0010338	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G37630.1	ATPHAN, AS1, ATMYB91, MYB91 myb-like HTH transcriptional regulator family protein chr2:15781798-15782901 REVERSE LENGTH=367	73%
RefSeq	Arabidopsis thaliana	NP_181299.1	transcription factor AS1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002329321.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABT4

Fln msg: your sequence is longer than subject: 535 - 382

Fln protein: MKERQRWQPEEDALLRAYVKQYGPREWNLVSQRMGKALDRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVISLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLKERRKERHNIDSANSREGGKYDHILETFAEKYVQKKICPTSLPPILMPCPSSSPLLTLSVPTGSTYADNICLANVKTTPSVLSGPIVSQMANLPGSMGFTLPVIKGKMPSAREIEPRLTLESLGSTRPMLEPELALQCSSSAMDLDLTPTYLGTSSSAVDATSSLPSWMSNVPTAQVPSSGGSDVKTTVSAFILEKDTPFSSKSIHLNSSPSVSLSLSPSSSDPVVSSGSASPASEVIAPRSWLQDTMRHHEIINGVAGGVAKEKKVNFPWCALEKQVGTSSFDPNLSSNKQAMDSLIMQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLESEKARKRREKIEEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWATKHLQLTKFVEQMLYQFPDAQRLFSKEMH*

Protein Length: 536

Fln nts: CAAGAGATGCGGTTCCCTGACAATAGTTATATATCTTATATATTCCATTTTACATATTGATGTAGTTTTATATCCAACTTGTGGAACAATTGAATATCTGCTGTGTATTTAATTACGGGCAGAAATGATTTAATTAATTGGGAAAAAGGCAAGCTTTAGTGGGTGGCATAAAGCTCGAAACATACACATGCTGTTTGGTCACAGTCCTGCCACAGGGACATAATCTCCAGTCTCTGCATACGAATGTATATTTTCCTGTGGGCTGTAATATTGTTCATCTGGTGTTTATCTCAGTTTCTTTCCACGGTCAAATGCCATTTTCATGTTCAATTATTTTCCAGTGAAGCAAGTGGATTGAGCATGCAAAGAATTATAGGATTAGTTCCATTATCGTTAGCGTTCCCTGTTGGTGCTCAACGCATGCTTCTGTTGGCTCTGGCTCTCCATTCACCTTTTACACTTTCTTATTTGCTAACCTTCTGCTCTAGAATTCTCTCTATTTTTGGGTCTTAAGGGCCATTTTGCTGAAGGCTGACAGTAACTGTAATACGGTTTTGTTCAAGTGAGATTCCATTCTGAAATTATTGCATTGTTTAAAATATAAATTTTGATGTCCAAACGTATATTTTCTCTCGCTTCTGCGTTCGTGCAAAAGTTGGATCAGGGATCAATGACAATGGAGGATTGATTGGTCTGCGAAGATGCCTGAAAACAATATGCTGAGATCAGATTCATCATGAAGAGCCTTGTGAAATGGGCATCGGATATTGGAG_-_ATGAAGGAGCGGCAACGGTGGCAGCCTGAAGAAGATGCTTTATTACGTGCTTATGTTAAGCAATACGGGCCAAGGGAATGGAACTTAGTATCACAGCGAATGGGAAAAGCCCTGGACAGAGATGCGAAATCCTGTTTAGAGAGGTGGAAGAACTATCTTAAGCCTGGGATAAAAAAGGGTTCTTTAACAGAAGAGGAGCAATCACTTGTTATAAGTCTTCAAGCAAAATATGGTAACAAGTGGAAGAAAATTGCCGCTGAAGTGCCAGGACGGACAGCAAAGAGATTAGGTAAATGGTGGGAGGTATTCAAAGAAAAGCAGCTGAAGGAGAGGCGCAAAGAAAGGCACAATATAGACAGTGCCAACTCCAGGGAAGGAGGCAAGTATGACCATATTTTGGAAACATTTGCAGAAAAATATGTGCAAAAGAAAATTTGTCCAACCAGCTTACCACCCATTCTGATGCCCTGCCCGTCATCCTCTCCTCTCCTGACCCTCAGTGTTCCAACAGGTAGTACATATGCTGATAACATATGTCTGGCCAATGTAAAAACAACACCATCTGTTTTATCAGGTCCAATTGTTTCCCAGATGGCAAACTTACCTGGATCTATGGGTTTTACTCTGCCTGTCATCAAGGGAAAAATGCCTTCGGCACGTGAAATAGAACCCCGGTTGACCTTAGAAAGCCTTGGTAGTACAAGGCCCATGTTGGAGCCCGAACTTGCTTTGCAATGCAGTTCTTCGGCGATGGATTTAGATTTGACACCAACGTATCTTGGAACTTCGTCTTCTGCTGTTGATGCAACCTCATCCCTTCCTTCATGGATGTCCAATGTACCCACTGCACAAGTGCCTTCCTCAGGTGGTTCTGATGTTAAAACTACGGTGTCTGCATTCATTTTGGAGAAAGATACTCCTTTCTCATCCAAATCAATTCATCTCAACTCATCCCCTTCTGTGAGTCTGTCTCTTTCTCCATCATCAAGTGATCCAGTTGTGTCTAGTGGCTCTGCATCACCTGCCTCTGAAGTTATAGCACCTAGGTCTTGGCTGCAGGATACTATGAGGCATCACGAGATTATCAATGGGGTTGCTGGGGGAGTTGCCAAAGAGAAAAAGGTAAATTTTCCATGGTGTGCATTGGAAAAGCAAGTAGGGACATCATCTTTTGATCCAAATTTGTCTTCTAACAAACAAGCAATGGATAGTCTAATCATGCAGCAACTGCCTACCTTCCTCCAATATTGCAAAGATCTAGAAGAGGGTAGACAGTCATGGTTTATGCACAAGAAGGAAGCTACCTGGAGGCTCAGTCGGCTTGAGCAGCAGCTTGAATCTGAGAAAGCTCGCAAGCGGAGAGAAAAAATTGAAGAGGTAGGTTCAAAAATACGTGCCCTCAGGGAGGAAGAAATAACATATCTTGACAAACTGGAAACTGAGTGCAGGGAGCAGCTTTCTAGTCTCCAAAGGGATGCAGAAATGAAGGAGGCTAAGATGATGGAATTGTGGGCTACCAAACATCTGCAGTTGACAAAATTCGTTGAACAGATGCTTTATCAGTTTCCTGATGCTCAGAGACTCTTCAGCAAGGAAATGCATTGA___AAAGTACCTCTTTAGCAAGGAAATGCATTGAAAAATACCTCTTTAGCAAGGAAATGCATTGACAAATGCCCCGAATTTATATAGATTTAAATGGCTTCATTCTTGCCTAGTTATACTGCTGGCTTTCACGCATTTTATTTAACAAGTTTGGATATACTGCAGAAAAACAGCTTTCTGTGAAGACTATTGTATAGCCTGCGTCCTGTCTCATAAATTGCTTTAATTTCTATTATTTTAGTCCCATCTTTTTCCCTGTTCT

Fln Alignment:

Contig6577___YADNICLANVKTTPSVLSGPIVSQMANLPGSMGFTLPVIKGKMPSAREIEPRLTLESLGSTRPMLEPELALQCSSSAMDLDLTPTYLGTSSSAVDATSSLPSWMSNVPTA--QVPSSGGSDVKTTVSAFILEKDTPFSSKSIHLNXXXXXXXXXXXXXXXXXXXXXXXXXXXEVIAPRSWLQDTMRHHEIINGVAGGVAKEKKVNFPWCALEKQVGTSSFDPNLSSNKQAMDSLIMQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLXXXXXXXXXXXXXXVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWATKHLQLTKFVEQMLYQFPDAQRLFSKEMH
D5ABT4______________YADNICLANVKTTPSVSTGPIVSQMANLHGSMGLTLPVIKGKMPSAREIEPRLTLESLGSTRSMLEPELALQCNASAMDLELTPTYLGTSSSAVDAASSLPPWMSNVPTAHAQVHASGGSDVKTMASTFILEKDTPFSSKSIHINSSPSVSLSLSPSSSDPVVSSGSASPASEVIAPRSWLQDTMRHQESINGVAGGIAKEGKVNLPWCALEKQVGTSSFDPNLASSKQAMDNLIMQQLPTFLQYCKDLEEGRQSWFMHKKEATWRLSRLEQQLESEKARKRREKIEEVGSKIRALREEEITYLDKLETECREQLSSLQRDAEMKEAKMMELWAAKHLQLTKFVEQMLYQFPDAQRLFSKEMH

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1886		66		33	0.997452
2411			11	88	0.923564
2413	88		11		0.923564
2428	11		88		0.923564
2431	88			11	0.923564
2432			88	11	0.923564
2438	12		87		0.992554
2469			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain