SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6555

Length: 2950 nt

UniGene Fasta

>sp_v3.0_unigene6555
AATTGTGAAAGTGGGCTGCAACAGATTGCAGGTCATAATTGCTCTGAGTGGGGGAGAGCTTATTTATTTTGAGATGGATATGACAGGGCAACTGATGGAGGTGGAAAAGTGTGAAATGCCTGGAGATGTGGCTTGTCTGGATATTGCTCCAGTTCCTGAAGGCAGACAAAGGTCTAGATTCCTGGCCGTAGGATTATATGACAGCACAATTCGCATATATTCTTTGGATCCTGATGATTGTTTGGTTGCTTTGAGTATGCAGGCTGTATCTTCTCCTCCAGAATCTCTTCTCTTACTTGAAGTTCAGGCGTCTGTTGGAGGGGAGGACGGTGCAGATCACCCAGCGAGTGTGTTTTTGAATGCTGGTTTGCAGAATGGGGTTCTTCTTAGAACTGAGGTAGATATGGCAAATGGTAGCCTTTCAGACACACGGACCAGATTCTTGGGTTTAAGAGCACCAAAACTTTTTTCTGCTATAGTGAGAGGCCGTCGGGCAACCCTTTGTTTATCAAGTAGGCCCTGGCTGGGCTATATTCATCAGGGGCACTTTCTTTTAACTCCACTTTCTTACGAGACTCTTGAATATGCAGCATCATTTTCTTCTGATCAGTGTGCTGAAGGTGTGGTTGCAGTTGCTGGGGATGCACTTAGGGTTTTTACGATTGAAAGGTTGGGAGAAACATTCAATCAGACTGTTATGCCTCTTAGATATACCCCAAGAAAGTTCATTTTGCATCCAAAGCAGAAATCATTGATTATTATTGAAAGCGATCAGGGTGCATTCACTGCAGAAGAACGTGAAGCTGCAAAGAAAGAATGCTTAGAAGCTGCTGGTTTAGGGGAGAGTGGGAACATGGAAACAGAGCAGCAGAATGGTGATGATGAAGAGAAGGAGGATCCACTTCCTGATGAGCAGTATGGTTATCCAAAAGCAGAGTCAAAGAAGTGGGCATCTTGTGTTAGAGTTCTAGATCCCAAAACTGGTGAAACTACATGCCTCTTGGCACTGCAGGATAATGAAGCTGCATTTAGCATTTGCTCTGTTACTTTTCATGATAAAGAATGGGGAACACTTGTGGCCATTGGAACTGCAAAGGATTTAGAATTTTGGCCAAAGAGGCATTGTTCAGGAGGTTTTATTCATATCTATAGGTCTGTGGATGATGGCAAAGCCTTGGAGCTTTTGCATAAAACACCAGTTGATGGAGTACCTCTTGGATTATGTCAATTTCAAGGCCGCTTATTAGTTGGGATTGGACAGGTGCTGAGAATATATGACTTGGGCAAAAGGAAATTGCTGCGGAAATGTGAGAATAAGCTCTTTCCCAATACAATTGTGTCTATTCACACTTATGGTGATCGTATTTATGTTGGAGATATTCAAGAGTCATTTCACTATGTGAAGTATCGGCGCGATGAGAACCAGCTGTATATATTTGCTGATGATTGTGTGCCTCGTTGGCTAACTTCTTCAATACATATAGACTTTGACACTATGGCAGGTGCAGATAAGTTTGGAAATGTTTACTTTGTTCGCTTACCACAGGATGTATCAGAGGAGATTGAAGATGATCCTACTGGTGGAAGGATCAGGTGGGAACAGGGTAAACTTAATGGAGCACCCAATAAAGTTGAAGAAATAATACAATTTCATATAGGCGATGTAGTATCAAGTTTACAGAAGGCATCACTTATACCTGGTGGTGGTGAATGTCTCATTTATGGGACAGTGATGGGAAGTATTGGGGCACTGCTGCCATTTACATCGAGAGAGGATGTTGACTTCTTCTCACATTTGGAGATGCATTTGAGGCAGGAACACCCTCCTTTGTGTGGTAGAGATCACATGGCTTATAGATCATCTTATTTTCCAGTGAAGGATGTGATTGATGGTGATCTTTGCGAGCAGTTTCCTACCCTGCCACCTGATTTGCAGCGCAAGATTGCAGAGGAGCTTGATCGTTCACCTGGTGAAATATTGAAGAAACTAGAAGACATCAGGAATAAGATAATCTAATTGAACACTATTGCTTGACATCTTGGAGCAATGAGAAATTTAGGGGCAAATTTTAGCTAATAGGCAAAATATTTTAGGTTAACATAGAAAGTGGGTGAATTTTGATTATTAACCATGTTGCAAATATCTCTGTTTCCCTCAATATTTCTGATATTTTTCGAGTGACTTTCAGGTCCAAGGTTTGAGGAAAACCTTGCGGGGAAGAGGCTTCCCCACATTAATGGATCACATTCCTAGTAAACCTGCTGGTGTAGACTAGGCTGCATCACCCAGGGGGATTTGGAAAAGGCACCTGATGGAACAGAACTAGCCAAATGCTCAGCAACATAGGTGACAACTGATTTAGCCCCTTGGGCTTACGCATGAGGATAGTTTATCCCATATTTCCGATAAGTTTCTGTTTGGAATCTTGGTGATATTTTCCATGAAATGATATTTGCAATATTGTTCTAAACTGATGGTATCATGGTATAATTAAGTTGCTTTACCCGTTTGGGAGAGTAGGAAGTTCAATATCTTATTTGGTAAATTTCTTTGACACTATTTATTCCACCTCTTCTACCATGATAAGTTATCCCAGCCATGGGTAAGTCTTTCTGGTCATTGTGGGTTGGTACTCCGGTTTGCACTTCCGCTGTGTTTAAATGAAATAGACATCTTGCTGGTACACCACTAGAATGCATTCAAGAAGGAAATCTGGCAGCTACCTCTTTTTTCTATATTATGCAGGGTGGTTGTGGGAGGCTCAAGAAATGTAGATTTGGCGTTGAGACCACTTACACCAACCCAAATCCCTTTATAATTTCATGAAATTGCACTGGCTAACTCACACCAGAGAAATCTAGGGAATTTTTATATATCATATGGGGAGTTGACATGTGAAGATATCTCAAATAAAAGGCAATTTATACGATCGCTTCTTGAGTTGCATCC

Ace file of the UniGene sp_v3.0_unigene6555

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor 3B subunit 3 [Arabidopsis thaliana] ref\|NP_567016.1\| putative splicing factor [Arabidopsis thaliana] emb\|CAB75754.1\| spliceosomal-like protein [Arabidopsis thaliana] emb\|CAB75756.1\| spliceosomal-like protein [Arabidopsis thaliana] gb\|AEE79	-	-	0.0	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	CPSF A subunit, C-terminal	-	-	3.006e-09	-

Source	Gene names
Sma3	At3g55200; At3g55220; CHLREDRAFT_194382; GSVIVT00002406001; GSVIVT00029524001; MICPUCDRAFT_29064; MICPUN_107017; MtrDRAFT_AC147482g39v2; MtrDRAFT_AC182813g2v2; OSJNBa0026E05.6; OSJNBa0081C13.30; OSTLU_24669; Os02g0137400; OsI_05771; OsJ_05303; Ot06g02280;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55200.1	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein chr3:20460533-20464361 FORWARD LENGTH=1214	79%
RefSeq	Arabidopsis thaliana	NP_567016.1	putative splicing factor [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002315251.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8K6

Fln msg: your sequence is longer than subject: 648 - 173

Fln protein: MDMTGQLMEVEKCEMPGDVACLDIAPVPEGRQRSRFLAVGLYDSTIRIYSLDPDDCLVALSMQAVSSPPESLLLLEVQASVGGEDGADHPASVFLNAGLQNGVLLRTEVDMANGSLSDTRTRFLGLRAPKLFSAIVRGRRATLCLSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNQTVMPLRYTPRKFILHPKQKSLIIIESDQGAFTAEEREAAKKECLEAAGLGESGNMETEQQNGDDEEKEDPLPDEQYGYPKAESKKWASCVRVLDPKTGETTCLLALQDNEAAFSICSVTFHDKEWGTLVAIGTAKDLEFWPKRHCSGGFIHIYRSVDDGKALELLHKTPVDGVPLGLCQFQGRLLVGIGQVLRIYDLGKRKLLRKCENKLFPNTIVSIHTYGDRIYVGDIQESFHYVKYRRDENQLYIFADDCVPRWLTSSIHIDFDTMAGADKFGNVYFVRLPQDVSEEIEDDPTGGRIRWEQGKLNGAPNKVEEIIQFHIGDVVSSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIAEELDRSPGEILKKLEDIRNKII*

Protein Length: 649

Fln nts: AATTGTGAAAGTGGGCTGCAACAGATTGCAGGTCATAATTGCTCTGAGTGGGGGAGAGCTTATTTATTTTGAG_-_ATGGATATGACAGGGCAACTGATGGAGGTGGAAAAGTGTGAAATGCCTGGAGATGTGGCTTGTCTGGATATTGCTCCAGTTCCTGAAGGCAGACAAAGGTCTAGATTCCTGGCCGTAGGATTATATGACAGCACAATTCGCATATATTCTTTGGATCCTGATGATTGTTTGGTTGCTTTGAGTATGCAGGCTGTATCTTCTCCTCCAGAATCTCTTCTCTTACTTGAAGTTCAGGCGTCTGTTGGAGGGGAGGACGGTGCAGATCACCCAGCGAGTGTGTTTTTGAATGCTGGTTTGCAGAATGGGGTTCTTCTTAGAACTGAGGTAGATATGGCAAATGGTAGCCTTTCAGACACACGGACCAGATTCTTGGGTTTAAGAGCACCAAAACTTTTTTCTGCTATAGTGAGAGGCCGTCGGGCAACCCTTTGTTTATCAAGTAGGCCCTGGCTGGGCTATATTCATCAGGGGCACTTTCTTTTAACTCCACTTTCTTACGAGACTCTTGAATATGCAGCATCATTTTCTTCTGATCAGTGTGCTGAAGGTGTGGTTGCAGTTGCTGGGGATGCACTTAGGGTTTTTACGATTGAAAGGTTGGGAGAAACATTCAATCAGACTGTTATGCCTCTTAGATATACCCCAAGAAAGTTCATTTTGCATCCAAAGCAGAAATCATTGATTATTATTGAAAGCGATCAGGGTGCATTCACTGCAGAAGAACGTGAAGCTGCAAAGAAAGAATGCTTAGAAGCTGCTGGTTTAGGGGAGAGTGGGAACATGGAAACAGAGCAGCAGAATGGTGATGATGAAGAGAAGGAGGATCCACTTCCTGATGAGCAGTATGGTTATCCAAAAGCAGAGTCAAAGAAGTGGGCATCTTGTGTTAGAGTTCTAGATCCCAAAACTGGTGAAACTACATGCCTCTTGGCACTGCAGGATAATGAAGCTGCATTTAGCATTTGCTCTGTTACTTTTCATGATAAAGAATGGGGAACACTTGTGGCCATTGGAACTGCAAAGGATTTAGAATTTTGGCCAAAGAGGCATTGTTCAGGAGGTTTTATTCATATCTATAGGTCTGTGGATGATGGCAAAGCCTTGGAGCTTTTGCATAAAACACCAGTTGATGGAGTACCTCTTGGATTATGTCAATTTCAAGGCCGCTTATTAGTTGGGATTGGACAGGTGCTGAGAATATATGACTTGGGCAAAAGGAAATTGCTGCGGAAATGTGAGAATAAGCTCTTTCCCAATACAATTGTGTCTATTCACACTTATGGTGATCGTATTTATGTTGGAGATATTCAAGAGTCATTTCACTATGTGAAGTATCGGCGCGATGAGAACCAGCTGTATATATTTGCTGATGATTGTGTGCCTCGTTGGCTAACTTCTTCAATACATATAGACTTTGACACTATGGCAGGTGCAGATAAGTTTGGAAATGTTTACTTTGTTCGCTTACCACAGGATGTATCAGAGGAGATTGAAGATGATCCTACTGGTGGAAGGATCAGGTGGGAACAGGGTAAACTTAATGGAGCACCCAATAAAGTTGAAGAAATAATACAATTTCATATAGGCGATGTAGTATCAAGTTTACAGAAGGCATCACTTATACCTGGTGGTGGTGAATGTCTCATTTATGGGACAGTGATGGGAAGTATTGGGGCACTGCTGCCATTTACATCGAGAGAGGATGTTGACTTCTTCTCACATTTGGAGATGCATTTGAGGCAGGAACACCCTCCTTTGTGTGGTAGAGATCACATGGCTTATAGATCATCTTATTTTCCAGTGAAGGATGTGATTGATGGTGATCTTTGCGAGCAGTTTCCTACCCTGCCACCTGATTTGCAGCGCAAGATTGCAGAGGAGCTTGATCGTTCACCTGGTGAAATATTGAAGAAACTAGAAGACATCAGGAATAAGATAATCTAA___TTGAACACTATTGCTTGACATCTTGGAGCAATGAGAAATTTAGGGGCAAATTTTAGCTAATAGGCAAAATATTTTAGGTTAACATAGAAAGTGGGTGAATTTTGATTATTAACCATGTTGCAAATATCTCTGTTTCCCTCAATATTTCTGATATTTTTCGAGTGACTTTCAGGTCCAAGGTTTGAGGAAAACCTTGCGGGGAAGAGGCTTCCCCACATTAATGGATCACATTCCTAGTAAACCTGCTGGTGTAGACTAGGCTGCATCACCCAGGGGGATTTGGAAAAGGCACCTGATGGAACAGAACTAGCCAAATGCTCAGCAACATAGGTGACAACTGATTTAGCCCCTTGGGCTTACGCATGAGGATAGTTTATCCCATATTTCCGATAAGTTTCTGTTTGGAATCTTGGTGATATTTTCCATGAAATGATATTTGCAATATTGTTCTAAACTGATGGTATCATGGTATAATTAAGTTGCTTTACCCGTTTGGGAGAGTAGGAAGTTCAATATCTTATTTGGTAAATTTCTTTGACACTATTTATTCCACCTCTTCTACCATGATAAGTTATCCCAGCCATGGGTAAGTCTTTCTGGTCATTGTGGGTTGGTACTCCGGTTTGCACTTCCGCTGTGTTTAAATGAAATAGACATCTTGCTGGTACACCACTAGAATGCATTCAAGAAGGAAATCTGGCAGCTACCTCTTTTTTCTATATTATGCAGGGTGGTTGTGGGAGGCTCAAGAAATGTAGATTTGGCGTTGAGACCACTTACACCAACCCAAATCCCTTTATAATTTCATGAAATTGCACTGGCTAACTCACACCAGAGAAATCTAGGGAATTTTTATATATCATATGGGGAGTTGACATGTGAAGATATCTCAAATAAAAGGCAATTTATACGATCGCTTCTTGAGTTGCATCC

Fln Alignment:

Contig6555___MAGADKFGNVYFVRLPQDVSEEIEDDPTGGRIRWEQGKLNGAPNKVEEIIQFHIGDVVSSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIAEELDRSPGEILKKLEDIRNKII
D5A8K6______________MAGADKFGNVYFVRLPQDVSEEIEDDPTGGRIRWEQGKLNGAPNKVEEIIQFHIGDVVTSLQKASLIPGGGECLIYGTVMGSIGALLPFTSREDVDFFSHLEMHLRQEQPPLCGRDHMGYRSSYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTPGEILKKLEDIRNKII

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
789	14	85			0.993533
1959	33			66	0.997452
1963			33	66	0.997452
1964		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain