SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6533

Length: 2922 nt

UniGene Fasta

>sp_v3.0_unigene6533
ATGGGGGACGTATTTCCATCTATGGGGACATTTCCAGGGGTCAAAGAGCAGCACAAAACAGAAGCGCCGAAACCGAGACACTAGTCATTCGTAAGCGCCTTTCCGCAAATTTTCTCTGAAAAAGCCGCCAAATCTAGCCAGTCCCCAAATCCCCGCTAACTCCACTCGATTGCCAGGACAGAGCGCCGCTGTTTTAGCCCCGGAAAAGCCGAACACAGAAACCCCGAACATCGCCCTCGGTAGCGTCCGTGAACCGTCTGAAATTCCCCCTGAACCCAAGCACTCCGTCACAGATCCATGTGACTGGGTGCTGAACAATGGCGGGATCATATCCTTACAGAATTCCCCCGCAGCAGAACGCCCTGGCCTCCAAGATATTGCTACTTCTGACGGCACTGCCGCTAACTTTAGCGCTGTTCGCTTTCGTTCTACAGTGGAGAGGGGGCCTGAACGATCCAGCCGGTCGATGGGCCGGAGATGGCAATAAATTTCCTGGTATGAGCACCGATTCGCCCTCTAATGGCCATTCTGTTACCGGTTCGGACTGCTCGGATCGGTTGGCTCAAAGCGTGACGCCGACATTTCCGTATTACAGAGGTTGGACGTTCGAATTCGCCGCAGATACACGCCCTAAGATATGTATTACTACAAGCACTTCAGCAGGGCTCGATCAGATTCTTCCTTGGATATATTACCATAAAGTCATTGGTGTAACCAACTTTCTTTTATTTGTGGAGGGGAAGGCAGCTGCAGCAAATACTACTGCTGTTTTGGAGAACATTCTGGGTGTGAAAGTTGTGCATCGAACAAAAGATCTAGAGGAGAAACAGGCAAAAAGTCGAATTTGGAATGAAACTTGGCTTTCAAGCTTCTTTTTCCGGCCATGCAACTATGAACTCTTTGTAAAGCAATCGCTAAATATGGAGATGGCAATTGTGATGGCAAGGGAAGCTAACATGGATTGGATTATTCATCTTGATACCGATGAGCTTCTTCATCCAGCAGGTGCCAGAGAGTACTCACTGAGGCAATTGCTATTAGATGTTCCAAATAATGTTGATATGGTGGTCTTCCCAAATTATGAGAGTGCCATTGAAAGAGATGACATAAAGGAGCCTTTTAGCGAGGTATCAATGTTTAAGAAGAATTATGATCATGTTACGAAGGAGACATATTTTGGGTTATATAAGGAGGCAACTCGAGGGAATCCAAATTACTTTTTAACATACGGTAATGGAAAAGCTGCTGCACGAGTTCAAGATCACCTTCGCCCAAATGGTGCACATCGTTGGCATAATTATATGAAAACACCAAATGAGATAAAGTTGGAAGAAGCTGCAGTATTGCACTACACTTACACAAAGTTCAGTGATTTGACTTCAAGGAGAGACCGTTGTGGTTGCAAGCCTACAAAGGAGGATGTCAAGAGATGCTTCATGCTGGAATTTGACCGTTCTGCATTCATAATCGCTTCTACTGCAACAGAGGAGGAGATGCGCCACTGGTACCGTGATCGCATAGTTTGGACTGACAAGGATTTGAATTTGAAGCTCATGAGAAAGGGTCTGTTGACACGGATATATGCTCCAATGGTCATAGTTCAAGGTTTGAAGGAGGCTGGTGTTTTCAGCAATGCTTTGGCATCTGGGCATGCTGTTCTTAAAAAATCAATGTCTAGAGAGCAGTTCTTGTCATCTGTGTCTGTTTCGAACAGAACTAATTCATCTGTAGCACAGGCTGTTGAAAATAAAGATGGGGATAAGCACCAAGCAAAGTTACTAGAAAAAGTTGGAGAAGGTGAAACTCATGCAGCAACTAGAAAGCTCCTAGAAACATCAATTCACACAGTTATGGCAGTGCCTCCCTTGGCACCTCCATCTTTAGATGTCTACACTGGAAGTTTCTAGGATAATGTGTCTGATTATTTTCATCAATCAATGCATAGCATCTTTCAAAGATTCAGACAGGAATGGTGCTTATGTTTGTCAGATTCATTTAATTTTCAAAATTTTCACACATAGAGAATGTACAGATGGTTATGAAAGTCTACCATTTATAGAAGCCCATGATGGAGTTGAAGATAGTTTCTATGGTTCGAAGCTCTGAAGTGGTGCTTAGGTGCCTTCTGTAGAGCTTGCATTCAGTTTCCATCTTGTCTTGGACGGAGAGAAAGGCACTTTACTGACTATTCTTTGAAGTCCAAATCTGGTTTCAGTCTGGATCGAGGCCTTCCAATGAGTAGAAATATTCCCGATCATTACCCAAGCGCAGCTGTAAAATTAATTTTTGTAGTTGGCAATCTCCTAGATTAGATTGCAGCCATTCAGTTCCTGTGAAATAACAAATGCACTATTGCTTCATATTGCTTTGTTGAGCACTGACAGCATTACTGTCATATTTTGCACAGTAAACTGTCATATATTAGGGGTGTTAACATGGATGCAGAAGAATTGCGAGGATACTCTATTTGGTGCTATTAAACTGACTGATTCAAATTTTGTCTCTGATTTGTCTGATTTCTGATATAAACCTCAGAATAGAATAGAAAGATTATTGTTAGCACCTATCACATCATTTGAATATAAACCTACATTTTTAAGATCTTGTATATTTGGAATCTTTTGGCAAAATTCAATTTATGGTTATGCTGTACATTATCTACTGGAATGAGCTCTGTTCAATTGAATATTGGATATAAGCACGTGTAGGAGTTTCTATTGAGCACAAACAATTTGATGGGATTTGAACATTTTGATGCCCTGGCCTTCGGAAAAATGTTGGACATTTGAATTCTTTAAATAGAATTTCATTTGCATCAGTTCTCTATATTTTTATCACAAAGTTAATCTGCTCTGGTGAATCAAACAGGACCCTCGAAAAGTTATTGCTGAATACTTTTGGCAAATGACCTTTTGAATCTCC

Ace file of the UniGene sp_v3.0_unigene6533

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%
Sma3	KOB1	-	-	2.076e-09	-

Source	Gene names
Sma3	At2g41450; At2g41451; At3g08550; At3g57200; At3g60950; At3g61030; ELD1; F17O14.2; F28O9.50; GSVIVT00028644001; LYC_68t000014; MBP_91N22.2; MICPUCDRAFT_46528; MICPUN_67842; MtrDRAFT_AC158502g29v2; Os01g0232800; OsI_01034; OsI_14911; OsJ_01003; OsJ_13865; P

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	plant-type cell wall modification involved in multidimensional cell growth	GO:0009831	Biological Process	-
Sma3	cellulose biosynthetic process	GO:0030244	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	GNAT domain	IPR000182	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	FBD	IPR006566	-	-
Sma3		IPR013596	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G08550.1	ELD1, ABI8, KOB1 elongation defective 1 protein / ELD1 protein chr3:2596513-2599515 FORWARD LENGTH=533	66%
RefSeq	Arabidopsis thaliana	NP_187467.1	elongation defective 1 protein / ELD1 protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002322648.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7SQ21

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAGSYPYRIPPQQNALASKILLLLTALPLTLALFAFVLQWRGGLNDPAGRWAGDGNKFPGMSTDSPSNGHSVTGSDCSDRLAQSVTPTFPYYRGWTFEFAADTRPKICITTSTSAGLDQILPWIYYHKVIGVTNFLLFVEGKAAAANTTAVLENILGVKVVHRTKDLEEKQAKSRIWNETWLSSFFFRPCNYELFVKQSLNMEMAIVMAREANMDWIIHLDTDELLHPAGAREYSLRQLLLDVPNNVDMVVFPNYESAIERDDIKEPFSEVSMFKKNYDHVTKETYFGLYKEATRGNPNYFLTYGNGKAAARVQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSREQFLSSVSVSNRTNSSVAQAVENKDGDKHQAKLLEKVGEGETHAATRKLLETSIHTVMAVPPLAPPSLDVYTGSF*

Protein Length: 531

Fln nts: ATGGGGGACGTATTTCCATCTATGGGGACATTTCCAGGGGTCAAAGAGCAGCACAAAACAGAAGCGCCGAAACCGAGACACTAGTCATTCGTAAGCGCCTTTCCGCAAATTTTCTCTGAAAAAGCCGCCAAATCTAGCCAGTCCCCAAATCCCCGCTAACTCCACTCGATTGCCAGGACAGAGCGCCGCTGTTTTAGCCCCGGAAAAGCCGAACACAGAAACCCCGAACATCGCCCTCGGTAGCGTCCGTGAACCGTCTGAAATTCCCCCTGAACCCAAGCACTCCGTCACAGATCCATGTGACTGGGTGCTGAACA_-_ATGGCGGGATCATATCCTTACAGAATTCCCCCGCAGCAGAACGCCCTGGCCTCCAAGATATTGCTACTTCTGACGGCACTGCCGCTAACTTTAGCGCTGTTCGCTTTCGTTCTACAGTGGAGAGGGGGCCTGAACGATCCAGCCGGTCGATGGGCCGGAGATGGCAATAAATTTCCTGGTATGAGCACCGATTCGCCCTCTAATGGCCATTCTGTTACCGGTTCGGACTGCTCGGATCGGTTGGCTCAAAGCGTGACGCCGACATTTCCGTATTACAGAGGTTGGACGTTCGAATTCGCCGCAGATACACGCCCTAAGATATGTATTACTACAAGCACTTCAGCAGGGCTCGATCAGATTCTTCCTTGGATATATTACCATAAAGTCATTGGTGTAACCAACTTTCTTTTATTTGTGGAGGGGAAGGCAGCTGCAGCAAATACTACTGCTGTTTTGGAGAACATTCTGGGTGTGAAAGTTGTGCATCGAACAAAAGATCTAGAGGAGAAACAGGCAAAAAGTCGAATTTGGAATGAAACTTGGCTTTCAAGCTTCTTTTTCCGGCCATGCAACTATGAACTCTTTGTAAAGCAATCGCTAAATATGGAGATGGCAATTGTGATGGCAAGGGAAGCTAACATGGATTGGATTATTCATCTTGATACCGATGAGCTTCTTCATCCAGCAGGTGCCAGAGAGTACTCACTGAGGCAATTGCTATTAGATGTTCCAAATAATGTTGATATGGTGGTCTTCCCAAATTATGAGAGTGCCATTGAAAGAGATGACATAAAGGAGCCTTTTAGCGAGGTATCAATGTTTAAGAAGAATTATGATCATGTTACGAAGGAGACATATTTTGGGTTATATAAGGAGGCAACTCGAGGGAATCCAAATTACTTTTTAACATACGGTAATGGAAAAGCTGCTGCACGAGTTCAAGATCACCTTCGCCCAAATGGTGCACATCGTTGGCATAATTATATGAAAACACCAAATGAGATAAAGTTGGAAGAAGCTGCAGTATTGCACTACACTTACACAAAGTTCAGTGATTTGACTTCAAGGAGAGACCGTTGTGGTTGCAAGCCTACAAAGGAGGATGTCAAGAGATGCTTCATGCTGGAATTTGACCGTTCTGCATTCATAATCGCTTCTACTGCAACAGAGGAGGAGATGCGCCACTGGTACCGTGATCGCATAGTTTGGACTGACAAGGATTTGAATTTGAAGCTCATGAGAAAGGGTCTGTTGACACGGATATATGCTCCAATGGTCATAGTTCAAGGTTTGAAGGAGGCTGGTGTTTTCAGCAATGCTTTGGCATCTGGGCATGCTGTTCTTAAAAAATCAATGTCTAGAGAGCAGTTCTTGTCATCTGTGTCTGTTTCGAACAGAACTAATTCATCTGTAGCACAGGCTGTTGAAAATAAAGATGGGGATAAGCACCAAGCAAAGTTACTAGAAAAAGTTGGAGAAGGTGAAACTCATGCAGCAACTAGAAAGCTCCTAGAAACATCAATTCACACAGTTATGGCAGTGCCTCCCTTGGCACCTCCATCTTTAGATGTCTACACTGGAAGTTTCTAGGATAATGTGTCTGATTATTTTCATCAATCAATGCATAGCATCTTTCAAAGATTCAGACAGGAATGGTGCTTATGTTTGTCAGATTCATTTAATTTTCAAAATTTTCACACATAGAGAATGTACAGATGGTTATGAAAGTCTACCATTTATAGAAGCCCATGATGGAGTTGAAGATAGTTTCTATGGTTCGAAGCTCTGAAGTGGTGCTTAGGTGCCTTCTGTAGAGCTTGCATTCAGTTTCCATCTTGTCTTGGACGGAGAGAAAGGCACTTTACTGACTATTCTTTGAAGTCCAAATCTGGTTTCAGTCTGGATCGAGGCCTTCCAATGAGTAGAAATATTCCCGATCATTACCCAAGCGCAGCTGTAAAATTAATTTTTGTAGTTGGCAATCTCCTAGATTAGATTGCAGCCATTCAGTTCCTGTGAAATAACAAATGCACTATTGCTTCATATTGCTTTGTTGAGCACTGACAGCATTACTGTCATATTTTGCACAGTAAACTGTCATATATTAGGGGTGTTAACATGGATGCAGAAGAATTGCGAGGATACTCTATTTGGTGCTATTAAACTGACTGATTCAAATTTTGTCTCTGATTTGTCTGATTTCTGATATAAACCTCAGAATAGAATAGAAAGATTATTGTTAGCACCTATCACATCATTTGAATATAAACCTACATTTTTAAGATCTTGTATATTTGGAATCTTTTGGCAAAATTCAATTTATGGTTATGCTGTACATTATCTACTGGAATGAGCTCTGTTCAATTGAATATTGGATATAAGCACGTGTAGGAGTTTCTATTGAGCACAAACAATTTGATGGGATTTGAACATTTTGATGCCCTGGCCTTCGGAAAAATGTTGGACATTTGAATTCTTTAAATAGAATTTCATTTGCATCAGTTCTCTATATTTTTATCACAAAGTTAATCTGCTCTGGTGAATCAAACAGGACCCTCGAAAAGTTATTGCTGAATACTTTTGGCAAATGACCTTTTGAATCTCC

Fln Alignment:

Contig6533___QWRGGLNDPAGRWAGDGNKFPGMSTDSPSN-GHSVTGSDCSDRLAQSVTPTFPYYRGWTFEFAADTRPKICITTSTSAGLDQILPWIYYHKVIGVTNFLLFVEGKAAAANTTAVLENILGVKVVHRTKDLEEKQAKSRIWNETWLSSFFFRPCNYELFVKQSLNMEMAIVMAREANMDWIIHLDTDELLHPAGAREYSLRQLLLDVPNNVDMVVFPNYESAIERDDIKEPFSEVSMFKKNYDHVTKETYFGLYKEATRGNPNYFLTYGNGKAAARVQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRSAFIIASTATEEEMRHWYRDRIVWTDKDLNLKLMRKGLLTRIYAPMVIVQGLKEAGVFSNALASGHAVLKKSMSREQFLXXXXXXXXXXXXXAQAVENKDGDKHQAKLLEKVGEGETHAATRKLLE--TSIHTVMAVPPLAPPSLD
D7SQ21______________QWRGGVTDPATRWSPEAHKFPGMDSSPPTTIGHS-SASDCV-LLSRGSSPSFPYYRDWKFDVGSDLRPKICITTSTSAGLEQILPWMFYHKVIGVSTFFLFVEGKAASPNVSKVLESIPGVKVIFRTKELEEQQAKSRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARNAGMDWILHLDTDELMHPAGATEYSLRQLLHDVPGNVDMVIFPNYESSIERDDIKEPFSEVSMFKKNYDHLPKDTYFGMYKESTRGNPNYFLTYGNGKSVARIQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLNWYREHIVWTDKALNMKLLRKGILTRIYAPMAIIQGLRESGVFSSVIASAPTTL----SKDKFLSTIGSTNSSRAVASESLPSRKFGRSK----------ESQATARKALEIADAASHKAAVPPLSPPGMD

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1124	12		87		0.992554
1127	87		12		0.992554
1129			87	12	0.992554
1184		14		85	0.993533
1227	85		14		0.993533
1229	85		14		0.993533
1230		85	14		0.993533
1301	83		16		0.994512
1348		87		12	0.993502
1349	87		12		0.993502
1350		87	12		0.993502
1352	87		12		0.993502
1353		87	12		0.993502
1354	87			12	0.993502
1360	87	12			0.993502
1365			87	12	0.993502
1368		87	12		0.993502
1671	75		25		0.996473
1875	20			80	0.995493
1876	20	80			0.995493
1877		80		20	0.995493
1878	80		20		0.995493
2020		5		82	0.999919
2170			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain