SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6506

Length: 1841 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6506

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RDT2_RICCO	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	ASK20; ASK21; AT2G45950; At2g45950; At3g61415; F2A19.5; F4I18.7; GSVIVT00026878001; GSVIVT00037678001; LOC_Os03g01660; MtrDRAFT_AC150440g26v2; OSJNBa0009C08.20; Os03g0107000; OsI_09656; OsJ_09097; PHYPADRAFT_136643; POPTRDRAFT_244547; POPTRDRAFT_253989; P

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	SKP1 component	IPR001232	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	SKP1 component, dimerisation	IPR016072	-	-
Sma3	SKP1 component, POZ	IPR016073	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61415.1	ASK21, SK21 SKP1-like 21 chr3:22722962-22725577 REVERSE LENGTH=351	79%
RefSeq	Arabidopsis thaliana	NP_001118876.1	SKP1-like protein 21 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002322481.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX34

Fln msg: your sequence is longer than subject: 246 - 158

Fln protein: MSESLSQREEESHLSMSVTKSMLPGSSLQGVKSFVWLQTVDGSIQEVEQEVAMLCPWICREILQKGLGSSKNFAIVLPPQLNSSILKLILEYCRFHQVPGRSNKERKIFDERFIRLDTKRLCELTSAADSLQMKPLVDLTSRALARMIEGKTPEEIRETFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYARKRKELKERAKLKNVEAEVGHADDRSVEDLLTFINGGDGAKHKAMILGVLDTN*

Protein Length: 247

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACGACTTCCCACTTATAATCGTAATATCAAATACACAGATTCCATTTCGGCCCCGGATTCGAATCTTACCCGAAACACACAGGCTGTAAATTAGTTAGTTACTCAGCTTTAACACGAGTCCAGATGTTTGGCCTCTGCCCGACACATTCCGAGGTTTCCAAGGCATTTTCGTCACAACATTGGAGCTGTTCGAATTCTTCTATCACAATTCAAAACTATCGAATTTCGTCAACAATTCAGCGGGCATTTTAGTTTGATATTCGGCGAACATCAAGATAGCAAGATCGATGAATTATTTTTATTCAGATGCATTTTTTTAAGAAAACGATGCCCGTTTGTACGAGAAAAGCCGACAGGGCTGCAGAAGGTGTCATTGTCTCAGCAGAGATCGGGGTAGTGAAATCGTATTGAAAAGTATGATATTCATAGTTCAATGCCATTATTGAAATTATTACAGGAAACATCCTTAAATCAAGCCAGGGCCACAAGTCCTCAGTTAGGGTTTCAAGTCACAATCTGAAATTTGCCACCGGCCAAATTGGAGAAGCAACTGTAAGAGATTGTGTAGCATGCGGTTTGCCAATGCTCCGGTGGAACCATTTAAAATCGAGGATTGTACCAAGGCGCACAATTTTCATATTGCAGACGGTTGAATGTGGAAACACAGTTTCCGTAATTTTAAATAGAGTCAAAATTTGACGACGTAGTTGTTATATTGATTATTTGGTCTTTCCGGGGTGCGTATATCACAGTTTGGACTAACATTTCGAAGGGACAGTGTGAAAGAACCGTTACCAGATTGCCCTATTTCTAGGGTTTTAAGGTTTACACAGGTTATTTTATATTCCTTGATGAATTATGCGGCTTGAAGACAGAGTCATCTTTGTATAATTATTGATCCTGGTCTTAACTCTCAATATATGCATTTTAAACTAAGCAGCCG_-_ATGTCAGAAAGTCTCAGCCAACGCGAGGAAGAGAGTCACCTTTCCATGAGTGTTACTAAAAGTATGCTGCCCGGAAGTTCTCTACAGGGTGTGAAGTCCTTTGTCTGGCTTCAAACAGTCGATGGGTCTATTCAAGAGGTGGAACAAGAAGTTGCAATGTTATGCCCTTGGATTTGCCGTGAAATATTACAAAAGGGATTAGGTTCTTCAAAAAATTTCGCAATCGTTCTTCCGCCACAACTTAACTCAAGTATTTTGAAGTTGATCTTAGAATACTGTCGTTTTCATCAAGTTCCAGGTCGCTCTAACAAGGAACGAAAAATATTTGATGAAAGGTTTATTCGTCTAGATACAAAGAGGTTATGCGAGCTGACTTCAGCCGCTGATAGCCTTCAGATGAAACCTTTAGTTGATTTGACAAGTCGGGCTCTTGCTAGGATGATTGAAGGGAAAACACCTGAGGAGATTCGAGAAACATTTCATCTGCCAGATGATCTCACAGAGGAGGAGAAGCTGGAACCTTTGAAAAATACCACAGATGATCCTCGAATTAGACTCTTAAATCGACTATATGCAAGAAAACGGAAAGAGCTGAAAGAAAGAGCAAAATTGAAGAATGTTGAAGCAGAGGTAGGGCATGCTGATGACCGATCAGTTGAAGACTTGCTGACTTTCATAAATGGAGGTGATGGAGCAAAGCACAAAGCGATGATTCTAGGCGTCCTGGATACCAATTGA___AAAGTAGATTCAGAGTTACTCACAACTGAAATAGTTGAATATCTTGTTCTATAGGATAGCTCCCCAGGTACATGGGAACTACATACAAGTGAAGATTCTGGTGACAACAAAGATTTGAAAGGAAGCAGAGGAGCG

Fln Alignment:

Contig6506___VWLQTVDGSIQEVEQEVAMLCPWICREILQKGLGSSKNFAIVLPPQLNSSILKLILEYCRFH---QVPGR-----SNKERKIFDERFIRLDTKRLCELTSAADSLQMKPLVDLTSRALARMIEGKTPEEIRETFHLPDDLTEEEKLE
A9NX34______________VSLKSSDDELFDVNEAVAFESQTIKNMIEDTGTAS----AIPLP-NVSSKILSKVIEYCKYHVEAQKPADEKSAISEDEIKTWDQEFVKVDQATLFDLILAANYLNIKDLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
166	11	77		11	0.968132
407	71		28		1.0
441	14		85		0.993533
442		11		88	0.923564
445			88	11	0.923564
488		88		11	0.923564
536		28		71	1.0
652	16		83		0.994512
827	40			60	1.0
829			40	60	1.0
830		60		40	1.0
1065	90		10		0.90298
1142	85	14			0.993533
1273	14	85			0.993533
1275		85		14	0.993533
1276			14	85	0.993533
1277	85		14		0.993533
1278	85		14		0.993533
1279		85	14		0.993533
1280	83			16	0.994512
1652	33		66		0.997452
1653		33	66		0.997452
1656			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain