SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6458

Length: 1276 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6458

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] dbj\|BAC41977.1\| unknown protein [Arabidopsis thaliana] gb\|AAP37706.1\| At4g31530 [Arabidopsis thaliana] gb\|AEE85924.1\| Rossmann-fold NAD(P)-binding domain-containing protein [Ara	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%

Source	Gene names
Sma3	AT4g31530; At4g31530; At4g31530/F3L17_100; CGLD13; CHLREDRAFT_205577; F3L17.100; GSVIVT00022236001; LOC_Os03g23980; MICPUCDRAFT_20482; MICPUN_72027; OSTLU_17427; Os03g0355900; OsI_11606; OsJ_10876; Ot11g02970; PHYPADRAFT_24317; POPTRDRAFT_846814; RCOM_124

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Quinone oxidoreductase putative, YhdH/YhfP	IPR014188	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31530.2	NAD(P)-binding Rossmann-fold superfamily protein chr4:15282281-15284064 FORWARD LENGTH=338	67%
RefSeq	Arabidopsis thaliana	NP_194881.2	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002298302.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPJ0

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 288 - 254

Fln protein: MENLRNRIVCVKTDAESPALSREEQESIKVSSKFVLVVGGTGGVGQLVVARLLDRGVRTRALVRDPEKAETLFGKQDSDKLQILTGDTRHPEELNASVFEGVTDVICCTGTTAFPSKRWDGDNTPERTDWDGIRNLVAALPSSVKRFVLVSSVGVTKFNKLPWSIMNLFGVLKFKKMGEDFLQSSGIAFTIIRPGRLTDGPYTSYDLNTLLKATAGTRRAVLIGQGDELVGEASRIDVAEACIQALYLECTIGQTYEINSVEGVGPGTDPKKWEKIFRDANLKELNA*

Protein Length: 289

Fln nts: ATGGGGAATCTATGATTCAATTCGCAATTTTAACGCCACAGAAAGCTCAGAATGGCCGCATGTTTCAACACACTGTTGCCACATCTTCCACACCTCTGGCGGATTGAATCAGAAGGGGAGAACAATTACGGTTGTTAATAGTCATGTTGGGCTAAGGGCTGGCAGATTCTTGATTGGTCAAGGAAATGAGCTTAAGTTCAAGCGGAAGGTGACG_-_ATGGAGAACCTGCGAAATAGAATTGTGTGCGTGAAAACAGATGCTGAATCGCCTGCGCTGTCACGTGAAGAACAAGAATCCATAAAGGTTTCGTCTAAATTTGTGCTGGTTGTCGGAGGCACTGGCGGAGTCGGGCAGCTTGTTGTGGCAAGATTGCTAGACCGAGGGGTCAGAACACGTGCACTGGTTCGTGATCCAGAAAAGGCAGAGACTTTATTTGGTAAACAGGATAGTGATAAGCTGCAGATTTTGACAGGTGATACACGGCATCCTGAGGAACTTAATGCATCAGTTTTTGAGGGAGTCACAGATGTCATTTGCTGTACTGGAACGACAGCTTTTCCATCCAAGCGCTGGGATGGGGATAACACCCCTGAAAGGACAGATTGGGATGGTATCCGCAATCTTGTAGCTGCATTGCCTTCATCAGTGAAGAGATTTGTTCTTGTCTCATCGGTTGGAGTTACAAAGTTCAACAAACTTCCTTGGAGCATTATGAACCTCTTTGGAGTGCTAAAGTTCAAAAAGATGGGGGAGGATTTTCTTCAGAGTTCTGGTATTGCTTTCACAATTATTAGACCAGGAAGACTTACGGATGGGCCATATACTTCTTATGATCTGAACACTTTGCTTAAAGCAACAGCAGGCACACGCCGTGCTGTATTGATTGGACAAGGGGATGAACTGGTGGGAGAGGCTAGCAGGATTGATGTAGCTGAAGCATGCATACAAGCATTATATTTAGAGTGTACGATTGGTCAGACTTATGAGATCAACTCAGTTGAGGGAGTTGGACCAGGAACTGATCCAAAGAAGTGGGAGAAGATTTTTAGAGATGCTAACTTGAAAGAGTTGAATGCATGACTGAAGCATTTGGCGATTGTATTTAAAGATAACTCTGCCATGGGCTTTTCTGAAGGCATTTCTCTGCTTTGATCTACATTATGAATATGACAAAATCATAATCTTACAGTTTATAGCTTTTATTTCTGGGTGTTCAAGATGTTTTGTTGGTTTTTTTCTATATGATGTGAGAAGGAAATGCTTTGTTGATTGACTGAA

Fln Alignment:

Contig6458___RLLDRGVR--TRALVRDPEKAETLFGKQDSDKLQILTGDTRHPEELNASVFEGVTDVICCTGTTAF------PSKR------WDGDNTPERTDWDGIRNLV-AALPSSVKRFVLVSSVGVTKFNKLPWSIMNLFGVLKFKKMGEDFLQSSGIAFTIIRPGRLTDGPYTSYDLNTLLKATAGTRRAVLIGQGDELVG----EASRIDVAEACIQALYLECTIGQTYEINS--VEGVGPGTDPK
A9NPJ0______________KLKERGGQFVSRGFVRTEESKQKIGGGDD-----VFVGDVRQPETLTP-VFQGVDALVIVTSAVPKMKPGFDPSKGGRPEFYFEDGCYPEQVDWIGQKNQIDAAKAVGAKQIVLVGSMGGTNPNH-PLNSLGNGKILIWKRKAEQYLADSGIPYTIIRAGGLVD--------------KEGGLRQLLVGKDDELLATETKSVPRADVAEVSVQALLIEEAKNKAFDLASKPEEAGSPTTDFK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
928		16		83	0.994512
973	16			83	0.994512
1096	40		60		1.0
1202		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain