SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6449

Length: 1987 nt

UniGene Fasta

>sp_v3.0_unigene6449
CGAACTGAAACCCTGATCATCAATTTATGCTCTACCCTGCAATTTTTTTCCGCTTTCGAAACACCTTGTAACAGCAATGATGAAGGGAAACCTGTGGCCATGGAGCCTGTGCTTGGTCGCCTCTGCCATTGCCATCTTGGCACGCTCGTGCGGGGCTTTAACGCTTTCTTCCAAGATGATACACAGGTTCTCGGATGAGGCTAGGGTCATATGGAGAGAGAGGCACGGGGGAGCCGAGCCTGTGCACTGGCCAAGGAGAGGGAGCGTCGAGTACTACGGGATGCTGTGGAGCCATGACATTAAGCGGAGCTTGCAGAGAAGGGAGCTTCTTGCTGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACTGTTCAGTATGGCGAGAGCTTAGGATGGTTGCATTATACACGGGTTGATATAGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGCGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCGATATATGGTCTGGATAGAGATCTGAGCGTGTACAGCCCTGCTGCGTCTAGTACAAGCAAACACTTATCTTGCACCAACAACCTATGTACATTACGCCATAGTTGCAAAATGAAGAGACAGGCATGTCCCTATATTGTTGAATATTTATCTGACAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTATACTTGGCGTCTGGAAGTGAGCTTGCATCAGGTCATTCAGTAAAGACACGAGTGGTAATTGGTTGTGGCAGAATACAAAGTGGTGGCTTTTTAAATGGTGGGGCTCCAGATGGTCTTCTTGGTTTAGGTCTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCGGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATATTTTTTGGGGACCAAGGGGCATCAGGCCAGAAGACTACACCTTTCCTAGCCTTTAATGGGACACATCCAACATATATTGTTGGAGTTGAAGATATTCATGTTGGCTCAGCAGCAGTAAAAGGCATAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCCTTCACGTATCTGCCTAGTGATGCCTTTAAACACCTTACCAAAGAATTTGATGCACAGGTGCCCTACCCAAAAGCTTACTATGATGGCCTTCCTTGGGATCATTGTTATCAAGCAAGTGGAGGATCTAAGTCATCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGAGGCAAATTTTCTATCTTCAGTCCCATAATAAGGTTGTTTACAGATAATGGGACATTGGAAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAATTTCATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACTTGAAGCTGGGTTGGTCTCCATCTGATTGCTATCAACTAGATGAAGATGAAGGTGTTGTGGCCCCTGCTCCTTCACCACACAATGGCTTGAGAACTCCAACACCTCTACAGCAGCAGCAAACTTCACCAGGACGTGCAATTTCTCCAGCAATAGCAGGGAGAACTCCTAAAATAAACCATTCTGATCGTTTGCAGACAAAATCAAATATTGTAACTTCCATGTTGTTTTCTTTTTCGGTTGGTGTAATTTTGCTCTCTGGATTATGGCATACCAGTACGTCAAGCTACTGAATTTTATTTCCTCACGTGCTTTTAGGATATACTGCACATATTAGTTTCAAGGTTTCTGATTCATAGTGTTTAACTATCCTCTCTACACTAGTATTTAAATGGCTCATTACTGCAACTATTGATTTATTTGTTCCTATCCATTGTATCCTATCAGTATGACATCTAGTTGCTTTTAGTTGAACTTGACAGAGCATGTCTAATGAAACGGGTAACCTTTTTTTGTCCCAGACATGCTTTCAAATATGCTATTTGGCTCACATTACAGAA

Ace file of the UniGene sp_v3.0_unigene6449

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9SSL3_RICCO	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Aspartic-type endopeptidase/ pepsin A	-	-	2.334e-08	-

Source	Gene names
Sma3	80A08_5; AT4G35880; AT4g35880; At2g17760; At3g51330; At4g35880; At5g10080; B1274F11.42; F24M12.370; GSVIVT00011732001; GSVIVT00015278001; GSVIVT00019437001; H0209A05.1; OJ1540_H01.13; OSJNBb0071D01.4; Os02g0751100; Os04g0228000; Os06g0717900; Os09g0542100

Source	GOs	Term	Type	Identity
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA/RNA-binding protein Alba-like	IPR002775	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10080.1	Eukaryotic aspartyl protease family protein chr5:3150843-3153380 FORWARD LENGTH=528	46%
RefSeq	Arabidopsis thaliana	NP_196570.1	aspartic proteinase-like protein 1 [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002307112.1	predicted protein, partial [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P2

Fln msg: your sequence is longer than subject: 548 - 165

Fln protein: MMKGNLWPWSLCLVASAIAILARSCGALTLSSKMIHRFSDEARVIWRERHGGAEPVHWPRRGSVEYYGMLWSHDIKRSLQRRELLAEYQSLYFSQGSETVQYGESLGWLHYTRVDIGTPNISFLVALDTGSDLFWVPCDCIQCAPTSASIYGLDRDLSVYSPAASSTSKHLSCTNNLCTLRHSCKMKRQACPYIVEYLSDNTSTSGSLVEDVLYLASGSELASGHSVKTRVVIGCGRIQSGGFLNGGAPDGLLGLGLSDISVPSLLAKAGLVQNSFSMCFQSDDSGRIFFGDQGASGQKTTPFLAFNGTHPTYIVGVEDIHVGSAAVKGIGFKVLIDSGTSFTYLPSDAFKHLTKEFDAQVPYPKAYYDGLPWDHCYQASGGSKSSDSLTVPVVSLIFKGGGKFSIFSPIIRLFTDNGTLEGFCLAVQEGDFGIIGQNFMTSYRLVFDRENLKLGWSPSDCYQLDEDEGVVAPAPSPHNGLRTPTPLQQQQTSPGRAISPAIAGRTPKINHSDRLQTKSNIVTSMLFSFSVGVILLSGLWHTSTSSY*

Protein Length: 549

Fln nts: CGAACTGAAACCCTGATCATCAATTTATGCTCTACCCTGCAATTTTTTTCCGCTTTCGAAACACCTTGTAACAGCA_-_ATGATGAAGGGAAACCTGTGGCCATGGAGCCTGTGCTTGGTCGCCTCTGCCATTGCCATCTTGGCACGCTCGTGCGGGGCTTTAACGCTTTCTTCCAAGATGATACACAGGTTCTCGGATGAGGCTAGGGTCATATGGAGAGAGAGGCACGGGGGAGCCGAGCCTGTGCACTGGCCAAGGAGAGGGAGCGTCGAGTACTACGGGATGCTGTGGAGCCATGACATTAAGCGGAGCTTGCAGAGAAGGGAGCTTCTTGCTGAGTACCAGTCCCTGTATTTCTCGCAGGGCAGCGAGACTGTTCAGTATGGCGAGAGCTTAGGATGGTTGCATTATACACGGGTTGATATAGGGACACCAAATATATCTTTTTTGGTAGCTCTTGATACTGGAAGCGATCTTTTTTGGGTTCCTTGTGATTGTATACAATGTGCACCTACTTCTGCCTCGATATATGGTCTGGATAGAGATCTGAGCGTGTACAGCCCTGCTGCGTCTAGTACAAGCAAACACTTATCTTGCACCAACAACCTATGTACATTACGCCATAGTTGCAAAATGAAGAGACAGGCATGTCCCTATATTGTTGAATATTTATCTGACAACACATCAACTTCTGGATCATTGGTGGAGGATGTCTTATACTTGGCGTCTGGAAGTGAGCTTGCATCAGGTCATTCAGTAAAGACACGAGTGGTAATTGGTTGTGGCAGAATACAAAGTGGTGGCTTTTTAAATGGTGGGGCTCCAGATGGTCTTCTTGGTTTAGGTCTTTCTGATATTTCAGTTCCAAGTTTGCTTGCAAAAGCGGGATTGGTGCAAAATTCATTTTCAATGTGTTTTCAATCTGATGATTCTGGAAGGATATTTTTTGGGGACCAAGGGGCATCAGGCCAGAAGACTACACCTTTCCTAGCCTTTAATGGGACACATCCAACATATATTGTTGGAGTTGAAGATATTCATGTTGGCTCAGCAGCAGTAAAAGGCATAGGTTTCAAAGTCTTGATTGATAGTGGAACTTCCTTCACGTATCTGCCTAGTGATGCCTTTAAACACCTTACCAAAGAATTTGATGCACAGGTGCCCTACCCAAAAGCTTACTATGATGGCCTTCCTTGGGATCATTGTTATCAAGCAAGTGGAGGATCTAAGTCATCAGATTCTCTTACTGTCCCTGTTGTGTCACTTATTTTCAAAGGAGGAGGCAAATTTTCTATCTTCAGTCCCATAATAAGGTTGTTTACAGATAATGGGACATTGGAAGGTTTTTGCTTGGCAGTACAAGAGGGCGACTTTGGCATAATTGGACAAAATTTCATGACTAGTTATCGCCTGGTCTTTGATCGTGAGAACTTGAAGCTGGGTTGGTCTCCATCTGATTGCTATCAACTAGATGAAGATGAAGGTGTTGTGGCCCCTGCTCCTTCACCACACAATGGCTTGAGAACTCCAACACCTCTACAGCAGCAGCAAACTTCACCAGGACGTGCAATTTCTCCAGCAATAGCAGGGAGAACTCCTAAAATAAACCATTCTGATCGTTTGCAGACAAAATCAAATATTGTAACTTCCATGTTGTTTTCTTTTTCGGTTGGTGTAATTTTGCTCTCTGGATTATGGCATACCAGTACGTCAAGCTACTGA___ATTTTATTTCCTCACGTGCTTTTAGGATATACTGCACATATTAGTTTCAAGGTTTCTGATTCATAGTGTTTAACTATCCTCTCTACACTAGTATTTAAATGGCTCATTACTGCAACTATTGATTTATTTGTTCCTATCCATTGTATCCTATCAGTATGACATCTAGTTGCTTTTAGTTGAACTTGACAGAGCATGTCTAATGAAACGGGTAACCTTTTTTTGTCCCAGACATGCTTTCAAATATGCTATTTGGCTCACATTACAGAA

Fln Alignment:

Contig6449___SSKMIHRFSDEARVIWRERHGGAEPVHWPRRGSVEYYGMLWSHDIKRSLQRRELLAEYQSLYFSQGSETVQYGESLGWLHYTRVDIGTPNISFLVALDTGSDLFWVPCDCIQCAPTSASIYGL
D5A9P2______________SLQMYHKFSNEVKEWMTWRHG-LDTDGWPVEGSNEYYKALYHHDSARHGRK---LADHPSLTFLEGNETVEIPQ-LGFLFYSMVQVGTPNVTLFVALDTGSDVFWVPCDCQACAPTSAASYGL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1096		25		75	0.996473
1216	11			88	0.923564
1281	12		87		0.992554
1284	87			12	0.992554
1285	87			12	0.992554
1301	12	87			0.992554
1302	12	87			0.992554
1303		87		12	0.992554
1304	87		12		0.992554
1328			85	14	0.993533
1329	14		85		0.993533
1330			85	14	0.993533
1356			12	87	0.992554
1357	87		12		0.992554
1361		14	85		0.993533
1363			85	14	0.993533
1364			85	14	0.993533
1380	16			83	0.994512
1721	14		85		0.993533
1755		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain