SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6377

Length: 1669 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6377

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	actin related protein 2/3 complex, subunit 2 [Arabidopsis thaliana] gb\|AAM60850.1\| unknown [Arabidopsis thaliana] dbj\|BAC43079.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63372.1\| At1g30825 [Arabidopsis thaliana] gb\|AEE31281.1\| actin related protein 2	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	Gene names
Sma3	At1g30825; At1g30825/T17H7.13; GSVIVT00020331001; GSVIVT00030553001; OSTLU_8144; Os01g0654300; OsI_03108; OsJ_02859; Ot03g04020; PHYPADRAFT_120950; PHYPADRAFT_146870; POPTRDRAFT_229877; POPTRDRAFT_640177; POPTRDRAFT_711859; POPTRDRAFT_803770; RCOM_0096200

Source	GOs	Term	Type	Identity
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	Arp2/3 protein complex	GO:0005885	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	regulation of actin filament polymerization	GO:0030833	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Arp2/3 complex, 34kDa subunit p34-Arc	IPR007188	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30825.1	ARPC2A, DIS2 Arp2/3 complex, 34 kD subunit p34-Arc chr1:10961106-10962999 FORWARD LENGTH=318	64%
RefSeq	Arabidopsis thaliana	NP_564364.1	actin related protein 2/3 complex, subunit 2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002304616.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD99

Fln msg:

Fln protein: MIVLETPSRFLLQVLLNRIQFLVKAVELDYHLVEFDDVRYHIQATMKDPHHMALSISIPSPPPETVLAGGLPFGAIEAVRGAYGAVMQIVDPAEDGFQLTLKLDLTKLPSNEEARTQLLIKIASLRSVVLGAPLREILKHLASKAVAPDADRLIALTHRPKESFFLIPQPEKVTVVFPMRFRDSIDVVLATSFLQEFMEARRTAGLNNAPPCHWSPSPPLELKGAPAHALNANAGFVSFVIFPRHVEGEKLDRTVWSLSTFHAYVSYHIKCSKSFMHTRMRRRVETLIQALNRARPDVEKEKKTAQGRSFKRHI*

Protein Length: 316

Fln nts: ATGGGGATGCCACTCGTGCCGATTTGGACGCTTTCAAACAGGCTGTCTGTTCAAAACCCTGAATATATGTGTGAGAGGTGTCTGAAACCCCTGCTTACGATATTGACCCGGGATCGATCCTTGGAATTCCCTTACTGATGCCACCAAGGAGCCAGCCCTGAATACGTTTCTATTGATTTGGCTGCC_-_ATGATTGTCTTGGAGACGCCGTCGCGGTTTCTTTTGCAGGTTCTGCTCAATCGCATTCAATTTTTGGTGAAAGCTGTAGAGCTGGATTACCATTTGGTTGAATTTGATGATGTCCGGTACCACATTCAGGCTACAATGAAGGATCCACACCACATGGCATTGTCAATATCAATTCCATCTCCACCGCCTGAGACTGTTTTAGCTGGTGGACTTCCATTTGGTGCGATAGAGGCTGTGAGAGGAGCATATGGTGCTGTAATGCAGATTGTTGATCCTGCGGAAGATGGCTTTCAGCTTACCTTAAAGCTGGATTTGACAAAACTTCCATCAAATGAAGAGGCTCGAACTCAGTTGTTGATAAAGATTGCATCTCTCCGATCAGTGGTTTTAGGGGCACCTTTGAGGGAGATTTTAAAGCATCTTGCTTCCAAGGCAGTTGCTCCTGATGCAGATAGACTAATTGCTCTTACTCACCGTCCTAAGGAGTCTTTCTTTCTCATTCCTCAGCCAGAAAAGGTGACAGTGGTTTTTCCAATGCGCTTCAGGGATAGCATTGATGTTGTACTTGCAACATCCTTTTTGCAGGAGTTTATGGAGGCGAGGCGCACAGCAGGGTTGAATAATGCACCACCTTGTCATTGGTCTCCATCTCCTCCACTAGAGCTGAAAGGAGCTCCTGCTCATGCACTGAATGCAAATGCAGGATTTGTATCATTTGTGATATTTCCTCGTCATGTTGAGGGTGAGAAGTTGGATAGGACTGTTTGGAGTTTATCAACCTTTCATGCTTATGTAAGCTACCATATAAAGTGTTCAAAGAGTTTCATGCACACTAGAATGAGGCGGCGTGTTGAGACTCTGATTCAGGCATTGAACCGTGCAAGACCAGATGTGGAGAAAGAGAAAAAGACAGCACAAGGCCGGTCCTTTAAGCGGCATATATGA___TTTGCAGGAGACCCTATAAATTGATTTTGCTGCGACATTGCTGTTCATTTCCATAATCGTCTGTAGTTGATCGTGGAATAAGATGAAATATCCACATCAGGCTACGTAATGCATTTGTTTGAAGGGTGAGGAAAATGCAACATAAAGGCAAGCAAATCTGGCCTGATTTTTTTATCTCTTTCTTCAGAATATTCATAAATGACTCGTTTCATTGGTACAAAATTCTCAAAGTACTCTGCCTCGTTTGACATTTTAGTTTTAAGGGGTTATAAAGCATTGGAGCTATTCATTTTGCATTTATTAGGCATGAACAAAGAGTGTTGTTAGAAACAAATGTTTGTACAATAAATGCAGCTATTTGAGGGTTCAATGTAATGGATGCCAGGGCGCATCTCTGTATTTTATGCATTGGTTTTTCATAAAATGTCCAGTTCCCAAATGGTTGCACTCTCAAGTGGGGCCATGTGCTCAATGGATGGGACTACTTATCTTGTGCTAGAGACCTCAATATCACCCTCACCTCCCCCGTTGTCGTTTA

Fln Alignment:

Contig6377___MIVLETPSRFLLQVLLNRIQFLVKAVELDYHLVEFDDVRYHIQATMKDPHHMALSISIPSPPPETVLAGGLPFGAIEAVRGAYGAVMQIVDPAEDGFQLTLKLDLTKLPSNEEARTQLLIKIASLRSVVLGAPLREILKHLASKAVAPDADRLIALTHRPKESFFLIPQPEKVTVVFPMRFRDSIDVVLATSFLQEFMEARRTAGLNNAPPCHWSPSPPLELKGAPAHALNANAGFVSFVIFPRHVEGEKLDRTVWSLSTFHAYVSYHIKCSKSFMHTRMRRRVETLIQALNRARPDVEKEKKTAQGRSFKRHI
D5AD99______________MIVLETPSRFLLQVLLNRIQFLVKGVELDYHLVEFDDVRYHLQATMKDPHHMALSISIPTPPPETVLSGGLPFGAIEAVRGAYGAAMQIVDPAEDGFQLTLKLDLTKLPSNEEARTQLLIKIASLRSVVLGAPLREILKHLASKAVAPDADRLIALTHRPKESFFLIPQPEKVTVVFPMRFRDSIDVVLATSFLQEFMEARRTAGLNNAPPCHYSPSPPLELKGAPAHALNANAGFVSFVIFPRHVEGEKLDRTVWSLSTFHAYVSYHIKCSKSFMHTRMRRRVETLIQALNRAKPEVEKEKKTAQGRSFKRHL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
568			75	25	0.996473
569			25	75	0.996473
612	16			83	0.994512
613	16			83	0.994512
614		83		16	0.994512
615		83	16		0.994512
616	83			16	0.994512
637	14		85		0.993533
640	85			14	0.993533
889			88	11	0.923564
890			88	11	0.923564
1290	33			55	1.0
1292	12		87		0.992554
1294	12	87			0.992554
1296			87	12	0.992554
1306		20		80	0.995493
1316		88		11	0.923564
1357		11		88	0.923564
1360	88			11	0.923564
1362			88	11	0.923564
1365		88		11	0.923564
1366			11	88	0.923564
1367		88	11		0.923564
1368			11	88	0.923564
1374	11		88		0.923564
1391		12		87	0.992554
1548		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain