SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6366

Length: 3087 nt

UniGene Fasta

>sp_v3.0_unigene6366
ATGGGGATATATCTGTAATCACAAGCCTTAAAGTTACAGGCCTTCCTTCAAGTTTTCATGTGGGGAGAGAAAAAGTATTTTGAAATTCATATTTCATTTCAGTAAGTGGGAAGTGGAGCCTTCCTTCAAGTTTTCATGCGGGGAGATAAAAAGGATTTTGAAATTCCTATTTCATTTCAGTAAGTGGGAAGTAGGGGATTTCTGCCATGGAAGAAAACAACAGGATATTAACAGGGAAGAGTACAAATTTCAGGTCGATACTCTTCACTGTAACTGCAGCTCTCATATTATTTTCATCTCCAGCCATCGCTATTGATGGGCCCATTAAGTCCATAGTCGTTCTGGTCTTGGAGAATCGTTCATTCGATCATGTGCTGGGCTGGATGAAGAGACTGAACTCAGAAATCGATGGAGTTACAGGCCAGGAATGGAACCCAGAAAGTACTAAAGAGCCAAACTCTGCTAAAGTTTATTTCAGGGATGATGCAGAATACGTAGATCCAGATCCAGGCCACACCTTCGAGGCAGTAATAGAGCAGGTCTTTGGATCGAATCACACTTCTGCTGATCCCCCACTCATGAATGGATTCGTCCAGCAGGCTCTAACTATATCGAAGAATCTGTCACAGATTGTCATGAAAGGATTAAGGCCTGAAGCTCTTCCTGTCTACAAAGAGCTTGTGAAGGAATTTGGGGTATTTGATCGGTGGTTCTCTTCGTTGCCTGGCCCTACTCATCCCAACAGGCTCTTTGTGTACTCTGCAACTTCTCATGGCGCCACGAGCCATATTGCGAAACAGTTAGCAGTTGGGTATCCTCAGAAAACTCTCTTTGAATCACTCCATGAGTCAGGGTTGTCATTTGGGATTTATTACCAGAACATCCCTGCCACTCTGTTTTACAGAAATTTGAGAAAGCTTAAGTACATTCCCAGGTTTCATCACTATGGTCTCAAGTTTAAGCGCCATGCCAGAAAGGGGAAGCTGCCCAATCTAGCGGTTATAGAGCCTCGCTACTTTGATCTCAAGCTCTTTCCTGCCAATGATGACCACCCTGCTCACGATTTATCCAATGGCCAGAGGCTTGTTAAGGAGGTCTATGAGACTCTCAGAGCGAGTCCTCAGTGGAACGAGACGCTTCTGATAGTTACTTATGATGAACATGGTGGGTTTTATGATCATGTGCCTACACCTGTGAGAAATGTCCCAAACCCAGATGGGATTATTGGTCCAAATCCTTCTTTTTTCAAGTTTGATAGATTGGGTGTGAGGGTGCCCACTATCATGGTTTCTCCATGGATCAAGAAAGGCACAGTGATGCACCGTCCCAGTGGGCCAACCCCTACTTCAGAGTTTGAGCATTCATCCATCCCTGCTACTGTCAAGAAGATGTTTAATCTCTCCACCAATTTTCTCACATACAGAGATGCCTGGGCTGGAACTTTTGAAAGTGTCCTGGATCTCAAAGGAGGCCCTCGAACTGATTGCCCTGTTGTTCTGCCCGAACCTAGCGCCATGAGGTCGACCCCTGCAAAGGAAGATGGAAAGCTGAGCGAGTTTCAGAAAGAACTGGTACAGCTCGCTGCAGTCATTAAGGGCGATCACATTCTCAAAAGTTTTCCAGACGAAATTGGGAATCGTATGAATGTGAAAAAAGCAAATGATTATGTTGAAGACGCCATGGAACGGTTTGTGGAAGCAAGTATGGAGGCCATCAAGTTAGGAGCATCAGAGTCCACCATTGTTGAGATGAGGCCTTCTCTTACAACCAGGAACCCTTGAGCCCTGACCATTACCAGACAAAACCCTTTGTTTTATTCCTGCATGTAATGTCAAAGGATGAAGGTAACGTCCTATAGTTAGTCAGGGTCTGTACATGCATGTGGCCCATTTAGTCAGGGTGAAGGCCATTTTTTTATTGTTGAAAGTTGAGAGTTGTGTAATGAATAGGTAGATCCAGTATATAAACACTGGTAGATGGCATCATGGCTGTAACATATCACCAGAATACTATACAATTAAGTTGTCGTATTCCACTGATGTGACAGCCCCATCATATTGCATTATCCTTTTTCTGTCAGTTTCTGCAACTAGATGAATTGATTCAATCTTCTGTAAATCCACTACAGGATGTAATGTAGAACTGGAGGCCGTGTTTATCTCTTTACAGCTGCACCCTGCCAGAAGAATATATGACATGAAAAATGTAAAATTGGCGAGACTTCCAATGTAGAAGTCGAGACCGCTTTTATTTCAAGAAGATTACATAAAAATGTGAAATAGAGGAGATGAAACCCCGGGTTATGTTTCCCGCCATGTTATAAGAGGAACAAAGGGGAACCTGAACTTCTCATTGATTGTGCGTGGACTTGTGGAGTGGAGAGAAGAAAGTAGCGGAAGCAAGAAGGCGAGGATGAAGGTTGTGGCGGCCTACTTGCTTGCTGTACTGGGTGGCAACACCAGTCCCAGTGCAGAGGACATCAAATCTATTCTCGGCTCAGTTGGAGCCGATGCCGATGACGATAAACTAGATTTCCTGTTAAGTCAGCTCGAAGGCAAAGACATAACAGAAGTGATCGCATCCGGAAGGGAGAAATTTGCTGCGGTGCCCTCAGGTGGAGGAGTGGCCGTAGCGGTTTCTGGCGGCGGCGGCGGCGGTGGCGGAGCTCCTGCCGCAGCAGCAGCCGAGCCAGAGGCCAAGAAAGAAGAAAAAGTCGAAGAAAAGGAGGAATCTGACGAGGATATGGGTTTCAGTTTGTTTGATTAAGGTGGTGGAGCGGTATCATTCAAGATGGTACCAATATTTTGTTGTAGGATGAATTTTAGTTTGGTTCAATTTATTTCCTTTGGTATGTAATACAATATTTGTAGGCATTATGCACCCCCCGTAACTGAGATATATTCATGGCGTACATCGGCAATGAAAAGGAAGACAGTTTTAATTGAATGATATTCAATCACATTTTTGAGTATATGAAATTCGTTCTTCAATGAAGATTGGTTTAGGTTGAAATGAATGGCGTGTAAATGAATCTTGCTGTGAATTTAATTCGTAATTCGTTCTTCAATGAAGATTGGTTTATTTTAG

Ace file of the UniGene sp_v3.0_unigene6366

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	non-specific phospholipase C6 [Arabidopsis thaliana] dbj\|BAC22511.1\| phosphatidylglycerol specific phospholipase C [Arabidopsis thaliana] gb\|AEE78437.1\| non-specific phospholipase C6 [Arabidopsis thaliana]	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Phosphatidylglycerol specific phospholipase C	-	-	1.228e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase C.	EC:3.1.4.3	-	3.231e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	3.231e-07	%
Sma3	Glycerophospholipid metabolism	00564	3.231e-07	%
Sma3	Ether lipid metabolism	00565	3.231e-07	%
Sma3	Metabolic pathways	01100	3.231e-07	%

Source	Gene names
Sma3	AL60SRP; AT2G27710; At1g07230; At2g26870; At2g27710; At2g27720; At3g03520; At3g03530; At3g03540; At3g28500; At3g44590; At3g48610; At5g40040; B1139B11.14-1; CHLREDRAFT_195600; F10K1.6; F15K20.18; GSVIVT00000809001; GSVIVT00000811001; GSVIVT00001545001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M4, C-terminal	IPR001570	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Ribosomal protein P2	IPR001859	-	-
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G48610.1	NPC6 non-specific phospholipase C6 chr3:18011653-18013959 REVERSE LENGTH=520	69%
RefSeq	Arabidopsis thaliana	NP_190430.2	non-specific phospholipase C6 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002318737.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR27

Fln msg:

Fln protein: MEENNRILTGKSTNFRSILFTVTAALILFSSPAIAIDGPIKSIVVLVLENRSFDHVLGWMKRLNSEIDGVTGQEWNPESTKEPNSAKVYFRDDAEYVDPDPGHTFEAVIEQVFGSNHTSADPPLMNGFVQQALTISKNLSQIVMKGLRPEALPVYKELVKEFGVFDRWFSSLPGPTHPNRLFVYSATSHGATSHIAKQLAVGYPQKTLFESLHESGLSFGIYYQNIPATLFYRNLRKLKYIPRFHHYGLKFKRHARKGKLPNLAVIEPRYFDLKLFPANDDHPAHDLSNGQRLVKEVYETLRASPQWNETLLIVTYDEHGGFYDHVPTPVRNVPNPDGIIGPNPSFFKFDRLGVRVPTIMVSPWIKKGTVMHRPSGPTPTSEFEHSSIPATVKKMFNLSTNFLTYRDAWAGTFESVLDLKGGPRTDCPVVLPEPSAMRSTPAKEDGKLSEFQKELVQLAAVIKGDHILKSFPDEIGNRMNVKKANDYVEDAMERFVEASMEAIKLGASESTIVEMRPSLTTRNP*

Protein Length: 526

Fln nts: ATGGGGATATATCTGTAATCACAAGCCTTAAAGTTACAGGCCTTCCTTCAAGTTTTCATGTGGGGAGAGAAAAAGTATTTTGAAATTCATATTTCATTTCAGTAAGTGGGAAGTGGAGCCTTCCTTCAAGTTTTCATGCGGGGAGATAAAAAGGATTTTGAAATTCCTATTTCATTTCAGTAAGTGGGAAGTAGGGGATTTCTGCC_-_ATGGAAGAAAACAACAGGATATTAACAGGGAAGAGTACAAATTTCAGGTCGATACTCTTCACTGTAACTGCAGCTCTCATATTATTTTCATCTCCAGCCATCGCTATTGATGGGCCCATTAAGTCCATAGTCGTTCTGGTCTTGGAGAATCGTTCATTCGATCATGTGCTGGGCTGGATGAAGAGACTGAACTCAGAAATCGATGGAGTTACAGGCCAGGAATGGAACCCAGAAAGTACTAAAGAGCCAAACTCTGCTAAAGTTTATTTCAGGGATGATGCAGAATACGTAGATCCAGATCCAGGCCACACCTTCGAGGCAGTAATAGAGCAGGTCTTTGGATCGAATCACACTTCTGCTGATCCCCCACTCATGAATGGATTCGTCCAGCAGGCTCTAACTATATCGAAGAATCTGTCACAGATTGTCATGAAAGGATTAAGGCCTGAAGCTCTTCCTGTCTACAAAGAGCTTGTGAAGGAATTTGGGGTATTTGATCGGTGGTTCTCTTCGTTGCCTGGCCCTACTCATCCCAACAGGCTCTTTGTGTACTCTGCAACTTCTCATGGCGCCACGAGCCATATTGCGAAACAGTTAGCAGTTGGGTATCCTCAGAAAACTCTCTTTGAATCACTCCATGAGTCAGGGTTGTCATTTGGGATTTATTACCAGAACATCCCTGCCACTCTGTTTTACAGAAATTTGAGAAAGCTTAAGTACATTCCCAGGTTTCATCACTATGGTCTCAAGTTTAAGCGCCATGCCAGAAAGGGGAAGCTGCCCAATCTAGCGGTTATAGAGCCTCGCTACTTTGATCTCAAGCTCTTTCCTGCCAATGATGACCACCCTGCTCACGATTTATCCAATGGCCAGAGGCTTGTTAAGGAGGTCTATGAGACTCTCAGAGCGAGTCCTCAGTGGAACGAGACGCTTCTGATAGTTACTTATGATGAACATGGTGGGTTTTATGATCATGTGCCTACACCTGTGAGAAATGTCCCAAACCCAGATGGGATTATTGGTCCAAATCCTTCTTTTTTCAAGTTTGATAGATTGGGTGTGAGGGTGCCCACTATCATGGTTTCTCCATGGATCAAGAAAGGCACAGTGATGCACCGTCCCAGTGGGCCAACCCCTACTTCAGAGTTTGAGCATTCATCCATCCCTGCTACTGTCAAGAAGATGTTTAATCTCTCCACCAATTTTCTCACATACAGAGATGCCTGGGCTGGAACTTTTGAAAGTGTCCTGGATCTCAAAGGAGGCCCTCGAACTGATTGCCCTGTTGTTCTGCCCGAACCTAGCGCCATGAGGTCGACCCCTGCAAAGGAAGATGGAAAGCTGAGCGAGTTTCAGAAAGAACTGGTACAGCTCGCTGCAGTCATTAAGGGCGATCACATTCTCAAAAGTTTTCCAGACGAAATTGGGAATCGTATGAATGTGAAAAAAGCAAATGATTATGTTGAAGACGCCATGGAACGGTTTGTGGAAGCAAGTATGGAGGCCATCAAGTTAGGAGCATCAGAGTCCACCATTGTTGAGATGAGGCCTTCTCTTACAACCAGGAACCCTTGA___GCCCTGACCATTACCAGACAAAACCCTTTGTTTTATTCCTGCATGTAATGTCAAAGGATGAAGGTAACGTCCTATAGTTAGTCAGGGTCTGTACATGCATGTGGCCCATTTAGTCAGGGTGAAGGCCATTTTTTTATTGTTGAAAGTTGAGAGTTGTGTAATGAATAGGTAGATCCAGTATATAAACACTGGTAGATGGCATCATGGCTGTAACATATCACCAGAATACTATACAATTAAGTTGTCGTATTCCACTGATGTGACAGCCCCATCATATTGCATTATCCTTTTTCTGTCAGTTTCTGCAACTAGATGAATTGATTCAATCTTCTGTAAATCCACTACAGGATGTAATGTAGAACTGGAGGCCGTGTTTATCTCTTTACAGCTGCACCCTGCCAGAAGAATATATGACATGAAAAATGTAAAATTGGCGAGACTTCCAATGTAGAAGTCGAGACCGCTTTTATTTCAAGAAGATTACATAAAAATGTGAAATAGAGGAGATGAAACCCCGGGTTATGTTTCCCGCCATGTTATAAGAGGAACAAAGGGGAACCTGAACTTCTCATTGATTGTGCGTGGACTTGTGGAGTGGAGAGAAGAAAGTAGCGGAAGCAAGAAGGCGAGGATGAAGGTTGTGGCGGCCTACTTGCTTGCTGTACTGGGTGGCAACACCAGTCCCAGTGCAGAGGACATCAAATCTATTCTCGGCTCAGTTGGAGCCGATGCCGATGACGATAAACTAGATTTCCTGTTAAGTCAGCTCGAAGGCAAAGACATAACAGAAGTGATCGCATCCGGAAGGGAGAAATTTGCTGCGGTGCCCTCAGGTGGAGGAGTGGCCGTAGCGGTTTCTGGCGGCGGCGGCGGCGGTGGCGGAGCTCCTGCCGCAGCAGCAGCCGAGCCAGAGGCCAAGAAAGAAGAAAAAGTCGAAGAAAAGGAGGAATCTGACGAGGATATGGGTTTCAGTTTGTTTGATTAAGGTGGTGGAGCGGTATCATTCAAGATGGTACCAATATTTTGTTGTAGGATGAATTTTAGTTTGGTTCAATTTATTTCCTTTGGTATGTAATACAATATTTGTAGGCATTATGCACCCCCCGTAACTGAGATATATTCATGGCGTACATCGGCAATGAAAAGGAAGACAGTTTTAATTGAATGATATTCAATCACATTTTTGAGTATATGAAATTCGTTCTTCAATGAAGATTGGTTTAGGTTGAAATGAATGGCGTGTAAATGAATCTTGCTGTGAATTTAATTCGTAATTCGTTCTTCAATGAAGATTGGTTTATTTTAG

Fln Alignment:

Contig6366___AIDGPIKSIVVLVLENRSFDHVLGWMKRLNSEIDGVTGQEWNPESTKEPNSAKVYFRDDAEYVDPDPGHTFEAVIEQVFGSNHTSADPPLMNGFVQQALTIS-KNLSQIVMKGLRPEALPVYKELVKEFGVFDRWFSSLPGPTHPNRLFVYSATSHGATSHIAKQLAVGYPQKTLFESLHESGLSFGIYYQNIPATLFYRNLRKLKYIPRFHHYGLKFKRHARKGKLPNLAVIEPRYFDLKLFPANDDHPAHDLSNGQRLVKEVYETLRASPQWNETLLIVTYDEHGGFYDHVPTPVRNVPNPDGIIGPNPSFFKFDRLGVRVPTIMVSPWIKKGTVMHRPSGPTPTSEFEHSSIPATVKKMFNLSTNFLTYRDAWAGTFESVLDLKGGPRTDCPVVLPEPSAMRSTPAKEDGKLSEFQKELVQLAAVIKGDHILKSFPDEIGNRMNVKKANDYVEDAMERFVEASMEAIKLGASESTIVEMRPSLTTRNP*ALTITRQNP
B8LR27______________SIDGPIKTIVILVMENRSFDHMLGWMKRLNPQINGVTGQESNPISTKDPSSARVFFQDEAEYVDPDPGHSFQAIREQIFGSDNTSANPAPMNGFAQQATSLGGSNMSQTVMNGFRPEVVPVYNTLVNEFAVFDRWFASMPASTQPNRLYVHSATSHGATSNIPKLLADGYPQKTIFESIDESGLSFGIYYEDIPATLFYKNLRKLKYIGKFRSYSTQFKLHAKQGKLPNYVVVEQRYTDTKLLPANDDHPSHDVAEGQKFVKEVYETLRSSPQWNQTLFLITYDEHGGFFDHVPTPVKDVPSPDDIVGPDPFFFKFDRLGVRVPTIMISPWIDKGTVVHGPNGPYPSSQFEHSSIAATVKKLFNLKSDFLTKRDAWAGTFEDVVQKRSSPRTDCPATLPNPPKIRQSGANEEAKLSDFQKELVQLAAILNGDYTLRSYPDEIGKKMNVREGKKYMGDSVRRFFEAGRLAKSLGADDHEIVKMRPSLTTRSTSGSTSNTPRP

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
576	80		20		0.999996
578		20		80	0.999996
591		88		11	0.923564
708		27	72		1.0
748	10	90			0.90298
782		85		14	0.993533
783			83	16	0.994512
1110		85	14		0.993533
1121		88		11	0.923564
1315			85	14	0.993533
1479	88	11			0.923564
1527		83		16	0.994512
1540	16		83		0.994512
1543			83	16	0.994512
1551	16		83		0.994512
1554		33		66	1.0
1566	83			16	0.994512
1637	66		33		1.0
1640	16		83		0.994512
1642	83			16	0.994512
1656	60		40		1.0
1911	12			87	0.992554
1943	28		71		1.0
1965			33	66	1.0
2035		80		20	0.995493
2049		80		20	0.995493
2141	85		14		0.993533
2214			33	66	1.0
2271	80	20			0.995493
2273	80			20	0.995493
2285	75			25	0.996473
2311	66	33			0.997452
2313	66	33			0.997452
2315		66	33		0.997452
2933	97		2		0.999278
2957	98		1		0.994855
2958		3		96	1.0
2961	1	98			0.996855
2973	2			97	0.977325
2976	2		97		0.998771
3007			94	5	1.0
3009		3	1	95	0.918242
3012	94	5			0.9982
3014	11	5	2	80	1.0
3015	6		93		0.99903
3069		20		80	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
2641	2657	GGC GGC GGC GGC GGC GG	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain