SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6341

Length: 1682 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6341 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transketolase, putative n=1 Tax=Ricinus communis RepID=B9T0B2_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Sma3	Transketolase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transketolase.	EC:2.2.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose phosphate pathway	00030	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	134P10.11; AT3G60750; At2g45290; At3g60750; CHLREDRAFT_141319; GSVIVT00018168001; GSVIVT00026404001; GSVIVT00038435001; MICPUCDRAFT_34943; MICPUN_104852; OSIGBa0139I12.3; OSJNBa0072D08.7; OSTLU_16284; Os04g0266900; Os06g0133800; OsI_15126; OsI_21507; OsJ_

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	transketolase activity	GO:0004802	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	pentose-phosphate shunt, oxidative branch	GO:0009051	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, bacterial-like	IPR005478	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60750.1	Transketolase chr3:22454004-22456824 FORWARD LENGTH=741	53%
RefSeq	Arabidopsis thaliana	NP_567103.1	Transketolase [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002315311.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ72

Fln msg: Distance to subject end: 154 aas, atg_distance in limit (1-15): atg_distance = 12, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 513 - 751

Fln protein: MQSWKEELKRIDGFERLNRKECDEDFVQRLIDRRCVDNIRMLVVDAIQNAKAGHPGLPLGMAEVGYVLYRHVMRYNPNNAKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVEVEDLKQLCKLGGRTPGHPENEITAGIEVTTGPLGQGVANAVGFALAERHLAARFNKPDAVIVDHRTFCIMGDGCAMEGISNEAASLAAHWKLNKLTLIYDDNHNTIDGDTSLAFSEDISGRFRALGWNTVTVDNIHESMESFHKALVSAFNETERPTFIKVKTLIGKLSKKEGTAKAHHGIFDDQDVKQMRQKVKWEDREPFHVIPMAYQELQKRAKYGERLEEEWNTMLEIYKQKYPLEAKEFMTFLQGGLPSDWESALPRFSKPDPVDATRGYSEKCLNRIAKVIPGIIGGSADLASSNKVYLKEFEDFKQPESPWGRNIHYGVREHAMAGISNGIALHGSGLIPFAATFLVFSDYMKNSMRLSALSHAGVVYILTHDSIGLGEDGNETAGVYKVAIGH

Protein Length: 514

Fln nts: AATGTCTTGCATTGGAAGAGAAATCCTGAAAGAAATAGTTACAGTTTGACTTCTGCAAGACGTGCGATCAGCATTAGTAACAAAGTGGAAACTGATGTACTAGCCTCTATTGTAGAAGGCAGGGATGAACATGAAAAATATATGCAGTCATGGAAGGAAGAACTTAAAAGAATTGATGGTTTTGAAAGGTTAAATAGAAAAGAGTGTGATGAGGATTTTGTTCAGAGGCTTATAGATAGGAGATGTGTCGATAACATAAGGATGTTGGTGGTTGATGCAATACAGAATGCTAAAGCAGGGCACCCTGGTTTGCCTCTGGGGATGGCAGAGGTTGGGTATGTGTTGTATAGGCATGTCATGAGATACAACCCCAACAATGCAAAATGGTTCAACAGAGATCGTTTTGTTCTCAGTGCAGGACATGGGTGCCTTCTTCAGTACGTATGCTTGCATCTTGCAGGGTTTCAATCTGTTGAGGTCGAAGACCTAAAACAATTATGCAAGTTAGGAGGTCGCACACCTGGTCATCCAGAGAATGAAATTACTGCAGGCATTGAGGTTACTACAGGTCCCCTGGGACAAGGAGTCGCGAATGCAGTGGGTTTTGCTCTTGCAGAGAGACATTTAGCAGCACGGTTCAACAAACCTGATGCAGTGATTGTTGATCACCGGACGTTTTGCATTATGGGAGATGGTTGTGCAATGGAGGGAATATCAAATGAGGCAGCTTCTCTTGCGGCACATTGGAAGCTCAACAAGCTCACACTGATCTATGATGACAACCACAATACGATTGATGGAGATACTAGTCTTGCATTTTCTGAAGACATTTCTGGCCGCTTCAGGGCTCTTGGTTGGAATACAGTTACAGTGGATAACATACATGAAAGCATGGAGTCCTTTCATAAAGCACTTGTTTCTGCTTTCAATGAAACTGAGAGGCCTACATTTATTAAGGTAAAGACCCTGATTGGTAAGTTGTCCAAGAAGGAAGGAACAGCCAAAGCTCATCATGGAATATTTGATGATCAAGATGTGAAGCAGATGAGGCAAAAAGTGAAATGGGAAGACAGAGAACCATTCCATGTTATTCCAATGGCCTACCAAGAACTGCAGAAGCGAGCAAAATATGGAGAAAGACTGGAAGAAGAATGGAACACAATGCTTGAAATATATAAACAGAAATATCCTCTTGAGGCGAAAGAATTCATGACTTTTCTTCAGGGTGGACTTCCTTCTGATTGGGAATCTGCTCTGCCAAGATTCTCGAAACCAGATCCAGTAGATGCAACACGTGGGTATTCTGAAAAGTGCTTGAATCGAATTGCAAAAGTCATACCTGGTATAATAGGAGGAAGTGCTGACCTTGCAAGCTCAAACAAAGTCTACCTAAAAGAATTCGAGGATTTCAAGCAGCCAGAAAGCCCTTGGGGCCGAAACATCCATTATGGTGTGCGAGAGCATGCCATGGCTGGGATCTCTAACGGAATTGCCTTGCATGGTAGTGGGTTAATCCCATTTGCAGCGACTTTCCTTGTGTTTTCAGACTACATGAAGAATTCAATGAGGCTATCTGCTCTCAGCCATGCTGGAGTGGTGTACATACTAACTCATGATTCAATAGGTCTAGGGGAAGATGGCAATGAAACAGCAGGTGTATACAAAGTAGCAATTGGACACAG

Fln Alignment:

Contig6341___RCVDNIRMLVVDAIQNAKAGHPGLPLGMAEVGYVLYRHVMRYNPNNAKWFNRDRFVLSAGHGCLLQYVCLHLAGFQSVEVEDLKQLCKLGGRTPGHPENEITAGIEVTTGPLGQGVANAVGFALAERHLAARFNKPDAVIVDHRTFCIMGDGCAMEGISNEAASLAAHWKLNKLTLIYDDNHNTIDGDTSLAFSEDISGRFRALGWNTVTVDNIHESMESFHKALVSAFNETERPTFIKVKTLIGKLSKKEGTAKAHHG-IFDDQDVKQMRQKVKWEDREPFHVIPMAYQELQKRAKYGERLEEEWNTMLEIYKQKYPLEAKEFMTFLQGGLPSDWESALPRFSKPDPVDATRGYSEKCLNRIAKVIPGIIGGSADLASSNKVYLKEFEDFKQPESPWGRNIHYGVREHAMAGISNGIALHGSGLIPFAATFLVFSDYMKNSMRLSALSHAGVVYILTHDSIGLGE--------------------------DGNETAGVYKVAI
C0PQ72______________KSINAIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLYLAGYDSVKEEDLKGFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARYNKPDSTIVDHYTYCIVGDGCQMEGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVTTRFEGLGWHTIWVKNGNTGYDEIRAAIEEAKSVKDRPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVDATRQNLGW-PHPPFHVPEEVKSHWSRHAARGASFEAEWSSKLAEHEKKYPEEAAEFKALISGKLPEGWDKALPAYTTESPADATRILSQQCLNALAKVLPGLLGGSADLASSNMTLLKMFGDF-QKDTPAERNVRFGVREHSMGAICNGIAHHGSGLIPYCATFFVFTDYMRAAIRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNVLMLRPADGNETAGAYKVAV

SNPs (tot: 4)

Position	C %	G %	T %	Probability
495		80	20	0.995493
875	71		28	1.0
1350	80		20	0.995493
1444	60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain