SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6340

Length: 2368 nt

UniGene Fasta

>sp_v3.0_unigene6340
ATGGGGAGAACCATCCAAAATCAATGCTGAAAAGATTTTTTGGATGGATTGTTTGGCCACTCAAATATCTATTTAATGTGTTACTGCCTTTCTCTAATTCTTCCAGAAATTCTACAGGGTGGACTAGATCGTTGCTTGCTTCTCCAAGTAGCAGAGGAAGTTTCAGCCACATGTATGGATTGGCAAGCAAAAGAATGAACAGCTTCAAAGATCATGTAGTTCATCGTACTACGGATCGGAGACGTGGCGTAGTTGAGGATCTTCAGCTTGTTATAGAGATTGTTATAGAAGTTGCATTTGATATTGTGCGTAAAGCACTTTACTTTCTCCTGTCTCCTTTCGAAACATGTAGGTTGGCCTTCAAAAGGCTCATCACAAGTATACAGGGTTGCAAAAGTGATGGCATGTCTGCTAGTGATAATGATGTTCATGTGCAAACATCTACTCTTAATGATTGGGATCCAAGTTCCACTTTTCGACAAACAAAATTTCAGCAATCCTTGAATACAGATGCACGCACATGTGGAGATGTTATAACAGAATTGGGATATCCATATGAGGCTATTCGCGTCATTACTGCTGATGGTTATGTCCTCCTCCTGGAAAGAATACCGAGACGTGATTCAAGGAAGGTTGTTTACTTACAGCATGGATTGTTGGATTCTTCTTTGGGTTGGGTGTCAAATGGAGTAGTTGGCTCTCAAGCATTTGCAGCTTATGATCAAGGTTATGATGTTTTTCTGGGGAATTTTCGAGGTTTGGTTTCCAGAGAACACATAGACAATCGCATCTCTTCTCAACGGTACTGGAGGTATTCAATCAATGAACATGGAACACAAGACATCCCTGCAATGATTGAAAAAATCCATGAGATAAAGATATCTGAGCTAAGACAGTTGAGATCCGATACTGAATCTTCTGCTGAAACAGACAGTCTTCCTTATTCGATCTGTGCTGTTTCCCACAGTCTTGGTGGAGCTGCCATGTTGATGTATTTAGTGACTAGGTGCCTGAAAGGCCTTCCACATCGACTTTCAAGAGTGACTCTTTTATCACCTGCGGGATTTCATGAGGATGCTGCCATGTTCTTCAAATTATTTGAGTATTTTTTTCCTATTTTTGCTCCAGTTTTAGCTCCCTTGATACCTGGACTATATATACCTACCAAATTTTTTCGGATGCTTTTTCACAAATTAGCTCGGGATTTTCAGAATTATCCTGCAATAGGAGGACTTGTACAGACCTTGATCAGCTATGTTGTTGGAGGTGATAGCTCAAATTGGGTGGGTGTGATAGGTACACCACACTATAATATGAATGACATGCCAGGGGTCTCCTATCGGGTTGCGGTACACTTAGCACAGATGAAACATGAAAAGAAATTTCTTATGTATGATTTTGGGAGTTCATCTGCCAATATGGAAGCCTATGGTATGCCTTACCCATTAGACATTGCGGCAAACTATGGTGTCATTGATGTTCCAGTTGATGTAGTTGCTGGTCAAAAGGATAGACTCATACCTCGTTCCATGGTGTTGAAGCACTACCGGATGTTGAAGGAAGCTGGAGTCAAAGTATCATATGAAGAGTTTGATTATGCTCACCTTGACTTCACTTTTTCTCACAAGGAGGAGATTCTCACATATGTTATGTCAAGACTCCTGCTTGGGTCATCACCAACAACAAAATCAAGGAAGTCTGGTTATGGCAGTCAGAAATATCAAGGGAGTAGGGACAAGAGAAAGTCCAGCAAACGTCTATCTCGCAAATCATTTGGCAAGCAAGACAGCATTTCTCCAGTCGACAAATTGCCTGAAGAACCAACGAGTCCCATTTCAGGCTGCAGTTCTTCTGAAGGATCTTCAACGTCAGCCAATGCATAGCTTAGTGGAAGCCCACATGGAAAAAAAACTGTTTTCAGTGATATTTGGAAAGGAAGATGCAGACAGATTAGTATTTAATTGCCAAGTTCATCGACATGGTGGGCTTCAGAAAATATATGAAAATTTATTATCAATTCTGCTTATAGGTATTTCCTGTTGAAACTATGACCCTGGTATGTTGCCTAATTTTTTCTATATTTAATTTAGTATCACTTTACTATGGCCATCAAAGCTTATATTTAAGCACAGGTTGGGGTGTGATATGATTTCATTTATGGGAATTGTTTTTAATTGTCATTTTTTTGGGCTTTTATTAAATTGCCCATGTCTGAGACTTCTTAACAAAGCATTTGCTAGAAGTGACAAGTGAAACTGGGAAACACTTTTTTTCTCTGCTATTACAGAGCTGAAACCAATTCATTTCTCCTTGTTTTTTGCATGTCAAATGATACACCTTTCATGTGGAAACATGAAATGTATATACA

Ace file of the UniGene sp_v3.0_unigene6340

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AEE35525.1\| alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	sp=Triacylglycerol lipase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	24%
Sma3	Putative lipase	-	-	1.023e-06	-

Source	Gene names
Sma3	At1g18460; At1g73920; CHLREDRAFT_108522; F2P9.21; GSVIVT00012457001; GSVIVT00017638001; LIPG1; Os01g0521400; OsI_02217; OsI_02218; OsJ_02027; P0516D04.4; PHYPADRAFT_168700; PHYPADRAFT_176979; PHYPADRAFT_194155; POPTRDRAFT_823306; RCOM_1617480; VITISV_0270

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	folic acid-containing compound biosynthetic process	GO:0009396	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetrahydrofolate dehydrogenase/cyclohydrolase	IPR000672	-	0.0	-
Sma3	Partial AB-hydrolase lipase domain	IPR006693	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73920.1	alpha/beta-Hydrolases superfamily protein chr1:27791194-27794698 FORWARD LENGTH=704	58%
RefSeq	Arabidopsis thaliana	NP_849883.1	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002318568.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q67ZU1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 620 - 418

Fln protein: MLKRFFGWIVWPLKYLFNVLLPFSNSSRNSTGWTRSLLASPSSRGSFSHMYGLASKRMNSFKDHVVHRTTDRRRGVVEDLQLVIEIVIEVAFDIVRKALYFLLSPFETCRLAFKRLITSIQGCKSDGMSASDNDVHVQTSTLNDWDPSSTFRQTKFQQSLNTDARTCGDVITELGYPYEAIRVITADGYVLLLERIPRRDSRKVVYLQHGLLDSSLGWVSNGVVGSQAFAAYDQGYDVFLGNFRGLVSREHIDNRISSQRYWRYSINEHGTQDIPAMIEKIHEIKISELRQLRSDTESSAETDSLPYSICAVSHSLGGAAMLMYLVTRCLKGLPHRLSRVTLLSPAGFHEDAAMFFKLFEYFFPIFAPVLAPLIPGLYIPTKFFRMLFHKLARDFQNYPAIGGLVQTLISYVVGGDSSNWVGVIGTPHYNMNDMPGVSYRVAVHLAQMKHEKKFLMYDFGSSSANMEAYGMPYPLDIAANYGVIDVPVDVVAGQKDRLIPRSMVLKHYRMLKEAGVKVSYEEFDYAHLDFTFSHKEEILTYVMSRLLLGSSPTTKSRKSGYGSQKYQGSRDKRKSSKRLSRKSFGKQDSISPVDKLPEEPTSPISGCSSSEGSSTSANA*

Protein Length: 621

Fln nts: ATGGGGAGAACCATCCAAAATCA_-_ATGCTGAAAAGATTTTTTGGATGGATTGTTTGGCCACTCAAATATCTATTTAATGTGTTACTGCCTTTCTCTAATTCTTCCAGAAATTCTACAGGGTGGACTAGATCGTTGCTTGCTTCTCCAAGTAGCAGAGGAAGTTTCAGCCACATGTATGGATTGGCAAGCAAAAGAATGAACAGCTTCAAAGATCATGTAGTTCATCGTACTACGGATCGGAGACGTGGCGTAGTTGAGGATCTTCAGCTTGTTATAGAGATTGTTATAGAAGTTGCATTTGATATTGTGCGTAAAGCACTTTACTTTCTCCTGTCTCCTTTCGAAACATGTAGGTTGGCCTTCAAAAGGCTCATCACAAGTATACAGGGTTGCAAAAGTGATGGCATGTCTGCTAGTGATAATGATGTTCATGTGCAAACATCTACTCTTAATGATTGGGATCCAAGTTCCACTTTTCGACAAACAAAATTTCAGCAATCCTTGAATACAGATGCACGCACATGTGGAGATGTTATAACAGAATTGGGATATCCATATGAGGCTATTCGCGTCATTACTGCTGATGGTTATGTCCTCCTCCTGGAAAGAATACCGAGACGTGATTCAAGGAAGGTTGTTTACTTACAGCATGGATTGTTGGATTCTTCTTTGGGTTGGGTGTCAAATGGAGTAGTTGGCTCTCAAGCATTTGCAGCTTATGATCAAGGTTATGATGTTTTTCTGGGGAATTTTCGAGGTTTGGTTTCCAGAGAACACATAGACAATCGCATCTCTTCTCAACGGTACTGGAGGTATTCAATCAATGAACATGGAACACAAGACATCCCTGCAATGATTGAAAAAATCCATGAGATAAAGATATCTGAGCTAAGACAGTTGAGATCCGATACTGAATCTTCTGCTGAAACAGACAGTCTTCCTTATTCGATCTGTGCTGTTTCCCACAGTCTTGGTGGAGCTGCCATGTTGATGTATTTAGTGACTAGGTGCCTGAAAGGCCTTCCACATCGACTTTCAAGAGTGACTCTTTTATCACCTGCGGGATTTCATGAGGATGCTGCCATGTTCTTCAAATTATTTGAGTATTTTTTTCCTATTTTTGCTCCAGTTTTAGCTCCCTTGATACCTGGACTATATATACCTACCAAATTTTTTCGGATGCTTTTTCACAAATTAGCTCGGGATTTTCAGAATTATCCTGCAATAGGAGGACTTGTACAGACCTTGATCAGCTATGTTGTTGGAGGTGATAGCTCAAATTGGGTGGGTGTGATAGGTACACCACACTATAATATGAATGACATGCCAGGGGTCTCCTATCGGGTTGCGGTACACTTAGCACAGATGAAACATGAAAAGAAATTTCTTATGTATGATTTTGGGAGTTCATCTGCCAATATGGAAGCCTATGGTATGCCTTACCCATTAGACATTGCGGCAAACTATGGTGTCATTGATGTTCCAGTTGATGTAGTTGCTGGTCAAAAGGATAGACTCATACCTCGTTCCATGGTGTTGAAGCACTACCGGATGTTGAAGGAAGCTGGAGTCAAAGTATCATATGAAGAGTTTGATTATGCTCACCTTGACTTCACTTTTTCTCACAAGGAGGAGATTCTCACATATGTTATGTCAAGACTCCTGCTTGGGTCATCACCAACAACAAAATCAAGGAAGTCTGGTTATGGCAGTCAGAAATATCAAGGGAGTAGGGACAAGAGAAAGTCCAGCAAACGTCTATCTCGCAAATCATTTGGCAAGCAAGACAGCATTTCTCCAGTCGACAAATTGCCTGAAGAACCAACGAGTCCCATTTCAGGCTGCAGTTCTTCTGAAGGATCTTCAACGTCAGCCAATGCATAGCTTAGTGGAAGCCCACATGGAAAAAAAACTGTTTTCAGTGATATTTGGAAAGGAAGATGCAGACAGATTAGTATTTAATTGCCAAGTTCATCGACATGGTGGGCTTCAGAAAATATATGAAAATTTATTATCAATTCTGCTTATAGGTATTTCCTGTTGAAACTATGACCCTGGTATGTTGCCTAATTTTTTCTATATTTAATTTAGTATCACTTTACTATGGCCATCAAAGCTTATATTTAAGCACAGGTTGGGGTGTGATATGATTTCATTTATGGGAATTGTTTTTAATTGTCATTTTTTTGGGCTTTTATTAAATTGCCCATGTCTGAGACTTCTTAACAAAGCATTTGCTAGAAGTGACAAGTGAAACTGGGAAACACTTTTTTTCTCTGCTATTACAGAGCTGAAACCAATTCATTTCTCCTTGTTTTTTGCATGTCAAATGATACACCTTTCATGTGGAAACATGAAATGTATATACA

Fln Alignment:

Contig6340___CGDVITELGYPYEAIRVITADGYVLLLERIPRRDS---------RKVVYLQHGLLDSSLGWVSNGVVGSQAFAAYDQGYDVFLGNFRGL-VSREHIDNRISSQRYWRYSINEHGTQDIPAMIEKIHEIKISELRQLRSDTESSAETDSLPYSICAVSHSLGGAAMLMYLVTRCLKGLPHRLSRVTLLSPAGF--HEDAAMFFKLFEYFFPIFAPVLA--PLIPGLYIPTKFFRMLFHKLARDFQNYPAIGGLVQTLISYVVGGDSSNWVGVIGTPHYNMNDMPGVSYRVAVHLAQMKHEKKFLMYDFGSSSANMEAYG-----------MPYPLDIAANYGVIDVPVDVVAGQKDRLIPRSMVLKHYRMLKEAGVKVSYEEFDYAHLDF
Q67ZU1______________CASSVHIFGYKCEEHDVVTQDGYILNMQRIPEGRAGAVAGDGGKRQPVLIQHGILVDGMSWLLNPADQNLPLILADQGFDVWMGNTRGTRFSRRHKYLNPSQRAFWNWTWDELVSYDLPAMFDHIHGLTGQKIHYL--------------------GHSLG---TLIGFASFSEKGLVDQVRSAAMLSPVAYLSHMTTVIGDIAAKTFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCYD----------LVSVITGKNCCLNASTIDL--FLANEPQSTSTKNMIHLAQTVRDKELRKYNYGSSDRNIKHYGQAIPPAYNISAIPHELPLFFSYGGLDSLADV----KD----VEFLLDQFKYHDIDKMNVQFVK-DYAHADF

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
81	25			75	0.996473
154	20		80		0.995493
386	20		80		0.995493
415	10		90		0.90298
536	85	14			0.993533
541	85		14		0.993533
592	12			87	0.992554
594	12	87			0.992554
596		75		25	1.0
728	16			83	0.994512
729		16		83	0.994512
732			83	16	0.994512
819	80			20	0.995493
905		66		33	1.0
1586	89			10	0.999919
1893	53		46		1.0
1951	85	14			0.993533
1952			14	85	0.993533
1954	85	14			0.993533
1958		14		85	0.993533
1961	85		14		0.993533
1962	85		14		0.993533
1963		14		85	0.993533
1966		85		14	0.993533
2030		14	85		0.993533
2033	85	14			0.993533
2034			14	85	0.993533
2036			14	85	0.993533
2037	14	85			0.993533
2040		14	85		0.993533
2046	87		12		0.992554
2049	87		12		0.992554
2051		12	87		0.992554
2054		87		12	0.992554
2056	12			87	0.992554
2138	14		85		0.993533
2140		14	85		0.993533
2142			85	14	0.993533
2143		11		88	0.923564
2145	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain