SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6283

Length: 2552 nt

UniGene Fasta

>sp_v3.0_unigene6283
ACTTTCCTACCATCCTGAAACTTCAAAGCAGTCTGCCCTTGTAGTTGTAAGTGATAGATCAAAAGGAGGTTCAATCATTGGTAAAGCCCTTGAACACTTCCTGATGGACGCCTATTTGAAAGGGGAGTTAGTTGGAGTTATTGGGATAGGAGGAAGTGGAGGAACTTCTTTCATTGCTCCTTCTCTAAGGGCCCTTCCCCTTGGAGTGCCGAAGTTCATAGTTTCTACAGTAGCAAGTGGCCAAACAGCTCCTTATATTGGAACATCTGATCTAGTATTGATTCCTTCGGTGGTGGATTTGAGTGGGCTTAACAGTGTAAGTAGGACTGTATTGTTCAATGCAGCAGCTGCAGCAGCAGGGGTGATTGCTGGCAGAATGATGGGAATGGGTGCTTTAAAAAACGAAGACAAACATACAAGTGTAGGTATGACCATGTTTGGGGTGACCACACCCTGTGTGAATACCGTGAAAGAAAGTCTAGATGCAAAAGGCTATGAGACATTAGTATTTCATGCAACTGGGGTTGGAGGTAAAGCCATGGAAGAGCTAGTAACAGGAGGATTTTTACAGGGAATTTTAGACATTACAACCACAGAAGTTGCTGATTACATAGTGGGAGGCGTCATGGAATGCAATGAACAGCGTTTTGATGCCATTTTAAAGAAGAAGATTCCATTAGTTCTCAGTGTAGGGGCTTTGGATATGGTGAACTTTGGACCTAAAGATACAATTCCGTCTCATTTTAATCACCGAAGTTTTCATGTGCACAATGACCAAGTAACTCTCATGCGAACTACAGTGGAGGAGAACACGAAATTCGCGAAGTTCATCTCTAAGAAGCTCAATAATTCCTCTTCTCCAGTGAGGATATTGCTTCCTGAGAAGGGCGTGTCTGCTTTAGATGCTCCTGGTAAGCCTTTCTATGATCCACAAGCAACGGGCACACTGATTGAAGTGTTAGAGAGATCCATTCAAAAAACCAGGGAACGACAGGTTAGGAGACTTCCTTACCACATCAATGATCCAGAGTTTGCAGATGCATTAGTGGATGCCTTCTTGGAGATTGCTACAATGAAGCCTAAAATAATAAAATCTCCTCTTCCTCAAGATGAAACGCAAAGGGGAGGTGAACTTTTGAATAAGAAGGAAATTGAATCTCAACAGTATTTGACAGATTATAAGATAGTTCAACATCCATTAAACGAATTCCCTGATGCCAAACCAGAAACGTTGAAAACAACACGAACCATACTGCAAAGTCTTAAAGACCAAATTGCTCGAGGTGTGCCAATAATTGGGGCTGGAGCAGGAACTGGAATATCTGCTAAGTTTGAAGAAGAAGGCGGTGTAGATATGATAATTATATATAACTCTGGACGCTTTCGCATGGCAGGAAGAGGTTCCTTAGCTGGTTTGCTACCTTTTGCAGATGCTAATGCAGTAGTACTTGATATGGCCAATGAGGTCCTACCAGTTGTAAAAAGAGTACCAGTTCTAGCTGGTGTTTGCGGTACAGATCCATTTAGGCGGATGGATAGCTTTTTGCGGCAGCTAGAGTCTATTGGTTTTGCAGGAGTTCAAAACTTTCCTACTGTTGGTCTATTCGATGGTAATTTTCGCCAAAATCTAGAGGAAACTGGCATGGGATATAGGTTGGAGGTTGATGTGATTCACAAAGCACATAAGATGGGTTTGTTGACCACCCCATATGCATTCAATGAAGCGGAAGCTTCTGTAATGGCAGCTGCAGGTTCTGACATCATTGTTGCACATATGGGGCTCACAACTTCAGGGTCTATCGGTGCAAAAACAGCTCTCTCTTTGGATGACAGTGTTGCACGTGTGCAAGCGATTACTGATGCTGCTGCCCGAGTAAATCCAAATGTGATTATGTTATGCCATGGAGGTCCTATTTCAGGTCCCAAAGAGGCAGAATATGTGCTTCAGAGGACAAGAGGAGTCCATGGCTTCTATGGAGCATCGAGCATGGAGAGGCTACCAGTAGAAGAGGCCATTGTGAAGACTATAAAACAGTACAAAACCATATCAGCGTCATCATAGACACAGGAAAAAGGGGTAGGCATGCCAAGGAATTAGAAGTTGGCCTGTTAAATTACTGATCTTGCGACCACAATATGGGAATCAGAATGAGTATGGGAATTAGGAGAATATCACTTTGCTGACATTCCGTAATGTGTCCTCGTGGATTTTTTTCTTATGCATGTGTCTTATGTGGGGAATTTCTCTCTTCTATTGGGTGTAATAAATCATTGTGGGAGTATGCTCTATTGACTGTGGGCATGAAAAAAATCCTCTGTACTTAATCCACTTCCAAGATTCCTATTAAAATGCATTAAGATATCCATGTGTATTTTCTTGTATTTCGACACCTACAACAGAGGAATTTCAATGAATCTAAATGGTAAATATGAAGAAAATTGCACATTGGTTTGTGTGCACGATGTAAAACACTTCTTAGGAGGGATCCTGTATAAGGTTTGATTTTAAACGTGTATAAGATGACATCTCCAAATGAATCATAAGTATCTTT

Ace file of the UniGene sp_v3.0_unigene6283

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0261 multi-domain protein	-	-	0.0	49%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	66%

Source	Gene names
Sma3	AT5G66420; At5g66420; GSVIVT00010343001; GSVIVT00033741001; GSVIVT00036910001; GSVIVT00036914001; MA4_54N07.10; MA4_54N07.8; Os06g0472400; OsI_22945; OsJ_21334; P0633D04.3; POPTRDRAFT_219355; POPTRDRAFT_796765; RCOM_0534960; Tm-1^GCR237; VITISV_031148; tm

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Uncharacterised protein family UPF0261	IPR008322	-	-
Sma3	TIM-barrel signal transduction protein, predicted	IPR009215	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66420.2	" LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predic	65%
RefSeq	Arabidopsis thaliana	NP_001032163.1	uncharacterized protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002310260.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F2E8H9

Fln msg: your sequence is shorter than subject: 687 - 742

Fln protein: LSYHPETSKQSALVVVSDRSKGGSIIGKALEHFLMDAYLKGELVGVIGIGGSGGTSFIAPSLRALPLGVPKFIVSTVASGQTAPYIGTSDLVLIPSVVDLSGLNSVSRTVLFNAAAAAAGVIAGRMMGMGALKNEDKHTSVGMTMFGVTTPCVNTVKESLDAKGYETLVFHATGVGGKAMEELVTGGFLQGILDITTTEVADYIVGGVMECNEQRFDAILKKKIPLVLSVGALDMVNFGPKDTIPSHFNHRSFHVHNDQVTLMRTTVEENTKFAKFISKKLNNSSSPVRILLPEKGVSALDAPGKPFYDPQATGTLIEVLERSIQKTRERQVRRLPYHINDPEFADALVDAFLEIATMKPKIIKSPLPQDETQRGGELLNKKEIESQQYLTDYKIVQHPLNEFPDAKPETLKTTRTILQSLKDQIARGVPIIGAGAGTGISAKFEEEGGVDMIIIYNSGRFRMAGRGSLAGLLPFADANAVVLDMANEVLPVVKRVPVLAGVCGTDPFRRMDSFLRQLESIGFAGVQNFPTVGLFDGNFRQNLEETGMGYRLEVDVIHKAHKMGLLTTPYAFNEAEASVMAAAGSDIIVAHMGLTTSGSIGAKTALSLDDSVARVQAITDAAARVNPNVIMLCHGGPISGPKEAEYVLQRTRGVHGFYGASSMERLPVEEAIVKTIKQYKTISASS*

Protein Length: 688

Fln nts: ACTTTCCTACCATCCTGAAACTTCAAAGCAGTCTGCCCTTGTAGTTGTAAGTGATAGATCAAAAGGAGGTTCAATCATTGGTAAAGCCCTTGAACACTTCCTGATGGACGCCTATTTGAAAGGGGAGTTAGTTGGAGTTATTGGGATAGGAGGAAGTGGAGGAACTTCTTTCATTGCTCCTTCTCTAAGGGCCCTTCCCCTTGGAGTGCCGAAGTTCATAGTTTCTACAGTAGCAAGTGGCCAAACAGCTCCTTATATTGGAACATCTGATCTAGTATTGATTCCTTCGGTGGTGGATTTGAGTGGGCTTAACAGTGTAAGTAGGACTGTATTGTTCAATGCAGCAGCTGCAGCAGCAGGGGTGATTGCTGGCAGAATGATGGGAATGGGTGCTTTAAAAAACGAAGACAAACATACAAGTGTAGGTATGACCATGTTTGGGGTGACCACACCCTGTGTGAATACCGTGAAAGAAAGTCTAGATGCAAAAGGCTATGAGACATTAGTATTTCATGCAACTGGGGTTGGAGGTAAAGCCATGGAAGAGCTAGTAACAGGAGGATTTTTACAGGGAATTTTAGACATTACAACCACAGAAGTTGCTGATTACATAGTGGGAGGCGTCATGGAATGCAATGAACAGCGTTTTGATGCCATTTTAAAGAAGAAGATTCCATTAGTTCTCAGTGTAGGGGCTTTGGATATGGTGAACTTTGGACCTAAAGATACAATTCCGTCTCATTTTAATCACCGAAGTTTTCATGTGCACAATGACCAAGTAACTCTCATGCGAACTACAGTGGAGGAGAACACGAAATTCGCGAAGTTCATCTCTAAGAAGCTCAATAATTCCTCTTCTCCAGTGAGGATATTGCTTCCTGAGAAGGGCGTGTCTGCTTTAGATGCTCCTGGTAAGCCTTTCTATGATCCACAAGCAACGGGCACACTGATTGAAGTGTTAGAGAGATCCATTCAAAAAACCAGGGAACGACAGGTTAGGAGACTTCCTTACCACATCAATGATCCAGAGTTTGCAGATGCATTAGTGGATGCCTTCTTGGAGATTGCTACAATGAAGCCTAAAATAATAAAATCTCCTCTTCCTCAAGATGAAACGCAAAGGGGAGGTGAACTTTTGAATAAGAAGGAAATTGAATCTCAACAGTATTTGACAGATTATAAGATAGTTCAACATCCATTAAACGAATTCCCTGATGCCAAACCAGAAACGTTGAAAACAACACGAACCATACTGCAAAGTCTTAAAGACCAAATTGCTCGAGGTGTGCCAATAATTGGGGCTGGAGCAGGAACTGGAATATCTGCTAAGTTTGAAGAAGAAGGCGGTGTAGATATGATAATTATATATAACTCTGGACGCTTTCGCATGGCAGGAAGAGGTTCCTTAGCTGGTTTGCTACCTTTTGCAGATGCTAATGCAGTAGTACTTGATATGGCCAATGAGGTCCTACCAGTTGTAAAAAGAGTACCAGTTCTAGCTGGTGTTTGCGGTACAGATCCATTTAGGCGGATGGATAGCTTTTTGCGGCAGCTAGAGTCTATTGGTTTTGCAGGAGTTCAAAACTTTCCTACTGTTGGTCTATTCGATGGTAATTTTCGCCAAAATCTAGAGGAAACTGGCATGGGATATAGGTTGGAGGTTGATGTGATTCACAAAGCACATAAGATGGGTTTGTTGACCACCCCATATGCATTCAATGAAGCGGAAGCTTCTGTAATGGCAGCTGCAGGTTCTGACATCATTGTTGCACATATGGGGCTCACAACTTCAGGGTCTATCGGTGCAAAAACAGCTCTCTCTTTGGATGACAGTGTTGCACGTGTGCAAGCGATTACTGATGCTGCTGCCCGAGTAAATCCAAATGTGATTATGTTATGCCATGGAGGTCCTATTTCAGGTCCCAAAGAGGCAGAATATGTGCTTCAGAGGACAAGAGGAGTCCATGGCTTCTATGGAGCATCGAGCATGGAGAGGCTACCAGTAGAAGAGGCCATTGTGAAGACTATAAAACAGTACAAAACCATATCAGCGTCATCATAG___ACACAGGAAAAAGGGGTAGGCATGCCAAGGAATTAGAAGTTGGCCTGTTAAATTACTGATCTTGCGACCACAATATGGGAATCAGAATGAGTATGGGAATTAGGAGAATATCACTTTGCTGACATTCCGTAATGTGTCCTCGTGGATTTTTTTCTTATGCATGTGTCTTATGTGGGGAATTTCTCTCTTCTATTGGGTGTAATAAATCATTGTGGGAGTATGCTCTATTGACTGTGGGCATGAAAAAAATCCTCTGTACTTAATCCACTTCCAAGATTCCTATTAAAATGCATTAAGATATCCATGTGTATTTTCTTGTATTTCGACACCTACAACAGAGGAATTTCAATGAATCTAAATGGTAAATATGAAGAAAATTGCACATTGGTTTGTGTGCACGATGTAAAACACTTCTTAGGAGGGATCCTGTATAAGGTTTGATTTTAAACGTGTATAAGATGACATCTCCAAATGAATCATAAGTATCTTT

Fln Alignment:

Contig6283___LSYHPETSKQSALVVVSDRSKGGSIIGKALEHFLMDAYLKGELXXXXXXXXXXXTSFIAPSLRALPLGVPKFIVSTVASGQTAPYIGTSDLVLIPSVVDLSGLNSVSRTVLFNXXXXXXXXXXXXXXXXXXLKNEDKHTSVGMTMFGVTTPCVNTVKESLDAKGYETLVFHATGVGGKAMEELVTGGFLQGILDITTTEVADYIVGGVMECNEQRFDAILKKKIPLVLSVGALDMVNFGPKDTIPSHFNHRSFHVHNDQVTLMRTTVEENTKFAKFISKKLNNSSSPVRILLPEKGVSALDAPGKPFYDPQATGTLIEVLERSIQKTRERQVRRLPYHINDPEFADALVDAFLEIATMKPKIIKSPLPQDETQRGGELLNKKEIESQQYLTDYKIVQHPLNEFPDAKPETLKTTRTILQSLKDQIARGVPXXXXXXXXXXXXKFEEEGGVDMIIIYNSGRFRMAGRGSLAGLLPFADANAVVLDMANEVLPVVKRVPVLAGVCGTDPFRRMDSFLRQLESIGFAGVQNFPTVGLFDGNFRQNLEETGMGYRLEVDVIHKAHKMGLLTTPYAFNEAEASVMAAAGSDIIVAHMGLTTSGSIGAKTALSLDDSVARVQAITDAAARVNPNVIMLCHGGPISGPKEAEYVLQRTRGVHGFYGASSMERLPVEEAIVKTIKQYKTIS
F2E8H9______________LSCYPDSSQQD---LPDDRGEAIALMSKALQSFLKNRYEAGTLVAAVGLGGSGGTALIAPALRSLPLGVPKLIVSTVASGNTAPYVGTSDLVLFPSVVDICGINSVSRVILSNAASAVAGMVCGILMASSESDETDTKLTVGITMFGVTTPCANAVKDRLNKEGYETLVFHATGVGGKAMEELVRSGFIQGVLDITTTEVADHIVGGIMACDETRFDAAIDKKIPLVLSVGALDMVNFGAHDTIPAAFSDRKIHIHNEQISLMRTTVEENKKFAQFIAGKLNKSLSTVTVCLPQKGISAIDAPGMPFYDPEATSALLDELNTRLVKTENRQVKLLPYHINDPEFANALVDAFL---SMDIKASNAITPKNNMVLPKQDTNEKVSSSGQKTSDSSIIWRPPVDYPDARPETLQMTKSILHRLKQQISEGIPVIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIVLEMANEVLPVVKEVPVLAGVCATDPFRRMDYFLKQLEAIGFCGVQNFPTVGLFDGNFRQNLEETGMGYSMEVEMISRAHSMGFLTTPYAFNPEEGAAMAKAGAHIVVAHMGLTTAGSIGAKTAATLNDSVARVQAIADAAVGVNPDIIVLCHGGPISGPREAEFVLKNTNRVHGFYGASSMERLPVEQAITNTMREYKRIS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1883		75	25		0.996473
2211	50			10	1.0
2212	44			55	1.0
2343		12		87	0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain