SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6281

Length: 2083 nt

UniGene Fasta

>sp_v3.0_unigene6281
AGCAATGCAAGCTCTGCCCTTCCGATTTGCAGATGCTCTGCTGCGATTACATTCAGAAAGGTCTCTTATACCACATGCCCTTCGCCAACCAGCACTTCGTTTCGGTGGTGGAGCTTCTGAAGAAAAGCCTCTCAGAAGCGCTCGTACACTTCTACCCGTTGGCGGGAAGGTTGCGCACCTCTTCCGATGGCGTTGTGTATATCGACTGTAACGATGGCGGAGTGGATTTAATCGAGGCATCGGCACCAGATGTCGACATTCAAGAAATCACAGAGGCAGAGGTCGGCCCTGTCGTTCGCCAATTGTTTGCGCTAGATGGCGCGAGCAATCTTAACGGTCATTTTCTCCCTTTGCTGGTGGTCCAGGTAACGAAGCTGAGAGACGGAATCTTCATAGGCTTCTCAATCAACCACGCGGTCGTGGACGGTACTTCACTTTGGCATTTCATAAATTCATGGGCGGATCTATGTAGAGGAACGGCCACAATCTCTCACCCGCCTCTTCACAGCCGGTGTTTCGACATAAAAGGGTCCCCCGTGGTTCTCAGTCTGCCCAAAACCCAAACAACCGAGAAGTTCTGCCCGCCTGCTCTGAGCGAAAAAATATTTCATTTCAGCAAAGAGACGATCTGTAAGCTAAAGAACAGAGCCAACCGGAAGAATCCAGAAGGCCCAATTATAATCTCGTCCTTCCAGGCACTTTCCGCCCACATATGGCAAGCCATCACACGGGCTCGCGGTCTGCCTCCCGACGAGCCGACAACCTTCAAGCTCGCAATAAACTGCCGACACAGAATGAATCCACCGCTGCCTTACTCTTACTTCGGCAACGCCATCCAAATTGTTAGCACCACGGTCACGGCTGGGGAGCTGCTGGCCTGCGATATCGGTGCTGCAGCGGGCTTGCTGCATCGCATCATATCGCCACACCGCGATGGCAACATCAGGGCAGAGCTGCAAAAATATAAGCAGCGCCCTACTGTGGTGAAGCTGGATCCAACTATTCGGGATAACAGTGTGATGATGGGAAGTTCTCCAAGATTTCCAATGTACGACAATGACTTCGGATGGGGAAGGCCGGTGGGTGTAAGGAGCGGTTGGGCAAACAAGTTTGACGGCAAAATGTCTGCATATCCCGAAAGGGAAGGAGGAGGCGGCGTGAATATAGAGATCTGTCTTGTGCCTGCTTTCATGGCTGCCCTGGAAACCAACCCACAGTTACTTTTCCCCTGAACAATCCCTCAGCTCTTCAATACGTGTCTGATTGCATGTACTGTACGGATGGTCTGTGATCTCATTTCTTCTGACAAGATTGCATGGCCAGCATCAATTTGAGCAGAAAATCCTTGATATTTGGCTAAAATAGTATCAAGTGAACATGCAGTTGACATTAAATATTTTATTTAGATCAGGAAGTTCTCAGATGCAGCGGCTTATCCACTCTTCCGAACGAAATGGGCAGGGCGTATTCAGTGTTACCAGAGCAACAGGGCAGTCTGCACATTTATTCCGTTTCTTTCAAACTTATTTAATATATTCTCAAATCTTATGCAGGGGAGAAGATTCTCCTTTTCCCCATAGAAATTTGCTCGGAACCCTGCAGGCGCGGTTATGCCTGAATTTTGAAAATTTCTGGAACCTTGAAGCCCCAATCAAGGGCAGTCTGCATAAGATTCTCCTTTTGCTTACAGAAATTTGCCCGGAACCCTGAAGGCGCGGCCAAGCCTGAATTTCGAAAATTTCTGGAACCATGAAGCCCCAGTTACAGGGCAGCCTGCATAAGATTCTCTTTTTGCGTACAGAAATTTGCTTGGAACCCTGAAGGCACGGCTATACCTGTATTTTGAAAATTTCTGGAACCATGAAGCCCCCTTTACGGGCAGGTTAGAAGCATGACACTTTATAGTTGGAATCATGGTTCCGGGAAGATATTTTCCCTTTTGAAAATGATGTTTTTGTCTCCCTCTTAATCTGTCTCCGTTTACTTCATTACCTCCATATGTTTAAAAAATGTGAAACATATTAAGAGTTAGAATCAAAATATTTTATAATTGCAACTTGCCTCATGGTTCCGGGCAGAGGCT

Ace file of the UniGene sp_v3.0_unigene6281

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam02458, Transferase, Transferase family	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316230.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS40

Fln msg: your sequence is shorter than subject: 410 - 440

Fln protein: QCKLCPSDLQMLCCDYIQKGLLYHMPFANQHFVSVVELLKKSLSEALVHFYPLAGRLRTSSDGVVYIDCNDGGVDLIEASAPDVDIQEITEAEVGPVVRQLFALDGASNLNGHFLPLLVVQVTKLRDGIFIGFSINHAVVDGTSLWHFINSWADLCRGTATISHPPLHSRCFDIKGSPVVLSLPKTQTTEKFCPPALSEKIFHFSKETICKLKNRANRKNPEGPIIISSFQALSAHIWQAITRARGLPPDEPTTFKLAINCRHRMNPPLPYSYFGNAIQIVSTTVTAGELLACDIGAAAGLLHRIISPHRDGNIRAELQKYKQRPTVVKLDPTIRDNSVMMGSSPRFPMYDNDFGWGRPVGVRSGWANKFDGKMSAYPEREGGGGVNIEICLVPAFMAALETNPQLLFP*

Protein Length: 411

Fln nts: AGCAATGCAAGCTCTGCCCTTCCGATTTGCAGATGCTCTGCTGCGATTACATTCAGAAAGGTCTCTTATACCACATGCCCTTCGCCAACCAGCACTTCGTTTCGGTGGTGGAGCTTCTGAAGAAAAGCCTCTCAGAAGCGCTCGTACACTTCTACCCGTTGGCGGGAAGGTTGCGCACCTCTTCCGATGGCGTTGTGTATATCGACTGTAACGATGGCGGAGTGGATTTAATCGAGGCATCGGCACCAGATGTCGACATTCAAGAAATCACAGAGGCAGAGGTCGGCCCTGTCGTTCGCCAATTGTTTGCGCTAGATGGCGCGAGCAATCTTAACGGTCATTTTCTCCCTTTGCTGGTGGTCCAGGTAACGAAGCTGAGAGACGGAATCTTCATAGGCTTCTCAATCAACCACGCGGTCGTGGACGGTACTTCACTTTGGCATTTCATAAATTCATGGGCGGATCTATGTAGAGGAACGGCCACAATCTCTCACCCGCCTCTTCACAGCCGGTGTTTCGACATAAAAGGGTCCCCCGTGGTTCTCAGTCTGCCCAAAACCCAAACAACCGAGAAGTTCTGCCCGCCTGCTCTGAGCGAAAAAATATTTCATTTCAGCAAAGAGACGATCTGTAAGCTAAAGAACAGAGCCAACCGGAAGAATCCAGAAGGCCCAATTATAATCTCGTCCTTCCAGGCACTTTCCGCCCACATATGGCAAGCCATCACACGGGCTCGCGGTCTGCCTCCCGACGAGCCGACAACCTTCAAGCTCGCAATAAACTGCCGACACAGAATGAATCCACCGCTGCCTTACTCTTACTTCGGCAACGCCATCCAAATTGTTAGCACCACGGTCACGGCTGGGGAGCTGCTGGCCTGCGATATCGGTGCTGCAGCGGGCTTGCTGCATCGCATCATATCGCCACACCGCGATGGCAACATCAGGGCAGAGCTGCAAAAATATAAGCAGCGCCCTACTGTGGTGAAGCTGGATCCAACTATTCGGGATAACAGTGTGATGATGGGAAGTTCTCCAAGATTTCCAATGTACGACAATGACTTCGGATGGGGAAGGCCGGTGGGTGTAAGGAGCGGTTGGGCAAACAAGTTTGACGGCAAAATGTCTGCATATCCCGAAAGGGAAGGAGGAGGCGGCGTGAATATAGAGATCTGTCTTGTGCCTGCTTTCATGGCTGCCCTGGAAACCAACCCACAGTTACTTTTCCCCTGA___ACAATCCCTCAGCTCTTCAATACGTGTCTGATTGCATGTACTGTACGGATGGTCTGTGATCTCATTTCTTCTGACAAGATTGCATGGCCAGCATCAATTTGAGCAGAAAATCCTTGATATTTGGCTAAAATAGTATCAAGTGAACATGCAGTTGACATTAAATATTTTATTTAGATCAGGAAGTTCTCAGATGCAGCGGCTTATCCACTCTTCCGAACGAAATGGGCAGGGCGTATTCAGTGTTACCAGAGCAACAGGGCAGTCTGCACATTTATTCCGTTTCTTTCAAACTTATTTAATATATTCTCAAATCTTATGCAGGGGAGAAGATTCTCCTTTTCCCCATAGAAATTTGCTCGGAACCCTGCAGGCGCGGTTATGCCTGAATTTTGAAAATTTCTGGAACCTTGAAGCCCCAATCAAGGGCAGTCTGCATAAGATTCTCCTTTTGCTTACAGAAATTTGCCCGGAACCCTGAAGGCGCGGCCAAGCCTGAATTTCGAAAATTTCTGGAACCATGAAGCCCCAGTTACAGGGCAGCCTGCATAAGATTCTCTTTTTGCGTACAGAAATTTGCTTGGAACCCTGAAGGCACGGCTATACCTGTATTTTGAAAATTTCTGGAACCATGAAGCCCCCTTTACGGGCAGGTTAGAAGCATGACACTTTATAGTTGGAATCATGGTTCCGGGAAGATATTTTCCCTTTTGAAAATGATGTTTTTGTCTCCCTCTTAATCTGTCTCCGTTTACTTCATTACCTCCATATGTTTAAAAAATGTGAAACATATTAAGAGTTAGAATCAAAATATTTTATAATTGCAACTTGCCTCATGGTTCCGGGCAGAGGCT

Fln Alignment:

Contig6281___QCKLCPSDLQMLCCDYIQKGLLYHMPFANQHFVSVVELLKKSLSEALVHFYPLAGRLRTSSDGVVYIDCNDGGVDLIEASAPDVDIQEITEAEVGPVVRQLFALDGASNLNGHFLPLLVVQVTKLRDGIFIGFSINHAVVDGTSLWHFINSWADLCRGTATISHPPLHSRCFDIKGSPVVLSLPKTQTTEKFCPPALSEKIFHFSKETICKLKNRANRKNPEGPIIISSFQALSAHIWQAITRARGLPPDEPTTFKLAINCRHRMNPPLPYSYFGNAIQIVSTTVTAGELLACDIGAAAGLLHRIISPHRDGNIRAELQKYKQRPTVVKLDPTIRDNSVMMGSSPRFPMYDNDFGWGRPVGVRSGWANKFDGKMSAYPEREGGGGVNIEICLVPAFMAALETNPQLLFP
B8LS40______________QCKLCPSDLQMLCCDYIQKGLLYHMPFADQHFVSLVELLKKSLSEALVWFYPLAGRLLTSSDGVVYIDCNDSGVDLIEASAPDVGIQEIMEAEVGPVVRQLFALDGAINLNGHFLPLLVVQVTKLRDGISIGFTVNHAVVDGTSLWHFINSWADLCRGAATISHPPLHSRCFDIKGSRIALNLPKTQTVEKFSPPALSEKIFHFSKETIWRLKDRANRKNPKAPIIISSFQALSAHIWQAITRARGLPPNEPTTFKLAVNCRPRLDPPLPYSYFGNAIQIVSTTVTAGELLACDISSAAGLLQRIIWPHRDGNIRAELQKYKQRPTVVKLDRTIRDNSVMMGSSPRFPMYDNDFGWGRPVGVRSGWANKFDGKMSAYPEREGGGGVDVEICLMPAFMAAMETDPQFLFP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1417		11		88	0.923564
1446		88		11	0.923564
1885		16		83	0.994512
1926	83			16	0.994512
1933		20		80	0.995493
2015	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain