SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6242

Length: 2698 nt

UniGene Fasta

>sp_v3.0_unigene6242
CGTCGTGACCTTGGCTGTCACTCAGTCCTGTTTTCTTCTTGGACTCAAGAGCTGATATTTATCCATGGTTTTGTGGTCTTTTTCTTCACGGCTCTGGTTTTGGCCATTACACACCTGATAAGAGTTTTGATGGCGGAAATTGCTTTAGATCCTCGCCTGCTGGTAATCTAGAGGGATTTTTTTGGTCAAGGGAGGATAATTCCTTTACCCTCCCTCTGGAGGAGGAGGCTGGAGACGAGTGTCTGGCCTGGCCTCTCTGGATAGCAGGGTACCCACTTGGGACGTACCTATTTCAGGTTTCTGGAGCTAGCAGAAGAAAAACTCATCTGGGTCTTCGTTGTCAGGTAGTATACATACCGAGAAAGAGGTCGAAAGCCTCATATAGGCAAGGGTCCCTGTTCTGTTGCAGTAAGTTTACAGAGGGCTTGCTTTTCATGGGTTCTTGTATCTGAGACAGTTTAAGGAGGGAATCGATTTGGGTCTCTGTTTTGAGCGCTGCATATAGTATTGAGAAGACGACCAAGGGCTTTAACATCATAAAACCATTGGGGTCAGAGTTAGCATAAGGTCCAGGGCGGGGTTTTGTATCAGAGAATGCGTTTGGGATCCTTGTTGCTGGGGCTGTAGAGGCTTGAGAAGGAGCTTTGAGGATTTCTGTTGCAGCCAAGCTATTTGAGTTCTTGTAGGGCTTATTGGGCTAAGCTTAGAAGGAAAACTGAGAAGAGGCAGTGGTTTTGAAGCGGGTCATTTTTTGAATTTGTGCGAGACCATGGATGTGAGAGCGCTTTATAAGGCCTGAGGGATGGGACTGGGGCCGGGTGTTGTACAGGTAGAGGCTTGGGAGCAGGTGGGCAATTCCAGTCGGGTTGGACGCCGGAGAAAGAAGGATGAAGCCGAGGCGCGGGGATGCTGGCATGGTCTGAACTTTGGGCTCATGAGCAGCTGCATCTCCTCCAGATCCAAAGTAGATAACTCCATAAGCAGCCCTGCTATCCATTCTGCTGAAACTAAATCTCCAAATGATAGTGGCAAAGAGCCGCCTGCTGCTCAGACAGTGTCTTCCACAAGTACTAGTAATACAGGAAGCAATCCATCCACTCCCAAAGTAGGAGATGATTTGAAAGTTGCATCCCAGTTGCGCAAATTCACTTTTAATGATTTGAAGTATGCAACCAGAAACTTCAGGCCAGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTTTTCAAAGGTTGGATAGAAGAGAATGGCACTGCTCCTGTCAAGCCTGGTACTGGTCTCACTGTAGCTGTAAAAACACTCAACCATGATGGGCTGCAAGGTCACAAGGAATGGCTGGCAGAAGTCAATTTTCTTGGGGACCTTATCCATCCTAATCTGGTTAAACTTATTGGGTATTGCATAGAAGATGATCAGAGGCTACTTGTGTATGAGTTTATGCCTCGAGGTAGCCTGGAGAATCATCTCTTTAGAAAAGGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATACAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCTGAGTATGTAATGACTGGACATTTGACATCGAGGAGTGATGTCTATAGCTTTGGTGTTGTTCTACTTGAAATGTTAACTGGTCGAAGATCCATGGACAAAAACAGGCCTAGTGGGGAGCACAATCTGGTGGAGTGGGCTCGCCCTTACCTTGGTGAGAAAAGAAGGTTATATCGTCTTATAGACCCCCGTTTGGAGGGTAACTTTTCCATTAAAGGAGCACAAAAGGCTGCCCAGTTGGCTTGCCATTGCCTCAGTCGAGATCCAAAAGCTAGGCCTTTAATGAGTGAGGTTGTTGAGGCACTCAGACCTTTGTTGAATTTGAAAGACATGGCAAGCTCATCCTTTCACTATCAAGCATTGCAAGCAGAACGTTCAAGTCGTCAACAGCAATTGGTAAACGGAAATGGACAGTTGAAGAATGGTGCATATCTAAATGGGCAATTATCTTCAAAGAATGGACGCCCACGAGTTCTCGCTAATATTTCTCACGCTTCACCATATCGTCAATCTCCAAGGCAAAATGGTAAAGTATCATAGGTGATTGGACCTCTTTTCCATCATTTCTTTCTTGAATTTGTACACTTGTCACTAAAGCTGCTCAGTTTCAGTCCTTCGCAACTTACCAAGGGGAAGCAGTGTGAACTTGTGAAGCGTGGGTGTGTTATCTGTACAAGGCTTGAACATTTTAAGAGGCCATTTCTGGAATCTTGTAGAGTAAGTTCAACTATTGTGGAAAGTTTATGCTAAATTCTCTGATGCTGTATAAAATTATAAAGCCTATCTGACCAATCATAGCAGAGGATAATACACATGTTGCTGCGACTTTGTCTTTAAATTAAAGTAGCAATGAGGGTACTATGAAAACTCTGCTTTGTCTTTGGAGTTGGAGCATTTTACTGTGGTTTTGCAAGTTTTCTTTTGGACTACTAACTAAATGGGCACGTTGAATCTATAATTGAATGTGTATTTTTTACC

Ace file of the UniGene sp_v3.0_unigene6242

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine protein kinase-like [Solanum tuberosum]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15080.1	Protein kinase superfamily protein chr5:4886414-4888555 FORWARD LENGTH=493	69%
RefSeq	Arabidopsis thaliana	NP_197012.1	protein kinase family protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002311881.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT7

Fln msg:

Fln protein: MGLGPGVVQVEAWEQVGNSSRVGRRRKKDEAEARGCWHGLNFGLMSSCISSRSKVDNSISSPAIHSAETKSPNDSGKEPPAAQTVSSTSTSNTGSNPSTPKVGDDLKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPSGEHNLVEWARPYLGEKRRLYRLIDPRLEGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLVNGNGQLKNGAYLNGQLSSKNGRPRVLANISHASPYRQSPRQNGKVS*

Protein Length: 487

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCCTGTTTTCTTCTTGGACTCAAGAGCTGATATTTATCCATGGTTTTGTGGTCTTTTTCTTCACGGCTCTGGTTTTGGCCATTACACACCTGATAAGAGTTTTGATGGCGGAAATTGCTTTAGATCCTCGCCTGCTGGTAATCTAGAGGGATTTTTTTGGTCAAGGGAGGATAATTCCTTTACCCTCCCTCTGGAGGAGGAGGCTGGAGACGAGTGTCTGGCCTGGCCTCTCTGGATAGCAGGGTACCCACTTGGGACGTACCTATTTCAGGTTTCTGGAGCTAGCAGAAGAAAAACTCATCTGGGTCTTCGTTGTCAGGTAGTATACATACCGAGAAAGAGGTCGAAAGCCTCATATAGGCAAGGGTCCCTGTTCTGTTGCAGTAAGTTTACAGAGGGCTTGCTTTTCATGGGTTCTTGTATCTGAGACAGTTTAAGGAGGGAATCGATTTGGGTCTCTGTTTTGAGCGCTGCATATAGTATTGAGAAGACGACCAAGGGCTTTAACATCATAAAACCATTGGGGTCAGAGTTAGCATAAGGTCCAGGGCGGGGTTTTGTATCAGAGAATGCGTTTGGGATCCTTGTTGCTGGGGCTGTAGAGGCTTGAGAAGGAGCTTTGAGGATTTCTGTTGCAGCCAAGCTATTTGAGTTCTTGTAGGGCTTATTGGGCTAAGCTTAGAAGGAAAACTGAGAAGAGGCAGTGGTTTTGAAGCGGGTCATTTTTTGAATTTGTGCGAGACCATGGATGTGAGAGCGCTTTATAAGGCCTGAGGG_-_ATGGGACTGGGGCCGGGTGTTGTACAGGTAGAGGCTTGGGAGCAGGTGGGCAATTCCAGTCGGGTTGGACGCCGGAGAAAGAAGGATGAAGCCGAGGCGCGGGGATGCTGGCATGGTCTGAACTTTGGGCTCATGAGCAGCTGCATCTCCTCCAGATCCAAAGTAGATAACTCCATAAGCAGCCCTGCTATCCATTCTGCTGAAACTAAATCTCCAAATGATAGTGGCAAAGAGCCGCCTGCTGCTCAGACAGTGTCTTCCACAAGTACTAGTAATACAGGAAGCAATCCATCCACTCCCAAAGTAGGAGATGATTTGAAAGTTGCATCCCAGTTGCGCAAATTCACTTTTAATGATTTGAAGTATGCAACCAGAAACTTCAGGCCAGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTTTTCAAAGGTTGGATAGAAGAGAATGGCACTGCTCCTGTCAAGCCTGGTACTGGTCTCACTGTAGCTGTAAAAACACTCAACCATGATGGGCTGCAAGGTCACAAGGAATGGCTGGCAGAAGTCAATTTTCTTGGGGACCTTATCCATCCTAATCTGGTTAAACTTATTGGGTATTGCATAGAAGATGATCAGAGGCTACTTGTGTATGAGTTTATGCCTCGAGGTAGCCTGGAGAATCATCTCTTTAGAAAAGGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATACAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCTGAGTATGTAATGACTGGACATTTGACATCGAGGAGTGATGTCTATAGCTTTGGTGTTGTTCTACTTGAAATGTTAACTGGTCGAAGATCCATGGACAAAAACAGGCCTAGTGGGGAGCACAATCTGGTGGAGTGGGCTCGCCCTTACCTTGGTGAGAAAAGAAGGTTATATCGTCTTATAGACCCCCGTTTGGAGGGTAACTTTTCCATTAAAGGAGCACAAAAGGCTGCCCAGTTGGCTTGCCATTGCCTCAGTCGAGATCCAAAAGCTAGGCCTTTAATGAGTGAGGTTGTTGAGGCACTCAGACCTTTGTTGAATTTGAAAGACATGGCAAGCTCATCCTTTCACTATCAAGCATTGCAAGCAGAACGTTCAAGTCGTCAACAGCAATTGGTAAACGGAAATGGACAGTTGAAGAATGGTGCATATCTAAATGGGCAATTATCTTCAAAGAATGGACGCCCACGAGTTCTCGCTAATATTTCTCACGCTTCACCATATCGTCAATCTCCAAGGCAAAATGGTAAAGTATCATAG___GTGATTGGACCTCTTTTCCATCATTTCTTTCTTGAATTTGTACACTTGTCACTAAAGCTGCTCAGTTTCAGTCCTTCGCAACTTACCAAGGGGAAGCAGTGTGAACTTGTGAAGCGTGGGTGTGTTATCTGTACAAGGCTTGAACATTTTAAGAGGCCATTTCTGGAATCTTGTAGAGTAAGTTCAACTATTGTGGAAAGTTTATGCTAAATTCTCTGATGCTGTATAAAATTATAAAGCCTATCTGACCAATCATAGCAGAGGATAATACACATGTTGCTGCGACTTTGTCTTTAAATTAAAGTAGCAATGAGGGTACTATGAAAACTCTGCTTTGTCTTTGGAGTTGGAGCATTTTACTGTGGTTTTGCAAGTTTTCTTTTGGACTACTAACTAAATGGGCACGTTGAATCTATAATTGAATGTGTATTTTTTACC

Fln Alignment:

Contig6242___MGLGPGVVQVEAWEQVGNSSRVGRRRKKDEAEARGCWHGLNFGLMSSCISSRSKVDNSISSPAIHSAETKSPNDSGKEPPAAQTVXXXXXXXXXXXXXXXKVGDDLKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPSGEHNLVEWARPYLGEKRRLYRLIDPRLEGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLVNGNGQLKNGAYLNGQLSSKNGRPRVLANISHASPYRQSPRQNGKVS
B8LRT7______________MGLGPGVVQVEAWEQVGNSSRVGGRRKKDEAEARGCWHGLNFGLMSSCISSRSKVDNSISSTAIHSAETKSPNDSSKEPPAAQTVSSTSTSNTGSNPSTPKVGDELKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRR-SLPLPWSIRMKIALGAAKGLAFLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKSRPSGEHNLVEWARPYLGEKRRLYRLIDPRLDGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLANGNGQLKNVAYLNGQLSSKNGRPRVITNISHASPYRQSPRQNGKGS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
429		42		42	1.0
520	14	85			0.993533
587	85			14	0.993533
642	12		87		0.992554
643		87		12	0.992554
664		80	20		0.999996
665		80	20		0.999996
806			75	25	1.0
838		14		85	0.993533
1454		87		12	0.992554
1471		14		85	0.993533
1541	14		85		0.993533
1608		16		83	0.994512
1707	90		10		0.90298
2548		20		80	0.999996
2552		44		55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain